Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0008058

Physical Location & Seq

Genomic Coordinates Forward (+)

25802168 .. 25803552

Gene Structure 1385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g25530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCAATTCTTCGGAGGAACGGAGATAAGCCCGTCGCTGCCGGCGTCGACGGCGTCGGGAAACAACGGGCACATGATGTACGTCTTTAACCGCAACGGCGTCTGCCTGCTCTACCGCGAGTGGAATCGGCCGCTTCACACCCTGAACCAGCAGCAGGATCACAAGCTAATGTTCGGTCTCCTCTTCTCCCTCAAGTCGCTCACCGCCAAGATGGACCCCACCACGCAGGACAAGTCCAACCTCGGCGTCCCTCAGCTGCCCGGGCAAGGCTGCTCCTTCCATAGCTTCCGCACCAACACCTACAAGCTCACTTTCATGGAGTCCCCTTCCGGCATTAAGATCATATTGGTTACTCATCCTAGAACTAGTGACTTGAGGGAGTCGTTGAAGTACATTTACAACTTGTATGTCGAGTACGTTGTGAAGAACCCGCTTTACACTCCCGGAACTCCAATCAGGTGTGAGCTATTCAACACGACTCTTGACCAGTACGTCAGGAGCATTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006888 GO:0008150 GO:0016192 GO:0017016 GO:0017112 GO:0017137 GO:0019899 GO:0030008 GO:0031267 GO:0032991 GO:0044424 GO:0044464 GO:0046907 GO:0048193 GO:0051020 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065007 GO:0065009 GO:0098772 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sybindin

Protein Analysis

170

Amino Acids

19.26

Weight (kDa)

9.17

Isoelectric Point (pI)

31.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sybindin	PF04099	24 - 167	4.2e-53	Sybindin-like family
Sedlin_N	PF04628	98 - 166	1.9e-06	Sedlin, N-terminal conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51160 AT1G51160 AT1G51160
fragaria_vesca	FvH4_7g30501 FvH4_7g30501
malus_domestica	MD01G1210500.v1.1 MD07G1280700.v1.1
prunus_persica	Prupe.2G302900_v2.0.a1
pyrus_communis	pycom01g22100 pycom07g25530
rosa_chinensis	RchiOBHm_Chr1g0378911
rosa_laevigata	RLG00000026409
rosa_multiflora	Rmu_sc0000556.1_g000033 Rmu_sc0000556.1_g000034
rosa_rugosa	Rorug01G0411100 Rorug01G0411200 Rorug01G0411300 Rorug01G0411400
rosa_samantha	Rh1AG433900 Rh1BG391500 Rh1CG404300 Rh1DG422700
rosa_wichuraiana	Rw0G000100 Rw1G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	491
AccI	GTMKAC	1 cut(s)	47
AccII	CGCG	1 cut(s)	117
AciI	CCGC	6 cut(s)	91, 115, 131, 204, 289, 431
AclWI	GGATC	1 cut(s)	165
AcoI	YGGCCR	1 cut(s)	128
AcyI	GRCGYC	4 cut(s)	44, 53, 99, 246
AfaI	GTAC	4 cut(s)	80, 392, 416, 491
AfiI	CCNNNNNNNGG	2 cut(s)	154, 266
AgsI	TTSAA	2 cut(s)	388, 472
AhlI	ACTAGT	1 cut(s)	365
AluBI	AGCT	5 cut(s)	166, 256, 285, 307, 466
AluI	AGCT	5 cut(s)	166, 256, 285, 307, 466
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	1 cut(s)	165
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	4 cut(s)	37, 151, 256, 270
AspS9I	GGNCC	1 cut(s)	214
AsuC2I	CCSGG	3 cut(s)	261, 262, 444
AsuHPI	GGTGA	1 cut(s)	193
AvaI	CYCGRG	1 cut(s)	260
AvaII	GGWCC	1 cut(s)	214
BaeGI	GKGCMC	1 cut(s)	72
BarI	GAAGNNNNNNTAC	2 cut(s)	380, 412
BbvCI	CCTCAGC	1 cut(s)	252
BbvI	GCAGC	4 cut(s)	24, 163, 243, 257
BccI	CCATC	1 cut(s)	205
BceAI	ACGGC	2 cut(s)	66, 112
BcnI	CCSGG	3 cut(s)	261, 262, 444
BcoDI	GTCTC	1 cut(s)	182
BcuI	ACTAGT	1 cut(s)	365
BfaI	CTAG	2 cut(s)	360, 366
BisI	GCNGC	5 cut(s)	38, 131, 152, 257, 271
BlsI	GCNGC	5 cut(s)	39, 132, 153, 258, 272
Bme1390I	CCNGG	3 cut(s)	261, 262, 444
Bme18I	GGWCC	1 cut(s)	214
BmeT110I	CYCGRG	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	3 cut(s)	261, 262, 444
Bpu10I	CCTNAGC	1 cut(s)	252
BpuEI	CTTGAG	2 cut(s)	176, 394
BpuMI	CCSGG	3 cut(s)	261, 262, 444
BsaHI	GRCGYC	4 cut(s)	44, 53, 99, 246
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	2 cut(s)	241, 260
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 266
Bse118I	RCCGGY	1 cut(s)	40
Bse1I	ACTGG	1 cut(s)	487
BseDI	CCNNGG	2 cut(s)	241, 260
BseGI	GGATG	1 cut(s)	355
BseLI	CCNNNNNNNGG	2 cut(s)	154, 266
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	487
BseRI	GAGGAG	1 cut(s)	170
BseSI	GKGCMC	1 cut(s)	72
BseX3I	CGGCCG	1 cut(s)	128
BseXI	GCAGC	4 cut(s)	24, 163, 243, 257
Bsh1236I	CGCG	1 cut(s)	117
Bsh1285I	CGRYCG	1 cut(s)	131
BshFI	GGCC	1 cut(s)	130
BsiEI	CGRYCG	1 cut(s)	131
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	4 cut(s)	41, 261, 330, 444
BslFI	GGGAC	2 cut(s)	233, 307
BslI	CCNNNNNNNGG	2 cut(s)	154, 266
BsmAI	GTCTC	1 cut(s)	182
BsmFI	GGGAC	2 cut(s)	233, 307
BsnI	GGCC	1 cut(s)	130
Bso31I	GGTCTC	1 cut(s)	182
BsoBI	CYCGRG	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	2 cut(s)	157, 339
BspACI	CCGC	6 cut(s)	91, 115, 131, 204, 289, 431
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	1 cut(s)	117
BspLI	GGNNCC	1 cut(s)	216
BspPI	GGATC	1 cut(s)	165
BspTNI	GGTCTC	1 cut(s)	182
BsrFI	RCCGGY	1 cut(s)	40
BsrI	ACTGG	1 cut(s)	487
BssAI	RCCGGY	1 cut(s)	40
BssECI	CCNNGG	2 cut(s)	241, 260
BssMI	GATC	2 cut(s)	157, 339
BssNI	GRCGYC	4 cut(s)	44, 53, 99, 246
Bst6I	CTCTTC	1 cut(s)	188
BstACI	GRCGYC	4 cut(s)	44, 53, 99, 246
BstC8I	GCNNGC	2 cut(s)	42, 107
BstDEI	CTNAG	1 cut(s)	252
BstF5I	GGATG	1 cut(s)	355
BstFNI	CGCG	1 cut(s)	117
BstKTI	GATC	2 cut(s)	160, 342
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	2 cut(s)	157, 339
BstMCI	CGRYCG	1 cut(s)	131
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 262
BstSCI	CCNGG	3 cut(s)	259, 260, 442
BstSLI	GKGCMC	1 cut(s)	72
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	4 cut(s)	24, 163, 243, 257
BstZI	CGGCCG	1 cut(s)	128
BsuRI	GGCC	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	355
Cac8I	GCNNGC	2 cut(s)	42, 107
Cfr10I	RCCGGY	1 cut(s)	40
Cfr13I	GGNCC	1 cut(s)	214
Cfr9I	CCCGGG	1 cut(s)	260
CseI	GACGC	4 cut(s)	33, 42, 88, 235
Csp6I	GTAC	4 cut(s)	79, 391, 415, 490
CviAII	CATG	2 cut(s)	73, 316
CviJI	RGCY	8 cut(s)	30, 130, 166, 256, 270, 285, 307, 466
CviKI_1	RGCY	8 cut(s)	30, 130, 166, 256, 270, 285, 307, 466
CviQI	GTAC	4 cut(s)	79, 391, 415, 490
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	2 cut(s)	159, 341
DpnII	GATC	2 cut(s)	157, 339
DrdI	GACNNNNNNGTC	1 cut(s)	491
DseDI	GACNNNNNNGTC	1 cut(s)	491
EaeI	YGGCCR	1 cut(s)	128
EagI	CGGCCG	1 cut(s)	128
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
EclXI	CGGCCG	1 cut(s)	128
Eco31I	GGTCTC	1 cut(s)	182
Eco47I	GGWCC	1 cut(s)	214
Eco52I	CGGCCG	1 cut(s)	128
Eco88I	CYCGRG	1 cut(s)	260
FaeI	CATG	2 cut(s)	76, 319
FaiI	YATR	6 cut(s)	74, 282, 317, 344, 408, 508
FaqI	GGGAC	2 cut(s)	233, 307
FatI	CATG	2 cut(s)	72, 315
FauI	CCCGC	1 cut(s)	438
FblI	GTMKAC	1 cut(s)	47
Fnu4HI	GCNGC	5 cut(s)	38, 131, 152, 257, 271
FokI	GGATG	1 cut(s)	342
Fsp4HI	GCNGC	5 cut(s)	38, 131, 152, 257, 271
FspBI	CTAG	2 cut(s)	360, 366
GluI	GCNGC	5 cut(s)	38, 131, 152, 257, 271
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	4 cut(s)	41, 261, 330, 444
HgaI	GACGC	4 cut(s)	33, 42, 88, 235
Hin1I	GRCGYC	4 cut(s)	44, 53, 99, 246
Hin1II	CATG	2 cut(s)	76, 319
HincII	GTYRAC	1 cut(s)	48
HindII	GTYRAC	1 cut(s)	48
HinfI	GANTC	4 cut(s)	124, 320, 380, 478
HpaII	CCGG	4 cut(s)	41, 261, 330, 444
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	1 cut(s)	14
Hpy188III	TCNNGA	3 cut(s)	57, 482, 496
Hpy8I	GTNNAC	1 cut(s)	48
Hpy99I	CGWCG	4 cut(s)	37, 49, 52, 58
HpyAV	CCTTC	2 cut(s)	286, 336
HpyCH4IV	ACGT	3 cut(s)	81, 417, 492
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 262
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	3 cut(s)	81, 417, 492
Hsp92I	GRCGYC	4 cut(s)	44, 53, 99, 246
Hsp92II	CATG	2 cut(s)	76, 319
KroI	GCCGGC	1 cut(s)	40
KroNI	GCCGGC	1 cut(s)	42
Kzo9I	GATC	2 cut(s)	157, 339
LmnI	GCTCC	2 cut(s)	278, 498
Lsp1109I	GCAGC	4 cut(s)	24, 163, 243, 257
MaeI	CTAG	2 cut(s)	360, 366
MaeII	ACGT	3 cut(s)	81, 417, 492
MaeIII	GTNAC	2 cut(s)	349, 368
MalI	GATC	2 cut(s)	159, 341
MboI	GATC	2 cut(s)	157, 339
MboII	GAAGA	2 cut(s)	175, 436
MhlI	GDGCHC	1 cut(s)	72
MluCI	AATT	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	329, 389, 472
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	6 cut(s)	8, 191, 200, 251, 261, 369
MroNI	GCCGGC	1 cut(s)	40
MseI	TTAA	2 cut(s)	87, 336
MslI	CAYNNNNRTG	1 cut(s)	314
MspA1I	CMGCKG	1 cut(s)	256
MspI	CCGG	4 cut(s)	41, 261, 330, 444
MspR9I	CCNGG	3 cut(s)	261, 262, 444
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	2 cut(s)	50, 262
NaeI	GCCGGC	1 cut(s)	42
NciI	CCSGG	3 cut(s)	261, 262, 444
NdeII	GATC	2 cut(s)	157, 339
NgoMIV	GCCGGC	1 cut(s)	40
NlaIII	CATG	2 cut(s)	76, 319
NlaIV	GGNNCC	1 cut(s)	216
NmeAIII	GCCGAG	1 cut(s)	222
NmuCI	GTSAC	1 cut(s)	368
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PdiI	GCCGGC	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	124
PflFI	GACNNNGTC	1 cut(s)	52
PfoI	TCCNGGA	1 cut(s)	442
PkrI	GCNGC	5 cut(s)	39, 132, 153, 258, 272
PleI	GAGTC	3 cut(s)	328, 388, 472
PpsI	GAGTC	3 cut(s)	328, 388, 472
PspN4I	GGNNCC	1 cut(s)	216
PspPI	GGNCC	1 cut(s)	214
PsrI	GAACNNNNNNTAC	2 cut(s)	419, 451
PsyI	GACNNNGTC	1 cut(s)	52
PvuII	CAGCTG	1 cut(s)	256
RsaI	GTAC	4 cut(s)	80, 392, 416, 491
RsaNI	GTAC	4 cut(s)	79, 391, 415, 490
RseI	CAYNNNNRTG	1 cut(s)	314
SalI	GTCGAC	1 cut(s)	46
SaqAI	TTAA	2 cut(s)	87, 336
SatI	GCNGC	5 cut(s)	38, 131, 152, 257, 271
Sau3AI	GATC	2 cut(s)	157, 339
Sau96I	GGNCC	1 cut(s)	214
SchI	GAGTC	3 cut(s)	329, 389, 472
ScrFI	CCNGG	3 cut(s)	261, 262, 444
SduI	GDGCHC	1 cut(s)	72
SgrDI	CGTCGACG	1 cut(s)	46
SinI	GGWCC	1 cut(s)	214
SmaI	CCCGGG	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	314
SmlI	CTYRAG	2 cut(s)	191, 373
SmoI	CTYRAG	2 cut(s)	191, 373
SpeI	ACTAGT	1 cut(s)	365
SrfI	GCCCGGGC	1 cut(s)	262
Sse9I	AATT	1 cut(s)	5
SsiI	CCGC	6 cut(s)	91, 115, 131, 204, 289, 431
SspMI	CTAG	2 cut(s)	360, 366
StyD4I	CCNGG	3 cut(s)	259, 260, 442
TaiI	ACGT	3 cut(s)	84, 420, 495
TaqI	TCGA	2 cut(s)	47, 411
TaqII	GACCGA	1 cut(s)	164
TasI	AATT	1 cut(s)	5
TatI	WGTACW	1 cut(s)	390
TauI	GCSGC	1 cut(s)	133
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	2 cut(s)	87, 336
Tru9I	TTAA	2 cut(s)	87, 336
TseFI	GTSAC	1 cut(s)	368
TseI	GCWGC	4 cut(s)	37, 151, 256, 270
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	2 cut(s)	304, 495
TspGWI	ACGGA	1 cut(s)	35
TspMI	CCCGGG	1 cut(s)	260
Tth111I	GACNNNGTC	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	214
XmaI	CCCGGG	1 cut(s)	260
XmiI	GTMKAC	1 cut(s)	47
XspI	CTAG	2 cut(s)	360, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.