FvH4_4g36691

Transcription initiation factor TFIID subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
33502938 .. 33506854
3917 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g36691.t1

Sequence Viewer

Length: 1188 bp
ATGGCGAACTATTCGGGAAAAGGAGGCCCTGCAAATGGTTCTGTCTATGTCTGCAACTTGCCGGAGGGCACTGATGAAAATATGCTTGCCGAATATTTCGGTACCATCGGCTTGTTGAAGAAAGACAAGCGAACAGGTGGACCGAAAATTTGGTTATACAGGGACAAAGTGACAGATGAGCCAAAGGGAGATGCTACTGTAACATATGAAGATCCACATGCTGCATTCGCGGCTGTTGAGTGGTTTAACGACAAGGAGTTTCATGGTAATGTCATTGGGGTTCATATAGCAGAGTCGAAAAGAGACGACCAGACGTATAACCCTGGGCTTGATGTAACCTCTACTGGTGTTGATCCAAGTTATGGCGGAGTAGAGGAAAATGCTGAGGACATGAATGGGGCTGGCGGTAAAGGCCCGGGTGATGTTCCTGGGAAAGCATGGCAACAGGATGGAGACTGGACGTGTCCGAATACAAGTTGTGGCAATGTCAATTTTGCATTCCGTGGTGTGTGCAACCGCTGTGGAAGTGCTCGACCAACTGGTGCTTCTGGGGGTGGGTCAGGGGGTGGTGGTCGTGGGAGGGGCCGTGGGGTTGACTCTGGTGGCCGTGGTGGTCCTGTTGGTGCTCCTACAGGGGGACTCTTTGGTCCGAATGATTGGCCTTGTCCAATGTGTGGCAACATTAACTGGGCAAAGCGTACGAAATGCAATATATGCAACACAAATAGACCTGGTCACAATGAGGGTGGTGTAAGAGGAGGGCGTGGTGGGGGTTACAAAGAACTTGATGAAGAAGAGCTGGAGGAAATCAAGCGACGCCGGCGGGAGGCTGAAGAAGATGATGGAGAGATGTATGATGAGTTTGGCAACCTGAAGAAAAAATTTCGAGCTAAAACATCACAGCAAGCTGAGACTGGACGGGCTCTTCCAGGTGCTGGGCGTGCTGGATGGGAGGTTGAGGAAATAGGTGTTGTTGATAGAGATGGCAGAGAAAGAAATAGAGATAGAGGAAGGGAACGTGATGATAGAGCGGGCAGCAAGAACAGGGAAAGGGATGATAGGGATAGGCGTCGGAGTCGAAGCAGAGAAAGGGATAGGGCGAGAGATCGACCTCGAGATTATGATCGGGAGAAAGAATATGGGCGGGAGAGGGACCGGGATAGGGATCGGAACAGGCACCGTTATTGA

Protein Analysis

396

Amino Acids

43.59

Weight (kDa)

7.53

Isoelectric Point (pI)

36.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 15 - 92 1.6e-07 RNA recognition motif
Zn_ribbon_RanBP PF00641 150 - 179 1.9e-06 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 645
Acc65I GGTACC 1 cut(s) 101
AccB1I GGYRCC 2 cut(s) 101, 1176
AccB7I CCANNNNNTGG 3 cut(s) 362, 674, 935
AccBSI CCGCTC 1 cut(s) 1031
AccII CGCG 1 cut(s) 230
AciI CCGC 7 cut(s) 230, 366, 405, 517, 823, 1031, 1144
AclWI GGATC 3 cut(s) 206, 347, 1173
AcoI YGGCCR 1 cut(s) 604
AcsI RAATTY 2 cut(s) 147, 881
AcuI CTGAAG 2 cut(s) 852, 893
AcyI GRCGYC 2 cut(s) 817, 1069
AfaI GTAC 2 cut(s) 103, 700
AfiI CCNNNNNNNGG 7 cut(s) 35, 362, 635, 674, 826, 935, 1162
AflIII ACRYGT 1 cut(s) 461
AgsI TTSAA 1 cut(s) 118
AjiI CACGTC 1 cut(s) 462
AjnI CCWGG 4 cut(s) 322, 427, 730, 928
AjuI GAANNNNNNNTTGG 2 cut(s) 529, 561
AluBI AGCT 3 cut(s) 799, 890, 908
AluI AGCT 3 cut(s) 799, 890, 908
Alw21I GWGCWC 2 cut(s) 532, 628
Alw26I GTCTC 3 cut(s) 297, 447, 905
AlwI GGATC 3 cut(s) 206, 347, 1173
AlwNI CAGNNNCTG 1 cut(s) 935
Ama87I CYCGRG 2 cut(s) 415, 1113
AoxI GGCC 5 cut(s) 25, 412, 583, 604, 659
ApeKI GCWGC 2 cut(s) 221, 1035
ApoI RAATTY 2 cut(s) 147, 881
ArsI GACNNNNNNTTYG 2 cut(s) 132, 164
Asp718I GGTACC 1 cut(s) 101
AspS9I GGNCC 7 cut(s) 26, 140, 413, 583, 614, 647, 1153
AsuC2I CCSGG 3 cut(s) 416, 417, 1157
AsuHPI GGTGA 1 cut(s) 431
AvaI CYCGRG 2 cut(s) 415, 1113
AvaII GGWCC 4 cut(s) 140, 614, 647, 1153
BaeGI GKGCMC 1 cut(s) 71
BanI GGYRCC 2 cut(s) 101, 1176
BanII GRGCYC 1 cut(s) 925
Bbv12I GWGCWC 2 cut(s) 532, 628
BbvCI CCTCAGC 1 cut(s) 384
BbvI GCAGC 2 cut(s) 208, 1047
BccI CCATC 5 cut(s) 113, 443, 836, 942, 977
BceAI ACGGC 2 cut(s) 570, 591
BciT130I CCWGG 4 cut(s) 324, 429, 732, 930
BcnI CCSGG 3 cut(s) 416, 417, 1157
BcoDI GTCTC 3 cut(s) 297, 447, 905
BfmI CTRYAG 1 cut(s) 630
BisI GCNGC 3 cut(s) 222, 231, 1036
BlsI GCNGC 3 cut(s) 223, 232, 1037
Bme1390I CCNGG 7 cut(s) 324, 416, 417, 429, 732, 930, 1157
Bme18I GGWCC 4 cut(s) 140, 614, 647, 1153
BmeT110I CYCGRG 2 cut(s) 415, 1113
BmgBI CACGTC 1 cut(s) 462
BmgT120I GGNCC 7 cut(s) 26, 140, 413, 583, 614, 647, 1153
BmiI GGNNCC 4 cut(s) 103, 584, 1154, 1178
BmrFI CCNGG 7 cut(s) 324, 416, 417, 429, 732, 930, 1157
BmrI ACTGGG 1 cut(s) 697
BmsI GCATC 1 cut(s) 181
BmuI ACTGGG 1 cut(s) 697
BpmI CTGGAG 1 cut(s) 821
Bpu10I CCTNAGC 1 cut(s) 384
BpuMI CCSGG 3 cut(s) 416, 417, 1157
BsaBI GATNNNNATC 2 cut(s) 1122, 1164
BsaHI GRCGYC 2 cut(s) 817, 1069
BsaJI CCNNGG 7 cut(s) 322, 323, 415, 428, 502, 586, 607
BsaXI ACNNNNNCTCC 2 cut(s) 571, 601
Bsc4I CCNNNNNNNGG 7 cut(s) 35, 362, 635, 674, 826, 935, 1162
Bse118I RCCGGY 1 cut(s) 819
Bse1I ACTGG 5 cut(s) 349, 461, 544, 692, 919
Bse3DI GCAATG 1 cut(s) 490
Bse8I GATNNNNATC 2 cut(s) 1122, 1164
BseBI CCWGG 4 cut(s) 324, 429, 732, 930
BseDI CCNNGG 7 cut(s) 322, 323, 415, 428, 502, 586, 607
BseGI GGATG 3 cut(s) 454, 953, 1060
BseJI GATNNNNATC 2 cut(s) 1122, 1164
BseLI CCNNNNNNNGG 7 cut(s) 35, 362, 635, 674, 826, 935, 1162
BseMI GCAATG 1 cut(s) 490
BseMII CTCAG 2 cut(s) 375, 900
BseNI ACTGG 5 cut(s) 349, 461, 544, 692, 919
BseRI GAGGAG 1 cut(s) 771
BseSI GKGCMC 1 cut(s) 71
BseXI GCAGC 2 cut(s) 208, 1047
BseYI CCCAGC 1 cut(s) 935
Bsh1236I CGCG 1 cut(s) 230
BshFI GGCC 5 cut(s) 27, 414, 585, 606, 661
BshNI GGYRCC 2 cut(s) 101, 1176
BsiHKAI GWGCWC 2 cut(s) 532, 628
BsiHKCI CYCGRG 2 cut(s) 415, 1113
BsiSI CCGG 4 cut(s) 62, 416, 820, 1156
BsiWI CGTACG 1 cut(s) 698
BslFI GGGAC 3 cut(s) 176, 651, 1166
BslI CCNNNNNNNGG 7 cut(s) 35, 362, 635, 674, 826, 935, 1162
BsmAI GTCTC 3 cut(s) 297, 447, 905
BsmBI CGTCTC 1 cut(s) 297
BsmFI GGGAC 3 cut(s) 176, 651, 1166
BsmI GAATGC 2 cut(s) 224, 497
BsnI GGCC 5 cut(s) 27, 414, 585, 606, 661
BsoBI CYCGRG 2 cut(s) 415, 1113
Bsp1286I GDGCHC 4 cut(s) 71, 532, 628, 925
Bsp143I GATC 5 cut(s) 211, 352, 1105, 1123, 1165
BspACI CCGC 7 cut(s) 230, 366, 405, 517, 823, 1031, 1144
BspANI GGCC 5 cut(s) 27, 414, 585, 606, 661
BspCNI CTCAG 2 cut(s) 376, 901
BspFNI CGCG 1 cut(s) 230
BspLI GGNNCC 4 cut(s) 103, 584, 1154, 1178
BspPI GGATC 3 cut(s) 206, 347, 1173
BspQI GCTCTTC 2 cut(s) 789, 930
BspT107I GGYRCC 2 cut(s) 101, 1176
BsrBI CCGCTC 1 cut(s) 1031
BsrDI GCAATG 1 cut(s) 490
BsrFI RCCGGY 1 cut(s) 819
BsrI ACTGG 5 cut(s) 349, 461, 544, 692, 919
BssAI RCCGGY 1 cut(s) 819
BssECI CCNNGG 7 cut(s) 322, 323, 415, 428, 502, 586, 607
BssMI GATC 5 cut(s) 211, 352, 1105, 1123, 1165
BssNI GRCGYC 2 cut(s) 817, 1069
Bst2UI CCWGG 4 cut(s) 324, 429, 732, 930
Bst4CI ACNGT 2 cut(s) 199, 1181
Bst6I CTCTTC 2 cut(s) 789, 930
BstACI GRCGYC 2 cut(s) 817, 1069
BstAPI GCANNNNNTGC 1 cut(s) 714
BstC8I GCNNGC 6 cut(s) 87, 403, 821, 906, 942, 1033
BstDEI CTNAG 2 cut(s) 384, 909
BstDSI CCRYGG 3 cut(s) 502, 586, 607
BstF5I GGATG 3 cut(s) 454, 953, 1060
BstFNI CGCG 1 cut(s) 230
BstKTI GATC 5 cut(s) 214, 355, 1108, 1126, 1168
BstMAI GTCTC 3 cut(s) 297, 447, 905
BstMBI GATC 5 cut(s) 211, 352, 1105, 1123, 1165
BstMWI GCNNNNNNNGC 6 cut(s) 227, 230, 411, 714, 820, 941
BstNI CCWGG 4 cut(s) 324, 429, 732, 930
BstNSI RCATGY 1 cut(s) 221
BstSCI CCNGG 7 cut(s) 322, 414, 415, 427, 730, 928, 1155
BstSFI CTRYAG 1 cut(s) 630
BstSLI GKGCMC 1 cut(s) 71
BstUI CGCG 1 cut(s) 230
BstV1I GCAGC 2 cut(s) 208, 1047
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
BsuRI GGCC 5 cut(s) 27, 414, 585, 606, 661
BtgI CCRYGG 3 cut(s) 502, 586, 607
BtrI CACGTC 1 cut(s) 462
BtsCI GGATG 3 cut(s) 454, 953, 1060
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 6 cut(s) 87, 403, 821, 906, 942, 1033
CaiI CAGNNNCTG 1 cut(s) 935
Cfr10I RCCGGY 1 cut(s) 819
Cfr13I GGNCC 7 cut(s) 26, 140, 413, 583, 614, 647, 1153
Cfr9I CCCGGG 1 cut(s) 415
CseI GACGC 2 cut(s) 825, 1058
CsiI ACCWGGT 1 cut(s) 730
Csp6I GTAC 2 cut(s) 102, 699
CspCI CAANNNNNGTGG 4 cut(s) 502, 537, 727, 762
CviAII CATG 4 cut(s) 218, 263, 391, 438
CviQI GTAC 2 cut(s) 102, 699
DdeI CTNAG 2 cut(s) 384, 909
DpnI GATC 5 cut(s) 213, 354, 1107, 1125, 1167
DpnII GATC 5 cut(s) 211, 352, 1105, 1123, 1165
DrdI GACNNNNNNGTC 1 cut(s) 645
DseDI GACNNNNNNGTC 1 cut(s) 645
EaeI YGGCCR 1 cut(s) 604
Eam1104I CTCTTC 2 cut(s) 789, 930
EarI CTCTTC 2 cut(s) 789, 930
EciI GGCGGA 1 cut(s) 381
Eco24I GRGCYC 1 cut(s) 925
Eco47I GGWCC 4 cut(s) 140, 614, 647, 1153
Eco57I CTGAAG 2 cut(s) 852, 893
Eco88I CYCGRG 2 cut(s) 415, 1113
EcoO109I RGGNCCY 1 cut(s) 26
EcoRII CCWGG 4 cut(s) 322, 427, 730, 928
EcoT38I GRGCYC 1 cut(s) 925
Esp3I CGTCTC 1 cut(s) 297
FaeI CATG 4 cut(s) 221, 266, 394, 441
FaqI GGGAC 3 cut(s) 176, 651, 1166
FatI CATG 4 cut(s) 217, 262, 390, 437
FauI CCCGC 3 cut(s) 816, 1024, 1137
FauNDI CATATG 1 cut(s) 205
Fnu4HI GCNGC 3 cut(s) 222, 231, 1036
FokI GGATG 3 cut(s) 461, 960, 1067
FriOI GRGCYC 1 cut(s) 925
Fsp4HI GCNGC 3 cut(s) 222, 231, 1036
GluI GCNGC 3 cut(s) 222, 231, 1036
GsaI CCCAGC 1 cut(s) 939
GsuI CTGGAG 1 cut(s) 821
HaeIII GGCC 5 cut(s) 27, 414, 585, 606, 661
HapII CCGG 4 cut(s) 62, 416, 820, 1156
HgaI GACGC 2 cut(s) 825, 1058
Hin1I GRCGYC 2 cut(s) 817, 1069
Hin1II CATG 4 cut(s) 221, 266, 394, 441
HincII GTYRAC 1 cut(s) 595
HindII GTYRAC 1 cut(s) 595
HinfI GANTC 4 cut(s) 293, 596, 639, 1075
HpaII CCGG 4 cut(s) 62, 416, 820, 1156
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 2 cut(s) 140, 595
Hpy188I TCNGA 4 cut(s) 468, 651, 1074, 1170
Hpy188III TCNNGA 3 cut(s) 15, 1115, 1127
Hpy8I GTNNAC 2 cut(s) 140, 595
Hpy99I CGWCG 2 cut(s) 819, 1074
HpyAV CCTTC 1 cut(s) 1005
HpyCH4III ACNGT 2 cut(s) 199, 1181
HpyCH4IV ACGT 3 cut(s) 314, 461, 1018
HpyCH4V TGCA 7 cut(s) 32, 54, 224, 497, 513, 708, 717
HpyF10VI GCNNNNNNNGC 6 cut(s) 227, 230, 411, 714, 820, 941
HpyF3I CTNAG 2 cut(s) 384, 909
HpySE526I ACGT 3 cut(s) 314, 461, 1018
Hsp92I GRCGYC 2 cut(s) 817, 1069
Hsp92II CATG 4 cut(s) 221, 266, 394, 441
KpnI GGTACC 1 cut(s) 105
KroI GCCGGC 1 cut(s) 819
KroNI GCCGGC 1 cut(s) 821
Kzo9I GATC 5 cut(s) 211, 352, 1105, 1123, 1165
LguI GCTCTTC 2 cut(s) 789, 930
LmnI GCTCC 1 cut(s) 631
Lsp1109I GCAGC 2 cut(s) 208, 1047
LweI GCATC 1 cut(s) 181
MabI ACCWGGT 1 cut(s) 730
MaeII ACGT 3 cut(s) 314, 461, 1018
MaeIII GTNAC 5 cut(s) 169, 199, 334, 734, 773
MalI GATC 5 cut(s) 213, 354, 1107, 1125, 1167
MbiI CCGCTC 1 cut(s) 1031
MboI GATC 5 cut(s) 211, 352, 1105, 1123, 1165
MboII GAAGA 8 cut(s) 130, 221, 803, 806, 845, 848, 886, 917
MflI RGATCY 1 cut(s) 211
MhlI GDGCHC 4 cut(s) 71, 532, 628, 925
MluCI AATT 3 cut(s) 147, 490, 881
MlyI GAGTC 4 cut(s) 302, 590, 633, 1084
MmeI TCCRAC 1 cut(s) 1052
MreI CGCCGGCG 1 cut(s) 819
MroNI GCCGGC 1 cut(s) 819
MseI TTAA 2 cut(s) 246, 684
MslI CAYNNNNRTG 1 cut(s) 267
MspA1I CMGCKG 1 cut(s) 519
MspI CCGG 4 cut(s) 62, 416, 820, 1156
MspR9I CCNGG 7 cut(s) 324, 416, 417, 429, 732, 930, 1157
Mva1269I GAATGC 2 cut(s) 224, 497
MvaI CCWGG 4 cut(s) 324, 429, 732, 930
MvnI CGCG 1 cut(s) 230
MwoI GCNNNNNNNGC 6 cut(s) 227, 230, 411, 714, 820, 941
NaeI GCCGGC 1 cut(s) 821
NciI CCSGG 3 cut(s) 416, 417, 1157
NdeI CATATG 1 cut(s) 205
NdeII GATC 5 cut(s) 211, 352, 1105, 1123, 1165
NgoMIV GCCGGC 1 cut(s) 819
NlaIII CATG 4 cut(s) 221, 266, 394, 441
NlaIV GGNNCC 4 cut(s) 103, 584, 1154, 1178
NmuCI GTSAC 2 cut(s) 169, 734
NspI RCATGY 1 cut(s) 221
PaeR7I CTCGAG 1 cut(s) 1113
PasI CCCWGGG 1 cut(s) 323
PciSI GCTCTTC 2 cut(s) 789, 930
PctI GAATGC 2 cut(s) 224, 497
PdiI GCCGGC 1 cut(s) 821
Pfl23II CGTACG 1 cut(s) 698
PflFI GACNNNGTC 1 cut(s) 732
PflMI CCANNNNNTGG 3 cut(s) 362, 674, 935
PkrI GCNGC 3 cut(s) 223, 232, 1037
PleI GAGTC 4 cut(s) 301, 590, 633, 1083
PpsI GAGTC 4 cut(s) 301, 590, 633, 1083
Psp6I CCWGG 4 cut(s) 322, 427, 730, 928
PspFI CCCAGC 1 cut(s) 935
PspGI CCWGG 4 cut(s) 322, 427, 730, 928
PspLI CGTACG 1 cut(s) 698
PspN4I GGNNCC 4 cut(s) 103, 584, 1154, 1178
PspPI GGNCC 7 cut(s) 26, 140, 413, 583, 614, 647, 1153
PstNI CAGNNNCTG 1 cut(s) 935
PsuI RGATCY 1 cut(s) 211
PsyI GACNNNGTC 1 cut(s) 732
RsaI GTAC 2 cut(s) 103, 700
RsaNI GTAC 2 cut(s) 102, 699
RseI CAYNNNNRTG 1 cut(s) 267
SapI GCTCTTC 2 cut(s) 789, 930
SaqAI TTAA 2 cut(s) 246, 684
SatI GCNGC 3 cut(s) 222, 231, 1036
Sau3AI GATC 5 cut(s) 211, 352, 1105, 1123, 1165
Sau96I GGNCC 7 cut(s) 26, 140, 413, 583, 614, 647, 1153
SchI GAGTC 4 cut(s) 302, 590, 633, 1084
ScrFI CCNGG 7 cut(s) 324, 416, 417, 429, 732, 930, 1157
SduI GDGCHC 4 cut(s) 71, 532, 628, 925
SexAI ACCWGGT 1 cut(s) 730
SfaNI GCATC 1 cut(s) 181
SfcI CTRYAG 1 cut(s) 630
Sfr274I CTCGAG 1 cut(s) 1113
SgrAI CRCCGGYG 1 cut(s) 819
SinI GGWCC 4 cut(s) 140, 614, 647, 1153
SlaI CTCGAG 1 cut(s) 1113
SmaI CCCGGG 1 cut(s) 417
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 1 cut(s) 1113
SmoI CTYRAG 1 cut(s) 1113
Sse9I AATT 3 cut(s) 147, 490, 881
SsiI CCGC 7 cut(s) 230, 366, 405, 517, 823, 1031, 1144
SspI AATATT 1 cut(s) 95
StyD4I CCNGG 7 cut(s) 322, 414, 415, 427, 730, 928, 1155
TaaI ACNGT 2 cut(s) 199, 1181
TaiI ACGT 3 cut(s) 317, 464, 1021
TaqI TCGA 6 cut(s) 296, 532, 886, 1078, 1108, 1114
TaqII GACCGA 1 cut(s) 157
TasI AATT 3 cut(s) 147, 490, 881
TauI GCSGC 1 cut(s) 233
Tru1I TTAA 2 cut(s) 246, 684
Tru9I TTAA 2 cut(s) 246, 684
TscAI CASTG 1 cut(s) 76
TseFI GTSAC 2 cut(s) 169, 734
TseI GCWGC 2 cut(s) 221, 1035
Tsp45I GTSAC 2 cut(s) 169, 734
TspDTI ATGAA 6 cut(s) 90, 222, 251, 272, 407, 804
TspGWI ACGGA 1 cut(s) 491
TspMI CCCGGG 1 cut(s) 415
TspRI CASTG 1 cut(s) 76
Tth111I GACNNNGTC 1 cut(s) 732
Van91I CCANNNNNTGG 3 cut(s) 362, 674, 935
VpaK11BI GGWCC 4 cut(s) 140, 614, 647, 1153
XapI RAATTY 2 cut(s) 147, 881
XceI RCATGY 1 cut(s) 221
XhoI CTCGAG 1 cut(s) 1113
XmaI CCCGGG 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.