Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008058

Physical Location & Seq

Genomic Coordinates Forward (+)

18949532 .. 18951891

Gene Structure 2360 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G51160.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCAGTTCTTCGGTGGATCTGAGATTAGTCCGTCGCCGCCAGTTCCGACGGCGAGTGGAAACAACGCGCACATGATGTACGTTTTCAATCGTAACGGTGTATGTCTTCTCTACAAAGAATGGAATCGGCCTCTTCATACACTTAATCCTCAGCAAGATCACAAGCTCATGTTTGGTCTTCTCTTCTCTCTCAAATCTCTCACCGCTAAGATGGATCCAGTCAATGCGGATAAAGGAAATCTTGGGGTTCCACAGTTGCCAGGACAAGGTTGCTCTTTCCATAGTTTCCGTACGAATACTTACAAGCTAAGTTTCATGGAGACTCCCTCTGGTATTAAGATTATCTTAGTAACTCATCCAAAGACCGGAGATTTACGCGAATCCTTGAAGTACATCTACAGTTTATACGTTGAATATGTCGTAAAAAATCCTATATACAGCCCAGGATCTCCAATCAAGTCGGAGTTGTTCAACACTGCACTTGACCAGTACGTAAGGAGCATCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006888 GO:0008150 GO:0016192 GO:0017016 GO:0017112 GO:0017137 GO:0019899 GO:0030008 GO:0031267 GO:0032991 GO:0044424 GO:0044464 GO:0046907 GO:0048193 GO:0051020 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065007 GO:0065009 GO:0098772 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sybindin

Protein Analysis

169

Amino Acids

18.96

Weight (kDa)

9.21

Isoelectric Point (pI)

38.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sybindin	PF04099	24 - 167	1.1e-53	Sybindin-like family
Sedlin_N	PF04628	98 - 166	1.1e-07	Sedlin, N-terminal conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51160 AT1G51160 AT1G51160
fragaria_vesca	FvH4_7g30501 FvH4_7g30501
malus_domestica	MD01G1210500.v1.1 MD07G1280700.v1.1
prunus_persica	Prupe.2G302900_v2.0.a1
pyrus_communis	pycom01g22100 pycom07g25530
rosa_chinensis	RchiOBHm_Chr1g0378911
rosa_laevigata	RLG00000026409
rosa_multiflora	Rmu_sc0000556.1_g000033 Rmu_sc0000556.1_g000034
rosa_rugosa	Rorug01G0411100 Rorug01G0411200 Rorug01G0411300 Rorug01G0411400
rosa_samantha	Rh1AG433900 Rh1BG391500 Rh1CG404300 Rh1DG422700
rosa_wichuraiana	Rw0G000100 Rw1G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	68, 378
AciI	CCGC	3 cut(s)	38, 204, 227
AclWI	GGATC	4 cut(s)	25, 209, 222, 454
AfaI	GTAC	4 cut(s)	80, 292, 392, 491
AfiI	CCNNNNNNNGG	2 cut(s)	266, 365
AgsI	TTSAA	4 cut(s)	88, 388, 413, 472
AjnI	CCWGG	2 cut(s)	259, 442
AluBI	AGCT	2 cut(s)	166, 307
AluI	AGCT	2 cut(s)	166, 307
Alw26I	GTCTC	1 cut(s)	314
AlwI	GGATC	4 cut(s)	25, 209, 222, 454
AoxI	GGCC	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	193
BamHI	GGATCC	1 cut(s)	214
BarI	GAAGNNNNNNTAC	2 cut(s)	380, 412
BbsI	GAAGAC	2 cut(s)	98, 170
BbvCI	CCTCAGC	1 cut(s)	150
BccI	CCATC	1 cut(s)	205
BceAI	ACGGC	1 cut(s)	66
BciT130I	CCWGG	2 cut(s)	261, 444
BcoDI	GTCTC	1 cut(s)	314
BfmI	CTRYAG	1 cut(s)	397
BisI	GCNGC	1 cut(s)	38
BlsI	GCNGC	1 cut(s)	39
Bme1390I	CCNGG	2 cut(s)	261, 444
BmiI	GGNNCC	2 cut(s)	216, 249
BmrFI	CCNGG	2 cut(s)	261, 444
BpiI	GAAGAC	2 cut(s)	98, 170
BplI	GAGNNNNNCTC	2 cut(s)	311, 343
Bpu10I	CCTNAGC	1 cut(s)	150
BsaAI	YACGTR	1 cut(s)	493
BsaJI	CCNNGG	1 cut(s)	442
BsaWI	WCCGGW	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	2 cut(s)	266, 365
Bse1I	ACTGG	3 cut(s)	41, 218, 487
BseBI	CCWGG	2 cut(s)	261, 444
BseDI	CCNNGG	1 cut(s)	442
BseGI	GGATG	1 cut(s)	355
BseLI	CCNNNNNNNGG	2 cut(s)	266, 365
BseMII	CTCAG	2 cut(s)	12, 164
BseNI	ACTGG	3 cut(s)	41, 218, 487
BsgI	GTGCAG	1 cut(s)	462
Bsh1236I	CGCG	2 cut(s)	68, 378
BshFI	GGCC	1 cut(s)	130
BsiSI	CCGG	1 cut(s)	366
BsiWI	CGTACG	1 cut(s)	290
BslI	CCNNNNNNNGG	2 cut(s)	266, 365
BsmAI	GTCTC	1 cut(s)	314
BsnI	GGCC	1 cut(s)	130
Bsp143I	GATC	4 cut(s)	17, 157, 214, 446
BspACI	CCGC	3 cut(s)	38, 204, 227
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	2 cut(s)	13, 163
BspFNI	CGCG	2 cut(s)	68, 378
BspLI	GGNNCC	2 cut(s)	216, 249
BspPI	GGATC	4 cut(s)	25, 209, 222, 454
BsrI	ACTGG	3 cut(s)	41, 218, 487
BssECI	CCNNGG	1 cut(s)	442
BssMI	GATC	4 cut(s)	17, 157, 214, 446
Bst2UI	CCWGG	2 cut(s)	261, 444
Bst4CI	ACNGT	3 cut(s)	98, 255, 401
Bst6I	CTCTTC	2 cut(s)	138, 188
BstBAI	YACGTR	1 cut(s)	493
BstDEI	CTNAG	6 cut(s)	21, 150, 207, 308, 346, 507
BstF5I	GGATG	1 cut(s)	355
BstFNI	CGCG	2 cut(s)	68, 378
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	4 cut(s)	20, 160, 217, 449
BstMAI	GTCTC	1 cut(s)	314
BstMBI	GATC	4 cut(s)	17, 157, 214, 446
BstNI	CCWGG	2 cut(s)	261, 444
BstSCI	CCNGG	2 cut(s)	259, 442
BstSFI	CTRYAG	1 cut(s)	397
BstSNI	TACGTA	1 cut(s)	493
BstUI	CGCG	2 cut(s)	68, 378
BstV2I	GAAGAC	2 cut(s)	98, 170
BstX2I	RGATCY	3 cut(s)	17, 214, 446
BstYI	RGATCY	3 cut(s)	17, 214, 446
BsuRI	GGCC	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	355
BtsI	GCAGTG	1 cut(s)	474
BtsIMutI	CAGTG	1 cut(s)	474
CfoI	GCGC	1 cut(s)	70
Csp6I	GTAC	4 cut(s)	79, 291, 391, 490
CviAII	CATG	3 cut(s)	73, 169, 316
CviJI	RGCY	4 cut(s)	130, 166, 307, 441
CviKI_1	RGCY	4 cut(s)	130, 166, 307, 441
CviQI	GTAC	4 cut(s)	79, 291, 391, 490
DdeI	CTNAG	6 cut(s)	21, 150, 207, 308, 346, 507
DpnI	GATC	4 cut(s)	19, 159, 216, 448
DpnII	GATC	4 cut(s)	17, 157, 214, 446
Eam1104I	CTCTTC	2 cut(s)	138, 188
EarI	CTCTTC	2 cut(s)	138, 188
Eco105I	TACGTA	1 cut(s)	493
EcoRII	CCWGG	2 cut(s)	259, 442
FaeI	CATG	3 cut(s)	76, 172, 319
FalI	AAGNNNNNCTT	4 cut(s)	225, 257, 329, 361
FatI	CATG	3 cut(s)	72, 168, 315
Fnu4HI	GCNGC	1 cut(s)	38
FokI	GGATG	1 cut(s)	342
Fsp4HI	GCNGC	1 cut(s)	38
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	1 cut(s)	366
HhaI	GCGC	1 cut(s)	70
Hin1II	CATG	3 cut(s)	76, 172, 319
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HinfI	GANTC	3 cut(s)	124, 322, 380
HpaII	CCGG	1 cut(s)	366
HphI	GGTGA	1 cut(s)	193
Hpy188I	TCNGA	3 cut(s)	22, 48, 463
Hpy99I	CGWCG	2 cut(s)	37, 52
HpyCH4III	ACNGT	3 cut(s)	98, 255, 401
HpyCH4IV	ACGT	3 cut(s)	81, 408, 492
HpyCH4V	TGCA	2 cut(s)	4, 479
HpyF3I	CTNAG	6 cut(s)	21, 150, 207, 308, 346, 507
HpySE526I	ACGT	3 cut(s)	81, 408, 492
Hsp92II	CATG	3 cut(s)	76, 172, 319
HspAI	GCGC	1 cut(s)	68
Kzo9I	GATC	4 cut(s)	17, 157, 214, 446
LmnI	GCTCC	1 cut(s)	498
LpnPI	CCDG	9 cut(s)	54, 231, 246, 273, 315, 379, 429, 456, 500
MaeII	ACGT	3 cut(s)	81, 408, 492
MaeIII	GTNAC	2 cut(s)	92, 349
MalI	GATC	4 cut(s)	19, 159, 216, 448
MboI	GATC	4 cut(s)	17, 157, 214, 446
MboII	GAAGA	4 cut(s)	98, 125, 170, 175
MflI	RGATCY	3 cut(s)	17, 214, 446
MlyI	GAGTC	1 cut(s)	316
MmeI	TCCRAC	2 cut(s)	71, 441
MnlI	CCTC	3 cut(s)	141, 159, 337
MseI	TTAA	2 cut(s)	144, 336
MspI	CCGG	1 cut(s)	366
MspR9I	CCNGG	2 cut(s)	261, 444
MvaI	CCWGG	2 cut(s)	261, 444
MvnI	CGCG	2 cut(s)	68, 378
NdeII	GATC	4 cut(s)	17, 157, 214, 446
NlaIII	CATG	3 cut(s)	76, 172, 319
NlaIV	GGNNCC	2 cut(s)	216, 249
PfeI	GAWTC	2 cut(s)	124, 380
Pfl23II	CGTACG	1 cut(s)	290
PkrI	GCNGC	1 cut(s)	39
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
Ppu21I	YACGTR	1 cut(s)	493
Psp6I	CCWGG	2 cut(s)	259, 442
PspGI	CCWGG	2 cut(s)	259, 442
PspLI	CGTACG	1 cut(s)	290
PspN4I	GGNNCC	2 cut(s)	216, 249
PsuI	RGATCY	3 cut(s)	17, 214, 446
RsaI	GTAC	4 cut(s)	80, 292, 392, 491
RsaNI	GTAC	4 cut(s)	79, 291, 391, 490
SaqAI	TTAA	2 cut(s)	144, 336
SatI	GCNGC	1 cut(s)	38
Sau3AI	GATC	4 cut(s)	17, 157, 214, 446
SchI	GAGTC	1 cut(s)	316
ScrFI	CCNGG	2 cut(s)	261, 444
SetI	ASST	6 cut(s)	84, 168, 271, 309, 411, 495
SfcI	CTRYAG	1 cut(s)	397
SnaBI	TACGTA	1 cut(s)	493
SsiI	CCGC	3 cut(s)	38, 204, 227
StyD4I	CCNGG	2 cut(s)	259, 442
TaaI	ACNGT	3 cut(s)	98, 255, 401
TaiI	ACGT	3 cut(s)	84, 411, 495
TatI	WGTACW	1 cut(s)	390
TauI	GCSGC	1 cut(s)	40
TfiI	GAWTC	2 cut(s)	124, 380
Tru1I	TTAA	2 cut(s)	144, 336
Tru9I	TTAA	2 cut(s)	144, 336
TscAI	CASTG	1 cut(s)	481
TspDTI	ATGAA	2 cut(s)	125, 304
TspGWI	ACGGA	2 cut(s)	21, 278
TspRI	CASTG	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.