Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037453.1

Orthogroup ID

OG0007884

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 996

Gene Structure 995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037453.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atgtaccgtagaacttcccttcgcatttgtcaattgaaccgaatgtcttgtccaccctatattagtcatggtttacggacctttagaggaatcggacctcatattctccgcacctttgagaggctcgaggacctcgccaccgccgttcaggattgtaatatacttgattttcatgagagtgggggctatatggcaaactatccaggaaaaggagccccttcgaatgggtctgtctatgtttgcaacttgccggaggggactgatgagaatatgctggccgaatattttggcaccatcgggttgttgaagaaagacaagcgaacaggtcgaccaaaaatttggttgtacagagacaaagcgacagatgaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1901796 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05202 map03022 map05202

Pfam Domains

Protein Families

RRM_1 zf-RanBP

Protein Analysis

123

Amino Acids

13.99

Weight (kDa)

8.72

Isoelectric Point (pI)

49.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50300 AT1G50300
fragaria_vesca	FvH4_4g36691 FvH4_4g36691
malus_domestica	MD13G1008100.v1.1 MD16G1000100.v1.1
prunus_persica	Prupe.1G345000_v2.0.a1 Prupe.1G345000_v2.0.a1 Prupe.1G345000_v2.0.a1 Prupe.1G345000_v2.0.a1 Prupe.1G345000_v2.0.a1 Prupe.1G345000_v2.0.a1 Prupe.1G345000_v2.0.a1 Prupe.1G345000_v2.0.a1
pyrus_communis	pycom13g00660 pycom16g00530
rosa_chinensis	RchiOBHm_Chr4g0446411
rosa_laevigata	RLG00000005663
rosa_multiflora	Rmu_sc0037453.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386850
rosa_samantha	Rh4AG432700 Rh4CG459200 Rh4DG440600
rosa_wichuraiana	Rw4G036960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	290
AccI	GTMKAC	1 cut(s)	328
AciI	CCGC	2 cut(s)	109, 141
AcoI	YGGCCR	1 cut(s)	276
AcsI	RAATTY	1 cut(s)	336
AfaI	GTAC	2 cut(s)	5, 347
AfiI	CCNNNNNNNGG	3 cut(s)	120, 209, 224
AgsI	TTSAA	2 cut(s)	37, 307
AjnI	CCWGG	1 cut(s)	202
Alw26I	GTCTC	1 cut(s)	345
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	1 cut(s)	276
ApoI	RAATTY	1 cut(s)	336
ArsI	GACNNNNNNTTYG	4 cut(s)	34, 66, 321, 353
AspS9I	GGNCC	3 cut(s)	78, 95, 130
AsuII	TTCGAA	1 cut(s)	221
AvaI	CYCGRG	1 cut(s)	125
AvaII	GGWCC	3 cut(s)	78, 95, 130
BanI	GGYRCC	1 cut(s)	290
BanII	GRGCYC	1 cut(s)	217
BccI	CCATC	1 cut(s)	302
BceAI	ACGGC	1 cut(s)	128
BciT130I	CCWGG	1 cut(s)	204
BcoDI	GTCTC	1 cut(s)	345
Bme1390I	CCNGG	1 cut(s)	204
Bme18I	GGWCC	3 cut(s)	78, 95, 130
BmeT110I	CYCGRG	1 cut(s)	125
BmgT120I	GGNCC	3 cut(s)	78, 95, 130
BmiI	GGNNCC	2 cut(s)	214, 292
BmrFI	CCNGG	1 cut(s)	204
Bpu14I	TTCGAA	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	3 cut(s)	120, 209, 224
BseBI	CCWGG	1 cut(s)	204
BseLI	CCNNNNNNNGG	3 cut(s)	120, 209, 224
BshFI	GGCC	1 cut(s)	278
BshNI	GGYRCC	1 cut(s)	290
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	251
BslFI	GGGAC	1 cut(s)	271
BslI	CCNNNNNNNGG	3 cut(s)	120, 209, 224
BsmAI	GTCTC	1 cut(s)	345
BsmFI	GGGAC	1 cut(s)	271
BsnI	GGCC	1 cut(s)	278
BsoBI	CYCGRG	1 cut(s)	125
Bsp119I	TTCGAA	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp1407I	TGTACA	1 cut(s)	345
BspACI	CCGC	2 cut(s)	109, 141
BspANI	GGCC	1 cut(s)	278
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	2 cut(s)	214, 292
BspT104I	TTCGAA	1 cut(s)	221
BspT107I	GGYRCC	1 cut(s)	290
BsrGI	TGTACA	1 cut(s)	345
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	1 cut(s)	8
BstAUI	TGTACA	1 cut(s)	345
BstBI	TTCGAA	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	276
BstENI	CCTNNNNNAGG	1 cut(s)	118
BstMAI	GTCTC	1 cut(s)	345
BstNI	CCWGG	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	202
BstXI	CCANNNNNNTGG	1 cut(s)	339
BsuRI	GGCC	1 cut(s)	278
Cac8I	GCNNGC	1 cut(s)	276
CciI	TCATGA	1 cut(s)	172
Cfr13I	GGNCC	3 cut(s)	78, 95, 130
Csp6I	GTAC	2 cut(s)	4, 346
CviAII	CATG	2 cut(s)	68, 173
CviJI	RGCY	4 cut(s)	124, 186, 215, 278
CviKI_1	RGCY	4 cut(s)	124, 186, 215, 278
CviQI	GTAC	2 cut(s)	4, 346
EaeI	YGGCCR	1 cut(s)	276
Eco24I	GRGCYC	1 cut(s)	217
Eco47I	GGWCC	3 cut(s)	78, 95, 130
Eco88I	CYCGRG	1 cut(s)	125
EcoNI	CCTNNNNNAGG	1 cut(s)	118
EcoO109I	RGGNCCY	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	217
FaeI	CATG	2 cut(s)	71, 176
FaiI	YATR	9 cut(s)	60, 69, 102, 161, 174, 189, 191, 237, 272
FaqI	GGGAC	1 cut(s)	271
FatI	CATG	2 cut(s)	67, 172
FblI	GTMKAC	1 cut(s)	328
FriOI	GRGCYC	1 cut(s)	217
HaeIII	GGCC	1 cut(s)	278
HapII	CCGG	1 cut(s)	251
Hin1II	CATG	2 cut(s)	71, 176
HincII	GTYRAC	1 cut(s)	329
HindII	GTYRAC	1 cut(s)	329
HinfI	GANTC	1 cut(s)	90
HpaII	CCGG	1 cut(s)	251
Hpy166II	GTNNAC	3 cut(s)	53, 74, 329
Hpy188I	TCNGA	1 cut(s)	95
Hpy188III	TCNNGA	2 cut(s)	149, 173
Hpy8I	GTNNAC	3 cut(s)	53, 74, 329
HpyAV	CCTTC	2 cut(s)	29, 228
HpyCH4III	ACNGT	1 cut(s)	8
HpyCH4V	TGCA	1 cut(s)	243
Hsp92II	CATG	2 cut(s)	71, 176
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	6 cut(s)	134, 189, 216, 260, 264, 309
MboII	GAAGA	1 cut(s)	319
MfeI	CAATTG	1 cut(s)	32
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	2 cut(s)	32, 336
MnlI	CCTC	6 cut(s)	80, 108, 114, 121, 143, 247
MslI	CAYNNNNRTG	1 cut(s)	177
MspI	CCGG	1 cut(s)	251
MspR9I	CCNGG	1 cut(s)	204
MunI	CAATTG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	204
NlaIII	CATG	2 cut(s)	71, 176
NlaIV	GGNNCC	2 cut(s)	214, 292
NspV	TTCGAA	1 cut(s)	221
PaeR7I	CTCGAG	1 cut(s)	125
PagI	TCATGA	1 cut(s)	172
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	90
PfoI	TCCNGGA	1 cut(s)	202
PpuMI	RGGWCCY	1 cut(s)	130
Psp5II	RGGWCCY	1 cut(s)	130
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	2 cut(s)	214, 292
PspPI	GGNCC	3 cut(s)	78, 95, 130
PspPPI	RGGWCCY	1 cut(s)	130
PspXI	VCTCGAGB	1 cut(s)	125
RsaI	GTAC	2 cut(s)	5, 347
RsaNI	GTAC	2 cut(s)	4, 346
RseI	CAYNNNNRTG	1 cut(s)	177
SalI	GTCGAC	1 cut(s)	327
Sau96I	GGNCC	3 cut(s)	78, 95, 130
ScrFI	CCNGG	1 cut(s)	204
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	5 cut(s)	83, 100, 116, 135, 328
Sfr274I	CTCGAG	1 cut(s)	125
SfuI	TTCGAA	1 cut(s)	221
SinI	GGWCC	3 cut(s)	78, 95, 130
SlaI	CTCGAG	1 cut(s)	125
SmiMI	CAYNNNNRTG	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	2 cut(s)	32, 336
SsiI	CCGC	2 cut(s)	109, 141
SspI	AATATT	1 cut(s)	284
StyD4I	CCNGG	1 cut(s)	202
TaaI	ACNGT	1 cut(s)	8
TaqI	TCGA	3 cut(s)	126, 221, 328
TasI	AATT	2 cut(s)	32, 336
TatI	WGTACW	1 cut(s)	345
TfiI	GAWTC	1 cut(s)	90
TspDTI	ATGAA	1 cut(s)	161
TspGWI	ACGGA	1 cut(s)	91
VpaK11BI	GGWCC	3 cut(s)	78, 95, 130
XagI	CCTNNNNNAGG	1 cut(s)	118
XapI	RAATTY	1 cut(s)	336
XhoI	CTCGAG	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.