FvH4_7g30501

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0008058
Physical Location & Seq
Forward (+)
22194166 .. 22196047
1882 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g30501.t3

Sequence Viewer

Length: 510 bp
ATGCAATTCTTCGGCGGAACAGAGATAAGCCCGTCGCTACCGGCGGCGACGGCGTCGGGAAACAACGGCCACATGATGTACGTCTTTAACCGCAACGGCATCTGCCTCCTCTACCGTGAATGGAACCGTCCTCTCCACACTCTCAACGCTCAGCAAGATCACAAGCTCATGTTCGGCCTCCTCTTCTCCCTCAAGTCCCTCACCGCCAAGATGGACCCCACCGCTGTGGAGAAAGGGAACCTAGGAGTGCCTCAGTTGACCGGTCAAGGTTGCTCGTTTCATAGCTTTCGGACCAATACTTACAAGCTTAGCTTCATGGAGAGTCCCTCTGGTATCAAGATTATCTTGATCACTCATCCTCGGACTGGTGATTTACGGGAGTCTTTGAAGTACATTTACAACTTGTATGTTGAGTATGTTGTGAAGAACCCGCTCTACACTCCTGGAACTCCGATCAGGTGTGAGCTATTTAATACAACTCTTGACCAATATGTAAGGAGCATTTCCTAG

Protein Analysis

170

Amino Acids

19.1

Weight (kDa)

9.17

Isoelectric Point (pI)

26.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sybindin PF04099 24 - 118 5.3e-27 Sybindin-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 433
AciI CCGC 6 cut(s) 15, 44, 91, 204, 222, 431
AcoI YGGCCR 1 cut(s) 67
AcyI GRCGYC 1 cut(s) 53
AfaI GTAC 2 cut(s) 80, 392
AfiI CCNNNNNNNGG 1 cut(s) 365
AgeI ACCGGT 1 cut(s) 260
AgsI TTSAA 1 cut(s) 388
AjnI CCWGG 1 cut(s) 442
AleI CACNNNNGTG 1 cut(s) 224
AluBI AGCT 5 cut(s) 166, 285, 307, 312, 466
AluI AGCT 5 cut(s) 166, 285, 307, 312, 466
AoxI GGCC 2 cut(s) 67, 175
AsiGI ACCGGT 1 cut(s) 260
AspA2I CCTAGG 1 cut(s) 241
AspS9I GGNCC 2 cut(s) 214, 291
AsuHPI GGTGA 2 cut(s) 193, 380
AvaII GGWCC 2 cut(s) 214, 291
AvrII CCTAGG 1 cut(s) 241
BarI GAAGNNNNNNTAC 2 cut(s) 380, 412
BccI CCATC 1 cut(s) 205
BceAI ACGGC 3 cut(s) 66, 82, 112
BciT130I CCWGG 1 cut(s) 444
BclI TGATCA 1 cut(s) 348
BfaI CTAG 2 cut(s) 242, 508
BisI GCNGC 1 cut(s) 45
BlnI CCTAGG 1 cut(s) 241
BlpI GCTNAGC 2 cut(s) 150, 308
BlsI GCNGC 1 cut(s) 46
Bme1390I CCNGG 1 cut(s) 444
Bme18I GGWCC 2 cut(s) 214, 291
BmgT120I GGNCC 2 cut(s) 214, 291
BmiI GGNNCC 3 cut(s) 125, 216, 239
BmrFI CCNGG 1 cut(s) 444
BmsI GCATC 1 cut(s) 108
BplI GAGNNNNNCTC 2 cut(s) 311, 343
Bpu1102I GCTNAGC 2 cut(s) 150, 308
BpuEI CTTGAG 1 cut(s) 176
BsaHI GRCGYC 1 cut(s) 53
BsaJI CCNNGG 2 cut(s) 241, 359
BsaWI WCCGGW 1 cut(s) 260
Bsc4I CCNNNNNNNGG 1 cut(s) 365
Bse118I RCCGGY 2 cut(s) 40, 260
Bse1I ACTGG 1 cut(s) 370
BseBI CCWGG 1 cut(s) 444
BseDI CCNNGG 2 cut(s) 241, 359
BseGI GGATG 1 cut(s) 355
BseLI CCNNNNNNNGG 1 cut(s) 365
BseMII CTCAG 2 cut(s) 164, 266
BseNI ACTGG 1 cut(s) 370
BseRI GAGGAG 2 cut(s) 98, 170
BshFI GGCC 2 cut(s) 69, 177
BshTI ACCGGT 1 cut(s) 260
BsiSI CCGG 2 cut(s) 41, 261
BslFI GGGAC 2 cut(s) 181, 309
BslI CCNNNNNNNGG 1 cut(s) 365
BsmFI GGGAC 2 cut(s) 181, 309
BsnI GGCC 2 cut(s) 69, 177
Bsp143I GATC 3 cut(s) 157, 348, 453
Bsp1720I GCTNAGC 2 cut(s) 150, 308
BspACI CCGC 6 cut(s) 15, 44, 91, 204, 222, 431
BspANI GGCC 2 cut(s) 69, 177
BspCNI CTCAG 2 cut(s) 163, 265
BspLI GGNNCC 3 cut(s) 125, 216, 239
BsrBI CCGCTC 1 cut(s) 433
BsrFI RCCGGY 2 cut(s) 40, 260
BsrI ACTGG 1 cut(s) 370
BssAI RCCGGY 2 cut(s) 40, 260
BssECI CCNNGG 2 cut(s) 241, 359
BssMI GATC 3 cut(s) 157, 348, 453
BssNI GRCGYC 1 cut(s) 53
BssT1I CCWWGG 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 444
Bst4CI ACNGT 2 cut(s) 116, 128
Bst6I CTCTTC 1 cut(s) 188
BstACI GRCGYC 1 cut(s) 53
BstDEI CTNAG 3 cut(s) 150, 252, 308
BstF5I GGATG 1 cut(s) 355
BstKTI GATC 3 cut(s) 160, 351, 456
BstMBI GATC 3 cut(s) 157, 348, 453
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNI CCWGG 1 cut(s) 444
BstSCI CCNGG 1 cut(s) 442
BstXI CCANNNNNNTGG 1 cut(s) 226
BsuRI GGCC 2 cut(s) 69, 177
BtsCI GGATG 1 cut(s) 355
Cfr10I RCCGGY 2 cut(s) 40, 260
Cfr13I GGNCC 2 cut(s) 214, 291
CseI GACGC 1 cut(s) 42
Csp6I GTAC 2 cut(s) 79, 391
CspAI ACCGGT 1 cut(s) 260
CviAII CATG 3 cut(s) 73, 169, 316
CviJI RGCY 8 cut(s) 30, 69, 166, 177, 285, 307, 312, 466
CviKI_1 RGCY 8 cut(s) 30, 69, 166, 177, 285, 307, 312, 466
CviQI GTAC 2 cut(s) 79, 391
DdeI CTNAG 3 cut(s) 150, 252, 308
DpnI GATC 3 cut(s) 159, 350, 455
DpnII GATC 3 cut(s) 157, 348, 453
EaeI YGGCCR 1 cut(s) 67
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
EciI GGCGGA 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 241
Eco47I GGWCC 2 cut(s) 214, 291
EcoRII CCWGG 1 cut(s) 442
EcoT14I CCWWGG 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 3 cut(s) 76, 172, 319
FaiI YATR 7 cut(s) 74, 170, 282, 317, 408, 417, 492
FalI AAGNNNNNCTT 4 cut(s) 296, 328, 329, 361
FaqI GGGAC 2 cut(s) 181, 309
FatI CATG 3 cut(s) 72, 168, 315
FauI CCCGC 1 cut(s) 438
FbaI TGATCA 1 cut(s) 348
Fnu4HI GCNGC 1 cut(s) 45
FokI GGATG 1 cut(s) 342
Fsp4HI GCNGC 1 cut(s) 45
FspBI CTAG 2 cut(s) 242, 508
GluI GCNGC 1 cut(s) 45
HaeIII GGCC 2 cut(s) 69, 177
HapII CCGG 2 cut(s) 41, 261
HgaI GACGC 1 cut(s) 42
Hin1I GRCGYC 1 cut(s) 53
Hin1II CATG 3 cut(s) 76, 172, 319
HincII GTYRAC 1 cut(s) 258
HindII GTYRAC 1 cut(s) 258
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 2 cut(s) 322, 380
HpaII CCGG 2 cut(s) 41, 261
HphI GGTGA 2 cut(s) 193, 380
Hpy166II GTNNAC 1 cut(s) 258
Hpy188I TCNGA 3 cut(s) 291, 363, 453
Hpy188III TCNNGA 4 cut(s) 57, 337, 346, 482
Hpy8I GTNNAC 1 cut(s) 258
Hpy99I CGWCG 3 cut(s) 37, 52, 58
HpyCH4III ACNGT 2 cut(s) 116, 128
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 3 cut(s) 150, 252, 308
HpySE526I ACGT 1 cut(s) 81
Hsp92I GRCGYC 1 cut(s) 53
Hsp92II CATG 3 cut(s) 76, 172, 319
Ksp22I TGATCA 1 cut(s) 348
Kzo9I GATC 3 cut(s) 157, 348, 453
LmnI GCTCC 1 cut(s) 498
LpnPI CCDG 7 cut(s) 54, 274, 315, 351, 429, 442, 456
LweI GCATC 1 cut(s) 108
MaeI CTAG 2 cut(s) 242, 508
MaeII ACGT 1 cut(s) 81
MalI GATC 3 cut(s) 159, 350, 455
MbiI CCGCTC 1 cut(s) 433
MboI GATC 3 cut(s) 157, 348, 453
MboII GAAGA 2 cut(s) 175, 436
MluCI AATT 1 cut(s) 5
MlyI GAGTC 2 cut(s) 331, 389
MseI TTAA 2 cut(s) 87, 471
MslI CAYNNNNRTG 1 cut(s) 224
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 2 cut(s) 41, 261
MspR9I CCNGG 1 cut(s) 444
MvaI CCWGG 1 cut(s) 444
MwoI GCNNNNNNNGC 1 cut(s) 50
NdeII GATC 3 cut(s) 157, 348, 453
NlaIII CATG 3 cut(s) 76, 172, 319
NlaIV GGNNCC 3 cut(s) 125, 216, 239
OliI CACNNNNGTG 1 cut(s) 224
PflFI GACNNNGTC 1 cut(s) 52
PfoI TCCNGGA 1 cut(s) 442
PinAI ACCGGT 1 cut(s) 260
PkrI GCNGC 1 cut(s) 46
PleI GAGTC 2 cut(s) 330, 388
PpsI GAGTC 2 cut(s) 330, 388
Psp6I CCWGG 1 cut(s) 442
PspGI CCWGG 1 cut(s) 442
PspN4I GGNNCC 3 cut(s) 125, 216, 239
PspPI GGNCC 2 cut(s) 214, 291
PsrI GAACNNNNNNTAC 2 cut(s) 419, 451
PsyI GACNNNGTC 1 cut(s) 52
RsaI GTAC 2 cut(s) 80, 392
RsaNI GTAC 2 cut(s) 79, 391
RseI CAYNNNNRTG 1 cut(s) 224
SaqAI TTAA 2 cut(s) 87, 471
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 3 cut(s) 157, 348, 453
Sau96I GGNCC 2 cut(s) 214, 291
SchI GAGTC 2 cut(s) 331, 389
ScrFI CCNGG 1 cut(s) 444
SetI ASST 9 cut(s) 84, 168, 243, 271, 287, 309, 314, 461, 468
SfaNI GCATC 1 cut(s) 108
SinI GGWCC 2 cut(s) 214, 291
SmiMI CAYNNNNRTG 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 1 cut(s) 5
SsiI CCGC 6 cut(s) 15, 44, 91, 204, 222, 431
SspMI CTAG 2 cut(s) 242, 508
StyD4I CCNGG 1 cut(s) 442
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 2 cut(s) 116, 128
TaiI ACGT 1 cut(s) 84
TasI AATT 1 cut(s) 5
TatI WGTACW 1 cut(s) 390
TauI GCSGC 1 cut(s) 47
Tru1I TTAA 2 cut(s) 87, 471
Tru9I TTAA 2 cut(s) 87, 471
TspDTI ATGAA 2 cut(s) 269, 304
Tth111I GACNNNGTC 1 cut(s) 52
VpaK11BI GGWCC 2 cut(s) 214, 291
XmaJI CCTAGG 1 cut(s) 241
XspI CTAG 2 cut(s) 242, 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.