Prupe.1G345000_v2.0.a1

Transcription initiation factor TFIID subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
32291581 .. 32296072
4492 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G345000.1

Sequence Viewer

Length: 1206 bp
ATGGCAACCTATCCAGGAAAAGGAGCTCCTTCAAATGGGTCTGTCTATGTTTGCAACTTGCCTGAGGGGACTGATGAAAATATGTTGGCTGAATATTTTGGCACCATTGGGTTGTTAAAGAAAGACAAGCGAACAGGCCGACCAAAAATTTGGCTATACCGAGACAAACTGACAAACGAACCTAAGGGAGATGCTACTGTAACATATGAAGATCCACATGCTGCATCAGCAGCCGTTGAATGGTTTAACGACAAGGATTTCCATGGTAATGCCATTGGGGTTTTTATAGCAGAGTCAAAAAGCAAAGATGATCAGATTCATAATCCTGTGGGCGATCCAATTGTTGGTGGTGAGTATGATGGACTCGAGGAAATTGCTCAGGATACAAATGGAGGTGTTGGCGGCGGTAGAGGTCGGGGTGATGCTCCTGGGAAAGCATGGCAACAAGAGGGAGACTGGACATGTCCGAATACAAGCAGCTGTTCCAACGTGAATTTTGCATTTCGCGGTGTGTGCAATCGCTGCGGAAGTGCTCGACCTACTGGTGCTTCCGGTGGTGGCGCAGGAGGTGGTGGTCGTGGTAGGGGTCGTGGACTTGACTCTGGGGGCCGTGGTGGTCCTGTTGGTGCTCCTACAGGTGGACTCTTTGGTCCAAATGATTGGCCTTGTCCAATGTGTGGCAACATCAACTGGGCAAAGCGTACAAAATGCAACATATGCAACACAAATAGACCTGGTCACAATGAAGGTGGTGTAAGAGGGGGGCGTGGTGGGGGTTACAAAGAACTTGATGAAGAAGAATTAGAGGAAATCAAGCGACGTCGGCGGGAGGCAGAAGAAGATGATGGTGAGATGTATGATGAGTTTGGCAACCTTAAGAAAAAATTTCGCGCTAAAACACAACAAACTGAAACTGGACGAGCTCTTCCAGGTGCTGGACGTGCTGGATGGGAGGTGGAGGAAATAGGTGTAATTGACAGAGATGGCAGGGAGAGAAATAGAGAGAGAGGAAGGGAACGCGACGATAGACCGAGCAGCAAGAACAGAGAAAGAGATGACAGGGATAGGCGTCGCAGTAGAAGCAGAGAAAGGGAAAGGGATAGGGGGAGAGATAGACCTCGAGATTATGATTATGATCGGGACAAAGATTATGGGCGGGACAGGGACAGGGACAGGGATCGAGACCGGAACAGGCACCGTTACTGA

Protein Analysis

402

Amino Acids

44.55

Weight (kDa)

8.28

Isoelectric Point (pI)

38.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 648
AatII GACGTC 1 cut(s) 823
AccB1I GGYRCC 2 cut(s) 101, 1194
AccB7I CCANNNNNTGG 3 cut(s) 344, 677, 935
AccII CGCG 3 cut(s) 507, 891, 1020
AciI CCGC 6 cut(s) 402, 405, 507, 525, 826, 1156
AclWI GGATC 3 cut(s) 206, 329, 1185
AcsI RAATTY 3 cut(s) 147, 493, 884
AcyI GRCGYC 2 cut(s) 820, 1069
AfaI GTAC 1 cut(s) 703
AfiI CCNNNNNNNGG 7 cut(s) 20, 35, 240, 344, 638, 677, 935
AflII CTTAAG 1 cut(s) 875
AflIII ACRYGT 1 cut(s) 461
AgsI TTSAA 2 cut(s) 33, 239
AjiI CACGTC 1 cut(s) 941
AjnI CCWGG 4 cut(s) 13, 427, 733, 928
AluBI AGCT 3 cut(s) 26, 480, 923
AluI AGCT 3 cut(s) 26, 480, 923
Alw21I GWGCWC 4 cut(s) 28, 535, 631, 925
Alw26I GTCTC 3 cut(s) 156, 447, 1176
AlwI GGATC 3 cut(s) 206, 329, 1185
AlwNI CAGNNNCTG 1 cut(s) 935
Ama87I CYCGRG 2 cut(s) 365, 1119
AoxI GGCC 3 cut(s) 136, 607, 662
ApeKI GCWGC 5 cut(s) 221, 230, 477, 522, 1035
ApoI RAATTY 3 cut(s) 147, 493, 884
ArsI GACNNNNNNTTYG 2 cut(s) 132, 164
AspLEI GCGC 2 cut(s) 563, 893
AspS9I GGNCC 3 cut(s) 607, 617, 650
AsuHPI GGTGA 3 cut(s) 362, 431, 860
AvaI CYCGRG 2 cut(s) 365, 1119
AvaII GGWCC 2 cut(s) 617, 650
AxyI CCTNAGG 2 cut(s) 63, 183
BanI GGYRCC 2 cut(s) 101, 1194
BanII GRGCYC 2 cut(s) 28, 925
Bbv12I GWGCWC 4 cut(s) 28, 535, 631, 925
BbvI GCAGC 5 cut(s) 208, 242, 489, 509, 1047
BccI CCATC 4 cut(s) 353, 839, 942, 977
BceAI ACGGC 2 cut(s) 218, 594
BcgI CGANNNNNNTGC 2 cut(s) 356, 390
BciT130I CCWGG 4 cut(s) 15, 429, 735, 930
BciVI GTATCC 1 cut(s) 376
BclI TGATCA 1 cut(s) 310
BcoDI GTCTC 3 cut(s) 156, 447, 1176
BfmI CTRYAG 1 cut(s) 633
BfrI CTTAAG 1 cut(s) 875
BfuI GTATCC 1 cut(s) 376
BisI GCNGC 6 cut(s) 222, 231, 403, 478, 523, 1036
BlsI GCNGC 6 cut(s) 223, 232, 404, 479, 524, 1037
Bme1390I CCNGG 4 cut(s) 15, 429, 735, 930
Bme18I GGWCC 2 cut(s) 617, 650
BmeT110I CYCGRG 2 cut(s) 365, 1119
BmgBI CACGTC 1 cut(s) 941
BmgT120I GGNCC 3 cut(s) 607, 617, 650
BmiI GGNNCC 3 cut(s) 103, 608, 1196
BmrFI CCNGG 4 cut(s) 15, 429, 735, 930
BmrI ACTGGG 1 cut(s) 700
BmsI GCATC 3 cut(s) 181, 233, 412
BmuI ACTGGG 1 cut(s) 700
Bpu10I CCTNAGC 1 cut(s) 378
BsaBI GATNNNNATC 1 cut(s) 1134
BsaHI GRCGYC 2 cut(s) 820, 1069
BsaI GGTCTC 1 cut(s) 1176
BsaJI CCNNGG 3 cut(s) 262, 428, 610
BsaWI WCCGGW 2 cut(s) 551, 1185
Bsc4I CCNNNNNNNGG 7 cut(s) 20, 35, 240, 344, 638, 677, 935
Bse1I ACTGG 4 cut(s) 461, 547, 695, 919
Bse21I CCTNAGG 2 cut(s) 63, 183
Bse8I GATNNNNATC 1 cut(s) 1134
BseBI CCWGG 4 cut(s) 15, 429, 735, 930
BseDI CCNNGG 3 cut(s) 262, 428, 610
BseGI GGATG 1 cut(s) 953
BseJI GATNNNNATC 1 cut(s) 1134
BseLI CCNNNNNNNGG 7 cut(s) 20, 35, 240, 344, 638, 677, 935
BseMII CTCAG 2 cut(s) 54, 392
BseNI ACTGG 4 cut(s) 461, 547, 695, 919
BseXI GCAGC 5 cut(s) 208, 242, 489, 509, 1047
Bsh1236I CGCG 3 cut(s) 507, 891, 1020
BshFI GGCC 3 cut(s) 138, 609, 664
BshNI GGYRCC 2 cut(s) 101, 1194
BsiHKAI GWGCWC 4 cut(s) 28, 535, 631, 925
BsiHKCI CYCGRG 2 cut(s) 365, 1119
BsiSI CCGG 2 cut(s) 552, 1186
BslFI GGGAC 5 cut(s) 82, 1154, 1172, 1178, 1184
BslI CCNNNNNNNGG 7 cut(s) 20, 35, 240, 344, 638, 677, 935
BsmAI GTCTC 3 cut(s) 156, 447, 1176
BsmFI GGGAC 5 cut(s) 82, 1154, 1172, 1178, 1184
BsnI GGCC 3 cut(s) 138, 609, 664
Bso31I GGTCTC 1 cut(s) 1176
BsoBI CYCGRG 2 cut(s) 365, 1119
Bsp1286I GDGCHC 4 cut(s) 28, 535, 631, 925
Bsp143I GATC 5 cut(s) 211, 310, 334, 1135, 1177
Bsp19I CCATGG 1 cut(s) 262
BspACI CCGC 6 cut(s) 402, 405, 507, 525, 826, 1156
BspANI GGCC 3 cut(s) 138, 609, 664
BspCNI CTCAG 2 cut(s) 55, 391
BspFNI CGCG 3 cut(s) 507, 891, 1020
BspLI GGNNCC 3 cut(s) 103, 608, 1196
BspPI GGATC 3 cut(s) 206, 329, 1185
BspQI GCTCTTC 1 cut(s) 930
BspT107I GGYRCC 2 cut(s) 101, 1194
BspTI CTTAAG 1 cut(s) 875
BspTNI GGTCTC 1 cut(s) 1176
BsrI ACTGG 4 cut(s) 461, 547, 695, 919
BssECI CCNNGG 3 cut(s) 262, 428, 610
BssMI GATC 5 cut(s) 211, 310, 334, 1135, 1177
BssNI GRCGYC 2 cut(s) 820, 1069
BssT1I CCWWGG 1 cut(s) 262
Bst2UI CCWGG 4 cut(s) 15, 429, 735, 930
Bst4CI ACNGT 2 cut(s) 199, 1199
Bst6I CTCTTC 1 cut(s) 930
BstACI GRCGYC 2 cut(s) 820, 1069
BstAFI CTTAAG 1 cut(s) 875
BstAPI GCANNNNNTGC 2 cut(s) 522, 717
BstDEI CTNAG 3 cut(s) 63, 183, 378
BstDSI CCRYGG 2 cut(s) 262, 610
BstF5I GGATG 1 cut(s) 953
BstFNI CGCG 3 cut(s) 507, 891, 1020
BstHHI GCGC 2 cut(s) 563, 893
BstKTI GATC 5 cut(s) 214, 313, 337, 1138, 1180
BstMAI GTCTC 3 cut(s) 156, 447, 1176
BstMBI GATC 5 cut(s) 211, 310, 334, 1135, 1177
BstMWI GCNNNNNNNGC 8 cut(s) 227, 230, 513, 522, 717, 823, 941, 1080
BstNI CCWGG 4 cut(s) 15, 429, 735, 930
BstNSI RCATGY 2 cut(s) 221, 465
BstSCI CCNGG 4 cut(s) 13, 427, 733, 928
BstSFI CTRYAG 1 cut(s) 633
BstUI CGCG 3 cut(s) 507, 891, 1020
BstV1I GCAGC 5 cut(s) 208, 242, 489, 509, 1047
BstX2I RGATCY 1 cut(s) 211
BstXI CCANNNNNNTGG 2 cut(s) 150, 660
BstYI RGATCY 1 cut(s) 211
Bsu36I CCTNAGG 2 cut(s) 63, 183
BsuI GTATCC 1 cut(s) 376
BsuRI GGCC 3 cut(s) 138, 609, 664
BtgI CCRYGG 2 cut(s) 262, 610
BtrI CACGTC 1 cut(s) 941
BtsCI GGATG 1 cut(s) 953
CaiI CAGNNNCTG 1 cut(s) 935
CfoI GCGC 2 cut(s) 563, 893
Cfr13I GGNCC 3 cut(s) 607, 617, 650
CseI GACGC 1 cut(s) 1058
CsiI ACCWGGT 1 cut(s) 733
Csp6I GTAC 1 cut(s) 702
CspCI CAANNNNNGTGG 2 cut(s) 730, 765
CviAII CATG 4 cut(s) 218, 263, 438, 462
CviJI RGCY 9 cut(s) 26, 89, 138, 154, 233, 480, 609, 664, 923
CviKI_1 RGCY 9 cut(s) 26, 89, 138, 154, 233, 480, 609, 664, 923
CviQI GTAC 1 cut(s) 702
DdeI CTNAG 3 cut(s) 63, 183, 378
DpnI GATC 5 cut(s) 213, 312, 336, 1137, 1179
DpnII GATC 5 cut(s) 211, 310, 334, 1135, 1177
DrdI GACNNNNNNGTC 1 cut(s) 648
DseDI GACNNNNNNGTC 1 cut(s) 648
Eam1104I CTCTTC 1 cut(s) 930
EarI CTCTTC 1 cut(s) 930
Ecl136II GAGCTC 2 cut(s) 26, 923
Eco130I CCWWGG 1 cut(s) 262
Eco24I GRGCYC 2 cut(s) 28, 925
Eco31I GGTCTC 1 cut(s) 1176
Eco47I GGWCC 2 cut(s) 617, 650
Eco53kI GAGCTC 2 cut(s) 26, 923
Eco81I CCTNAGG 2 cut(s) 63, 183
Eco88I CYCGRG 2 cut(s) 365, 1119
EcoICRI GAGCTC 2 cut(s) 26, 923
EcoRII CCWGG 4 cut(s) 13, 427, 733, 928
EcoT14I CCWWGG 1 cut(s) 262
EcoT38I GRGCYC 2 cut(s) 28, 925
ErhI CCWWGG 1 cut(s) 262
FaeI CATG 4 cut(s) 221, 266, 441, 465
FaqI GGGAC 5 cut(s) 82, 1154, 1172, 1178, 1184
FatI CATG 4 cut(s) 217, 262, 437, 461
FauI CCCGC 2 cut(s) 819, 1149
FauNDI CATATG 2 cut(s) 205, 716
FbaI TGATCA 1 cut(s) 310
Fnu4HI GCNGC 6 cut(s) 222, 231, 403, 478, 523, 1036
FokI GGATG 1 cut(s) 960
FriOI GRGCYC 2 cut(s) 28, 925
Fsp4HI GCNGC 6 cut(s) 222, 231, 403, 478, 523, 1036
GlaI GCGC 2 cut(s) 562, 892
GluI GCNGC 6 cut(s) 222, 231, 403, 478, 523, 1036
HaeIII GGCC 3 cut(s) 138, 609, 664
HapII CCGG 2 cut(s) 552, 1186
HgaI GACGC 1 cut(s) 1058
HhaI GCGC 2 cut(s) 563, 893
Hin1I GRCGYC 2 cut(s) 820, 1069
Hin1II CATG 4 cut(s) 221, 266, 441, 465
Hin6I GCGC 2 cut(s) 561, 891
HinP1I GCGC 2 cut(s) 561, 891
HinfI GANTC 5 cut(s) 293, 316, 363, 599, 642
HpaII CCGG 2 cut(s) 552, 1186
HphI GGTGA 3 cut(s) 362, 431, 860
Hpy166II GTNNAC 2 cut(s) 593, 641
Hpy188I TCNGA 2 cut(s) 315, 468
Hpy188III TCNNGA 4 cut(s) 380, 1121, 1139, 1181
Hpy8I GTNNAC 2 cut(s) 593, 641
Hpy99I CGWCG 4 cut(s) 822, 825, 1025, 1074
HpyAV CCTTC 3 cut(s) 39, 740, 1005
HpyCH4III ACNGT 2 cut(s) 199, 1199
HpyCH4IV ACGT 3 cut(s) 489, 820, 940
HpyCH4V TGCA 6 cut(s) 54, 224, 500, 516, 711, 720
HpyF10VI GCNNNNNNNGC 8 cut(s) 227, 230, 513, 522, 717, 823, 941, 1080
HpyF3I CTNAG 3 cut(s) 63, 183, 378
HpySE526I ACGT 3 cut(s) 489, 820, 940
Hsp92I GRCGYC 2 cut(s) 820, 1069
Hsp92II CATG 4 cut(s) 221, 266, 441, 465
HspAI GCGC 2 cut(s) 561, 891
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 5 cut(s) 211, 310, 334, 1135, 1177
LguI GCTCTTC 1 cut(s) 930
LmnI GCTCC 4 cut(s) 23, 31, 430, 634
Lsp1109I GCAGC 5 cut(s) 208, 242, 489, 509, 1047
LweI GCATC 3 cut(s) 181, 233, 412
MabI ACCWGGT 1 cut(s) 733
MaeII ACGT 3 cut(s) 489, 820, 940
MaeIII GTNAC 4 cut(s) 199, 737, 776, 1199
MalI GATC 5 cut(s) 213, 312, 336, 1137, 1179
MboI GATC 5 cut(s) 211, 310, 334, 1135, 1177
MboII GAAGA 6 cut(s) 221, 806, 809, 848, 851, 917
MfeI CAATTG 1 cut(s) 339
MflI RGATCY 1 cut(s) 211
MhlI GDGCHC 4 cut(s) 28, 535, 631, 925
MluCI AATT 7 cut(s) 147, 339, 372, 493, 800, 884, 972
MlyI GAGTC 4 cut(s) 302, 357, 593, 636
MmeI TCCRAC 1 cut(s) 510
MseI TTAA 3 cut(s) 116, 246, 876
MslI CAYNNNNRTG 1 cut(s) 267
MspA1I CMGCKG 1 cut(s) 480
MspCI CTTAAG 1 cut(s) 875
MspI CCGG 2 cut(s) 552, 1186
MspR9I CCNGG 4 cut(s) 15, 429, 735, 930
MunI CAATTG 1 cut(s) 339
MvaI CCWGG 4 cut(s) 15, 429, 735, 930
MvnI CGCG 3 cut(s) 507, 891, 1020
MwoI GCNNNNNNNGC 8 cut(s) 227, 230, 513, 522, 717, 823, 941, 1080
NcoI CCATGG 1 cut(s) 262
NdeI CATATG 2 cut(s) 205, 716
NdeII GATC 5 cut(s) 211, 310, 334, 1135, 1177
NlaIII CATG 4 cut(s) 221, 266, 441, 465
NlaIV GGNNCC 3 cut(s) 103, 608, 1196
NmuCI GTSAC 1 cut(s) 737
NspI RCATGY 2 cut(s) 221, 465
PaeR7I CTCGAG 2 cut(s) 365, 1119
PciI ACATGT 1 cut(s) 461
PciSI GCTCTTC 1 cut(s) 930
PfeI GAWTC 1 cut(s) 316
PflFI GACNNNGTC 1 cut(s) 735
PflMI CCANNNNNTGG 3 cut(s) 344, 677, 935
PfoI TCCNGGA 1 cut(s) 13
PkrI GCNGC 6 cut(s) 223, 232, 404, 479, 524, 1037
PleI GAGTC 4 cut(s) 301, 357, 593, 636
PpsI GAGTC 4 cut(s) 301, 357, 593, 636
PscI ACATGT 1 cut(s) 461
Psp124BI GAGCTC 2 cut(s) 28, 925
Psp6I CCWGG 4 cut(s) 13, 427, 733, 928
PspGI CCWGG 4 cut(s) 13, 427, 733, 928
PspN4I GGNNCC 3 cut(s) 103, 608, 1196
PspPI GGNCC 3 cut(s) 607, 617, 650
PspXI VCTCGAGB 1 cut(s) 365
PstNI CAGNNNCTG 1 cut(s) 935
PsuI RGATCY 1 cut(s) 211
PsyI GACNNNGTC 1 cut(s) 735
PvuII CAGCTG 1 cut(s) 480
RsaI GTAC 1 cut(s) 703
RsaNI GTAC 1 cut(s) 702
RseI CAYNNNNRTG 1 cut(s) 267
SacI GAGCTC 2 cut(s) 28, 925
SapI GCTCTTC 1 cut(s) 930
SaqAI TTAA 3 cut(s) 116, 246, 876
SatI GCNGC 6 cut(s) 222, 231, 403, 478, 523, 1036
Sau3AI GATC 5 cut(s) 211, 310, 334, 1135, 1177
Sau96I GGNCC 3 cut(s) 607, 617, 650
SchI GAGTC 4 cut(s) 302, 357, 593, 636
ScrFI CCNGG 4 cut(s) 15, 429, 735, 930
SduI GDGCHC 4 cut(s) 28, 535, 631, 925
SexAI ACCWGGT 1 cut(s) 733
SfaNI GCATC 3 cut(s) 181, 233, 412
SfcI CTRYAG 1 cut(s) 633
Sfr274I CTCGAG 2 cut(s) 365, 1119
SinI GGWCC 2 cut(s) 617, 650
SlaI CTCGAG 2 cut(s) 365, 1119
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 3 cut(s) 365, 875, 1119
SmoI CTYRAG 3 cut(s) 365, 875, 1119
Sse9I AATT 7 cut(s) 147, 339, 372, 493, 800, 884, 972
SsiI CCGC 6 cut(s) 402, 405, 507, 525, 826, 1156
SspI AATATT 1 cut(s) 95
SstI GAGCTC 2 cut(s) 28, 925
StyD4I CCNGG 4 cut(s) 13, 427, 733, 928
StyI CCWWGG 1 cut(s) 262
TaaI ACNGT 2 cut(s) 199, 1199
TaiI ACGT 3 cut(s) 492, 823, 943
TaqI TCGA 4 cut(s) 366, 535, 1120, 1180
TaqII GACCGA 1 cut(s) 1045
TasI AATT 7 cut(s) 147, 339, 372, 493, 800, 884, 972
TauI GCSGC 1 cut(s) 405
TfiI GAWTC 1 cut(s) 316
Tru1I TTAA 3 cut(s) 116, 246, 876
Tru9I TTAA 3 cut(s) 116, 246, 876
TseFI GTSAC 1 cut(s) 737
TseI GCWGC 5 cut(s) 221, 230, 477, 522, 1035
Tsp45I GTSAC 1 cut(s) 737
TspDTI ATGAA 5 cut(s) 90, 222, 308, 759, 807
Tth111I GACNNNGTC 1 cut(s) 735
Van91I CCANNNNNTGG 3 cut(s) 344, 677, 935
Vha464I CTTAAG 1 cut(s) 875
VpaK11BI GGWCC 2 cut(s) 617, 650
XapI RAATTY 3 cut(s) 147, 493, 884
XceI RCATGY 2 cut(s) 221, 465
XhoI CTCGAG 2 cut(s) 365, 1119
ZraI GACGTC 1 cut(s) 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.