Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008058

Physical Location & Seq

Genomic Coordinates Reverse (-)

51622046 .. 51623333

Gene Structure 1288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0411400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGAGGCTGCTGCGACGCCCATGAACATAGTAGAGGGTCATTCATGCAAGGCTATGGAGTTAAAATGGGTAAGTTCCCGAGGCAAAGCCCAACTGCAAAACATGAAAACACCTTCAAAATTTAAAGCACCAGCTACACTTCAAGCCTCAGTCCCTGTGTTCATATCCACAAACCCATCTCACGTAAAACCAGATGATCTCATTGACCTATACAGCGCCTGCAATCTCAACGGCCACCGATTCCCGGAGTACGTGGACGGCGGAGATGGCTGCCGTGTAGTTGAAGGTATTGATGTGAACAAGCTACGTGTGGCTCTCTCACACAGTGAAGTTGTGGTCTCAGTCTTCTGCAAAGCAAATGATGTAGTTAGCAAAACTTCATCATCATTTTCGCAAAAAAATCGACAGCAGCAGAAGATTAGCAGAGAGGGTTTAGGAGAATTGTTTGAGAGGGTGGTGATGCCGGTGACACCATTTAACAGTCAATTGGTGGGTTTTGGCCGAGCTGTTTCTGATCAAGGATTGACAGCCTCCATCTACGATGTTATGGTTATTCCTTCATTGCAGGGTATGGGAATTGGCAAGATGATAGTTAAAAGAATCATAAGAATACTCACAAGCAGAGACATTTATGACATAGCAGCCCTTTGCTCAGAGAGCGAGAGCTCGTTCTTCAAAGCATGTGGTTTTGGAGATGACATTCTGTGCTCCACAGCAATGATGTATACAAGGACTGCTAGTGGTTCAACTAATCTCGAAGAACAACGGATGGTAACACGCGCAGGTCGAAAGCTATTGTTAGTCCCACCATTTTTGAAGACCTTACCATACTCCAAGTCCAAGACCACCACACAATCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006888 GO:0008150 GO:0016192 GO:0017016 GO:0017112 GO:0017137 GO:0019899 GO:0030008 GO:0031267 GO:0032991 GO:0044424 GO:0044464 GO:0046907 GO:0048193 GO:0051020 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065007 GO:0065009 GO:0098772 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sybindin

Protein Analysis

287

Amino Acids

31.35

Weight (kDa)

9.13

Isoelectric Point (pI)

44.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	156 - 230	5.1e-08	Acetyltransferase (GNAT) family
Acetyltransf_7	PF13508	161 - 230	1e-05	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51160 AT1G51160 AT1G51160
fragaria_vesca	FvH4_7g30501 FvH4_7g30501
malus_domestica	MD01G1210500.v1.1 MD07G1280700.v1.1
prunus_persica	Prupe.2G302900_v2.0.a1
pyrus_communis	pycom01g22100 pycom07g25530
rosa_chinensis	RchiOBHm_Chr1g0378911
rosa_laevigata	RLG00000026409
rosa_multiflora	Rmu_sc0000556.1_g000033 Rmu_sc0000556.1_g000034
rosa_rugosa	Rorug01G0411100 Rorug01G0411200 Rorug01G0411300 Rorug01G0411400
rosa_samantha	Rh1AG433900 Rh1BG391500 Rh1CG404300 Rh1DG422700
rosa_wichuraiana	Rw0G000100 Rw1G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	773
AccI	GTMKAC	1 cut(s)	725
AccII	CGCG	1 cut(s)	780
AciI	CCGC	1 cut(s)	261
AcoI	YGGCCR	2 cut(s)	232, 499
AcsI	RAATTY	1 cut(s)	119
AcyI	GRCGYC	1 cut(s)	17
AdeI	CACNNNGTG	1 cut(s)	326
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	1 cut(s)	244
AflIII	ACRYGT	1 cut(s)	307
AgsI	TTSAA	6 cut(s)	117, 143, 284, 676, 747, 817
AluBI	AGCT	5 cut(s)	134, 304, 506, 666, 793
AluI	AGCT	5 cut(s)	134, 304, 506, 666, 793
Alw21I	GWGCWC	2 cut(s)	668, 710
Alw26I	GTCTC	2 cut(s)	343, 618
AlwNI	CAGNNNCTG	2 cut(s)	155, 219
Ama87I	CYCGRG	1 cut(s)	78
AoxI	GGCC	2 cut(s)	232, 499
ApeKI	GCWGC	5 cut(s)	8, 11, 270, 409, 641
ApoI	RAATTY	1 cut(s)	119
AspLEI	GCGC	2 cut(s)	218, 782
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	2 cut(s)	469, 478
AvaI	CYCGRG	1 cut(s)	78
BanII	GRGCYC	1 cut(s)	668
BbsI	GAAGAC	2 cut(s)	337, 824
Bbv12I	GWGCWC	2 cut(s)	668, 710
BbvI	GCAGC	3 cut(s)	257, 421, 653
BccI	CCATC	4 cut(s)	184, 260, 542, 763
BceAI	ACGGC	3 cut(s)	247, 258, 274
BcgI	CGANNNNNNTGC	2 cut(s)	383, 417
BclI	TGATCA	1 cut(s)	514
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	2 cut(s)	343, 618
BfaI	CTAG	1 cut(s)	738
BfoI	RGCGCY	1 cut(s)	219
BfuAI	ACCTGC	1 cut(s)	773
BisI	GCNGC	5 cut(s)	9, 12, 271, 410, 642
BlsI	GCNGC	5 cut(s)	10, 13, 272, 411, 643
Bme1390I	CCNGG	1 cut(s)	245
BmeT110I	CYCGRG	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	245
BmsI	GCATC	1 cut(s)	450
BpiI	GAAGAC	2 cut(s)	337, 824
BpuMI	CCSGG	1 cut(s)	245
BsaAI	YACGTR	3 cut(s)	184, 253, 308
BsaHI	GRCGYC	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	343
BsaJI	CCNNGG	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse118I	RCCGGY	1 cut(s)	463
Bse3DI	GCAATG	2 cut(s)	560, 723
BseDI	CCNNGG	1 cut(s)	79
BseGI	GGATG	1 cut(s)	774
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMI	GCAATG	2 cut(s)	560, 723
BseMII	CTCAG	3 cut(s)	162, 354, 666
BseXI	GCAGC	3 cut(s)	257, 421, 653
Bsh1236I	CGCG	1 cut(s)	780
BshFI	GGCC	2 cut(s)	234, 501
BsiHKAI	GWGCWC	2 cut(s)	668, 710
BsiHKCI	CYCGRG	1 cut(s)	78
BsiSI	CCGG	2 cut(s)	245, 464
BslFI	GGGAC	2 cut(s)	137, 788
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmAI	GTCTC	2 cut(s)	343, 618
BsmFI	GGGAC	2 cut(s)	137, 788
BsnI	GGCC	2 cut(s)	234, 501
Bso31I	GGTCTC	1 cut(s)	343
BsoBI	CYCGRG	1 cut(s)	78
Bsp1286I	GDGCHC	2 cut(s)	668, 710
Bsp143I	GATC	2 cut(s)	196, 514
BspACI	CCGC	1 cut(s)	261
BspANI	GGCC	2 cut(s)	234, 501
BspCNI	CTCAG	3 cut(s)	161, 353, 665
BspFNI	CGCG	1 cut(s)	780
BspMI	ACCTGC	1 cut(s)	773
BspTNI	GGTCTC	1 cut(s)	343
BsrDI	GCAATG	2 cut(s)	560, 723
BsrFI	RCCGGY	1 cut(s)	463
BssAI	RCCGGY	1 cut(s)	463
BssECI	CCNNGG	1 cut(s)	79
BssMI	GATC	2 cut(s)	196, 514
BssNAI	GTATAC	1 cut(s)	726
BssNI	GRCGYC	1 cut(s)	17
Bst1107I	GTATAC	1 cut(s)	726
Bst4CI	ACNGT	2 cut(s)	326, 482
BstACI	GRCGYC	1 cut(s)	17
BstBAI	YACGTR	3 cut(s)	184, 253, 308
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	3 cut(s)	148, 340, 652
BstF5I	GGATG	1 cut(s)	774
BstFNI	CGCG	1 cut(s)	780
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	2 cut(s)	218, 782
BstKTI	GATC	2 cut(s)	199, 517
BstMAI	GTCTC	2 cut(s)	343, 618
BstMBI	GATC	2 cut(s)	196, 514
BstMWI	GCNNNNNNNGC	2 cut(s)	267, 657
BstNSI	RCATGY	1 cut(s)	684
BstSCI	CCNGG	1 cut(s)	243
BstUI	CGCG	1 cut(s)	780
BstV1I	GCAGC	3 cut(s)	257, 421, 653
BstV2I	GAAGAC	2 cut(s)	337, 824
BstZ17I	GTATAC	1 cut(s)	726
BsuRI	GGCC	2 cut(s)	234, 501
BtsCI	GGATG	1 cut(s)	774
BtsIMutI	CAGTG	1 cut(s)	331
BveI	ACCTGC	1 cut(s)	773
Cac8I	GCNNGC	1 cut(s)	220
CaiI	CAGNNNCTG	2 cut(s)	155, 219
CfoI	GCGC	2 cut(s)	218, 782
Cfr10I	RCCGGY	1 cut(s)	463
CseI	GACGC	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	250
CspCI	CAANNNNNGTGG	4 cut(s)	664, 699, 795, 830
CviAII	CATG	4 cut(s)	22, 45, 103, 681
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	3 cut(s)	148, 340, 652
DpnI	GATC	2 cut(s)	198, 516
DpnII	GATC	2 cut(s)	196, 514
DraI	TTTAAA	1 cut(s)	124
DraIII	CACNNNGTG	1 cut(s)	326
EaeI	YGGCCR	2 cut(s)	232, 499
EciI	GGCGGA	1 cut(s)	276
Ecl136II	GAGCTC	1 cut(s)	666
Eco24I	GRGCYC	1 cut(s)	668
Eco31I	GGTCTC	1 cut(s)	343
Eco53kI	GAGCTC	1 cut(s)	666
Eco88I	CYCGRG	1 cut(s)	78
EcoICRI	GAGCTC	1 cut(s)	666
EcoT38I	GRGCYC	1 cut(s)	668
FaeI	CATG	4 cut(s)	25, 48, 106, 684
FaqI	GGGAC	2 cut(s)	137, 788
FatI	CATG	4 cut(s)	21, 44, 102, 680
FbaI	TGATCA	1 cut(s)	514
FblI	GTMKAC	1 cut(s)	725
Fnu4HI	GCNGC	5 cut(s)	9, 12, 271, 410, 642
FokI	GGATG	1 cut(s)	781
FriOI	GRGCYC	1 cut(s)	668
Fsp4HI	GCNGC	5 cut(s)	9, 12, 271, 410, 642
FspBI	CTAG	1 cut(s)	738
GlaI	GCGC	2 cut(s)	217, 781
GluI	GCNGC	5 cut(s)	9, 12, 271, 410, 642
HaeII	RGCGCY	1 cut(s)	219
HaeIII	GGCC	2 cut(s)	234, 501
HapII	CCGG	2 cut(s)	245, 464
HgaI	GACGC	1 cut(s)	25
HhaI	GCGC	2 cut(s)	218, 782
Hin1I	GRCGYC	1 cut(s)	17
Hin1II	CATG	4 cut(s)	25, 48, 106, 684
Hin6I	GCGC	2 cut(s)	216, 780
HinP1I	GCGC	2 cut(s)	216, 780
HinfI	GANTC	2 cut(s)	240, 600
HpaII	CCGG	2 cut(s)	245, 464
HphI	GGTGA	2 cut(s)	469, 478
Hpy166II	GTNNAC	3 cut(s)	256, 298, 726
Hpy188I	TCNGA	2 cut(s)	514, 655
Hpy188III	TCNNGA	2 cut(s)	78, 755
Hpy8I	GTNNAC	3 cut(s)	256, 298, 726
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	3 cut(s)	123, 278, 567
HpyCH4III	ACNGT	2 cut(s)	326, 482
HpyCH4IV	ACGT	3 cut(s)	183, 252, 307
HpyCH4V	TGCA	5 cut(s)	48, 97, 222, 351, 565
HpyF10VI	GCNNNNNNNGC	2 cut(s)	267, 657
HpyF3I	CTNAG	3 cut(s)	148, 340, 652
HpySE526I	ACGT	3 cut(s)	183, 252, 307
Hsp92I	GRCGYC	1 cut(s)	17
Hsp92II	CATG	4 cut(s)	25, 48, 106, 684
HspAI	GCGC	2 cut(s)	216, 780
Ksp22I	TGATCA	1 cut(s)	514
Kzo9I	GATC	2 cut(s)	196, 514
LmnI	GCTCC	1 cut(s)	713
LpnPI	CCDG	8 cut(s)	144, 168, 204, 232, 258, 477, 551, 768
Lsp1109I	GCAGC	3 cut(s)	257, 421, 653
LweI	GCATC	1 cut(s)	450
MaeI	CTAG	1 cut(s)	738
MaeII	ACGT	3 cut(s)	183, 252, 307
MaeIII	GTNAC	2 cut(s)	466, 772
MalI	GATC	2 cut(s)	198, 516
MboI	GATC	2 cut(s)	196, 514
MboII	GAAGA	5 cut(s)	337, 427, 664, 770, 829
MfeI	CAATTG	1 cut(s)	485
MhlI	GDGCHC	2 cut(s)	668, 710
MluCI	AATT	4 cut(s)	119, 440, 485, 576
MnlI	CCTC	6 cut(s)	28, 74, 157, 421, 444, 541
MseI	TTAA	5 cut(s)	62, 123, 477, 594, 862
MslI	CAYNNNNRTG	1 cut(s)	716
MspI	CCGG	2 cut(s)	245, 464
MspR9I	CCNGG	1 cut(s)	245
MunI	CAATTG	1 cut(s)	485
MvnI	CGCG	1 cut(s)	780
MwoI	GCNNNNNNNGC	2 cut(s)	267, 657
NciI	CCSGG	1 cut(s)	245
NdeII	GATC	2 cut(s)	196, 514
NlaIII	CATG	4 cut(s)	25, 48, 106, 684
NmeAIII	GCCGAG	1 cut(s)	527
NmuCI	GTSAC	1 cut(s)	466
NspI	RCATGY	1 cut(s)	684
PcsI	WCGNNNNNNNCGW	1 cut(s)	784
PfeI	GAWTC	2 cut(s)	240, 600
PfoI	TCCNGGA	1 cut(s)	243
PkrI	GCNGC	5 cut(s)	10, 13, 272, 411, 643
Ppu21I	YACGTR	3 cut(s)	184, 253, 308
Psp124BI	GAGCTC	1 cut(s)	668
PstNI	CAGNNNCTG	2 cut(s)	155, 219
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
RseI	CAYNNNNRTG	1 cut(s)	716
SacI	GAGCTC	1 cut(s)	668
SaqAI	TTAA	5 cut(s)	62, 123, 477, 594, 862
SatI	GCNGC	5 cut(s)	9, 12, 271, 410, 642
Sau3AI	GATC	2 cut(s)	196, 514
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	2 cut(s)	668, 710
SfaNI	GCATC	1 cut(s)	450
SmiMI	CAYNNNNRTG	1 cut(s)	716
Sse9I	AATT	4 cut(s)	119, 440, 485, 576
SsiI	CCGC	1 cut(s)	261
SspMI	CTAG	1 cut(s)	738
SstI	GAGCTC	1 cut(s)	668
StyD4I	CCNGG	1 cut(s)	243
TaaI	ACNGT	2 cut(s)	326, 482
TaiI	ACGT	3 cut(s)	186, 255, 310
TaqI	TCGA	3 cut(s)	403, 756, 787
TasI	AATT	4 cut(s)	119, 440, 485, 576
TfiI	GAWTC	2 cut(s)	240, 600
Tru1I	TTAA	5 cut(s)	62, 123, 477, 594, 862
Tru9I	TTAA	5 cut(s)	62, 123, 477, 594, 862
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	5 cut(s)	8, 11, 270, 409, 641
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	6 cut(s)	33, 38, 119, 151, 369, 549
TspGWI	ACGGA	1 cut(s)	781
TspRI	CASTG	1 cut(s)	331
XapI	RAATTY	1 cut(s)	119
XceI	RCATGY	1 cut(s)	684
XmiI	GTMKAC	1 cut(s)	725
XspI	CTAG	1 cut(s)	738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.