Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008058

Physical Location & Seq

Genomic Coordinates Forward (+)

28993941 .. 28996312

Gene Structure 2372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G302900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCAATTCTTCGGGGGAACGGAGATCAGCCCGTCTCTGCCGGCGTCAACGGCGTCGGGGAACAACGGCCACATGATGTACGTGTTCAACAGAAACGGCGTCTGCTTGCTCTACCGTGAATGGAACCGGCCTCTTCACACCCTGAACCAACAGCAAGACCACAAGCTCATGTTCGGCCTCCTATTCTCCCTCAAGTCCCTCACCGCCAAGATGGACCCCACCACTCCGGATAAGGCCAATCTCGGCGTCCCTCAGCTGCCAGGCCAAGGCTGTTCCTTTCACAGCTTCCGCACCAATACCTACAAGCTTACTTTCATGGAATCCCCTTCTGGCATTAAGATTATCTTGGTTACTCATCCCAGGACCGGAGACTTGCGTGAATCTTTGAAGTACATTTACAACTTGTATGTGGAATATGTCGTGAAGAACCCGCTCTACACTCCTGGAACTCCAATCAGGTGTGAGCTATTCAATACAGCTCTCGACCAATATGTAAGGAGCATTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006888 GO:0008150 GO:0016192 GO:0017016 GO:0017112 GO:0017137 GO:0019899 GO:0030008 GO:0031267 GO:0032991 GO:0044424 GO:0044464 GO:0046907 GO:0048193 GO:0051020 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065007 GO:0065009 GO:0098772 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sybindin

Protein Analysis

170

Amino Acids

19.16

Weight (kDa)

9.17

Isoelectric Point (pI)

29.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51160 AT1G51160 AT1G51160
fragaria_vesca	FvH4_7g30501 FvH4_7g30501
malus_domestica	MD01G1210500.v1.1 MD07G1280700.v1.1
prunus_persica	Prupe.2G302900_v2.0.a1
pyrus_communis	pycom01g22100 pycom07g25530
rosa_chinensis	RchiOBHm_Chr1g0378911
rosa_laevigata	RLG00000026409
rosa_multiflora	Rmu_sc0000556.1_g000033 Rmu_sc0000556.1_g000034
rosa_rugosa	Rorug01G0411100 Rorug01G0411200 Rorug01G0411300 Rorug01G0411400
rosa_samantha	Rh1AG433900 Rh1BG391500 Rh1CG404300 Rh1DG422700
rosa_wichuraiana	Rw0G000100 Rw1G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	433
AccIII	TCCGGA	1 cut(s)	226
AciI	CCGC	3 cut(s)	204, 289, 431
AcoI	YGGCCR	1 cut(s)	67
AcyI	GRCGYC	4 cut(s)	44, 53, 99, 246
AfaI	GTAC	2 cut(s)	80, 392
AfiI	CCNNNNNNNGG	2 cut(s)	266, 365
AflIII	ACRYGT	1 cut(s)	81
AgsI	TTSAA	3 cut(s)	88, 388, 472
AjnI	CCWGG	3 cut(s)	259, 359, 442
AluBI	AGCT	6 cut(s)	166, 256, 285, 307, 466, 479
AluI	AGCT	6 cut(s)	166, 256, 285, 307, 466, 479
Alw26I	GTCTC	2 cut(s)	39, 363
Aor13HI	TCCGGA	1 cut(s)	226
AoxI	GGCC	5 cut(s)	67, 128, 175, 234, 262
ApeKI	GCWGC	1 cut(s)	256
AspS9I	GGNCC	2 cut(s)	214, 363
AsuHPI	GGTGA	1 cut(s)	193
AvaII	GGWCC	2 cut(s)	214, 363
BarI	GAAGNNNNNNTAC	2 cut(s)	380, 412
BbvCI	CCTCAGC	1 cut(s)	252
BbvI	GCAGC	1 cut(s)	243
BccI	CCATC	1 cut(s)	205
BceAI	ACGGC	3 cut(s)	66, 82, 112
BciT130I	CCWGG	3 cut(s)	261, 361, 444
BcoDI	GTCTC	2 cut(s)	39, 363
BisI	GCNGC	1 cut(s)	257
BlsI	GCNGC	1 cut(s)	258
Bme1390I	CCNGG	3 cut(s)	261, 361, 444
Bme18I	GGWCC	2 cut(s)	214, 363
BmgT120I	GGNCC	2 cut(s)	214, 363
BmiI	GGNNCC	2 cut(s)	125, 216
BmrFI	CCNGG	3 cut(s)	261, 361, 444
Bpu10I	CCTNAGC	1 cut(s)	252
BpuEI	CTTGAG	1 cut(s)	176
BsaAI	YACGTR	1 cut(s)	82
BsaHI	GRCGYC	4 cut(s)	44, 53, 99, 246
BsaJI	CCNNGG	2 cut(s)	265, 359
BsaWI	WCCGGW	2 cut(s)	226, 365
Bsc4I	CCNNNNNNNGG	2 cut(s)	266, 365
Bse118I	RCCGGY	2 cut(s)	40, 126
BseAI	TCCGGA	1 cut(s)	226
BseBI	CCWGG	3 cut(s)	261, 361, 444
BseDI	CCNNGG	2 cut(s)	265, 359
BseGI	GGATG	1 cut(s)	355
BseLI	CCNNNNNNNGG	2 cut(s)	266, 365
BseMII	CTCAG	1 cut(s)	266
BseXI	GCAGC	1 cut(s)	243
BshFI	GGCC	5 cut(s)	69, 130, 177, 236, 264
BsiSI	CCGG	4 cut(s)	41, 127, 227, 366
BslFI	GGGAC	2 cut(s)	181, 233
BslI	CCNNNNNNNGG	2 cut(s)	266, 365
BsmAI	GTCTC	2 cut(s)	39, 363
BsmBI	CGTCTC	1 cut(s)	39
BsmFI	GGGAC	2 cut(s)	181, 233
BsnI	GGCC	5 cut(s)	69, 130, 177, 236, 264
Bsp13I	TCCGGA	1 cut(s)	226
Bsp143I	GATC	1 cut(s)	24
BspACI	CCGC	3 cut(s)	204, 289, 431
BspANI	GGCC	5 cut(s)	69, 130, 177, 236, 264
BspCNI	CTCAG	1 cut(s)	265
BspEI	TCCGGA	1 cut(s)	226
BspLI	GGNNCC	2 cut(s)	125, 216
BsrBI	CCGCTC	1 cut(s)	433
BsrFI	RCCGGY	2 cut(s)	40, 126
BssAI	RCCGGY	2 cut(s)	40, 126
BssECI	CCNNGG	2 cut(s)	265, 359
BssMI	GATC	1 cut(s)	24
BssNI	GRCGYC	4 cut(s)	44, 53, 99, 246
BssT1I	CCWWGG	1 cut(s)	265
Bst2UI	CCWGG	3 cut(s)	261, 361, 444
Bst4CI	ACNGT	1 cut(s)	116
Bst6I	CTCTTC	1 cut(s)	138
BstACI	GRCGYC	4 cut(s)	44, 53, 99, 246
BstBAI	YACGTR	1 cut(s)	82
BstC8I	GCNNGC	2 cut(s)	42, 107
BstDEI	CTNAG	1 cut(s)	252
BstF5I	GGATG	1 cut(s)	355
BstKTI	GATC	1 cut(s)	27
BstMAI	GTCTC	2 cut(s)	39, 363
BstMBI	GATC	1 cut(s)	24
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	3 cut(s)	261, 361, 444
BstSCI	CCNGG	3 cut(s)	259, 359, 442
BstV1I	GCAGC	1 cut(s)	243
BsuRI	GGCC	5 cut(s)	69, 130, 177, 236, 264
BtsCI	GGATG	1 cut(s)	355
Cac8I	GCNNGC	2 cut(s)	42, 107
Cfr10I	RCCGGY	2 cut(s)	40, 126
Cfr13I	GGNCC	2 cut(s)	214, 363
CseI	GACGC	4 cut(s)	33, 42, 88, 235
Csp6I	GTAC	2 cut(s)	79, 391
CviAII	CATG	3 cut(s)	73, 169, 316
CviQI	GTAC	2 cut(s)	79, 391
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
EaeI	YGGCCR	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	265
Eco47I	GGWCC	2 cut(s)	214, 363
EcoRII	CCWGG	3 cut(s)	259, 359, 442
EcoT14I	CCWWGG	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	265
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	3 cut(s)	76, 172, 319
FaiI	YATR	6 cut(s)	74, 170, 317, 408, 417, 492
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FaqI	GGGAC	2 cut(s)	181, 233
FatI	CATG	3 cut(s)	72, 168, 315
FauI	CCCGC	1 cut(s)	438
Fnu4HI	GCNGC	1 cut(s)	257
FokI	GGATG	1 cut(s)	342
Fsp4HI	GCNGC	1 cut(s)	257
GluI	GCNGC	1 cut(s)	257
HaeIII	GGCC	5 cut(s)	69, 130, 177, 236, 264
HapII	CCGG	4 cut(s)	41, 127, 227, 366
HgaI	GACGC	4 cut(s)	33, 42, 88, 235
Hin1I	GRCGYC	4 cut(s)	44, 53, 99, 246
Hin1II	CATG	3 cut(s)	76, 172, 319
HincII	GTYRAC	1 cut(s)	48
HindII	GTYRAC	1 cut(s)	48
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	2 cut(s)	320, 380
HpaII	CCGG	4 cut(s)	41, 127, 227, 366
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188III	TCNNGA	3 cut(s)	227, 421, 482
Hpy8I	GTNNAC	1 cut(s)	48
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	1 cut(s)	336
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	1 cut(s)	81
Hsp92I	GRCGYC	4 cut(s)	44, 53, 99, 246
Hsp92II	CATG	3 cut(s)	76, 172, 319
Kpn2I	TCCGGA	1 cut(s)	226
KroI	GCCGGC	1 cut(s)	40
KroNI	GCCGGC	1 cut(s)	42
Kzo9I	GATC	1 cut(s)	24
LmnI	GCTCC	1 cut(s)	498
Lsp1109I	GCAGC	1 cut(s)	243
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	1 cut(s)	26
MbiI	CCGCTC	1 cut(s)	433
MboI	GATC	1 cut(s)	24
MboII	GAAGA	2 cut(s)	125, 436
MluCI	AATT	1 cut(s)	5
MnlI	CCTC	5 cut(s)	141, 188, 200, 209, 261
MroI	TCCGGA	1 cut(s)	226
MroNI	GCCGGC	1 cut(s)	40
MseI	TTAA	1 cut(s)	336
MspA1I	CMGCKG	1 cut(s)	256
MspI	CCGG	4 cut(s)	41, 127, 227, 366
MspR9I	CCNGG	3 cut(s)	261, 361, 444
MvaI	CCWGG	3 cut(s)	261, 361, 444
MwoI	GCNNNNNNNGC	1 cut(s)	50
NaeI	GCCGGC	1 cut(s)	42
NdeII	GATC	1 cut(s)	24
NgoMIV	GCCGGC	1 cut(s)	40
NlaIII	CATG	3 cut(s)	76, 172, 319
NlaIV	GGNNCC	2 cut(s)	125, 216
NmeAIII	GCCGAG	1 cut(s)	222
PdiI	GCCGGC	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	320, 380
PfoI	TCCNGGA	1 cut(s)	442
PkrI	GCNGC	1 cut(s)	258
Ppu21I	YACGTR	1 cut(s)	82
Psp6I	CCWGG	3 cut(s)	259, 359, 442
PspGI	CCWGG	3 cut(s)	259, 359, 442
PspN4I	GGNNCC	2 cut(s)	125, 216
PspPI	GGNCC	2 cut(s)	214, 363
PsrI	GAACNNNNNNTAC	2 cut(s)	419, 451
PvuII	CAGCTG	1 cut(s)	256
RsaI	GTAC	2 cut(s)	80, 392
RsaNI	GTAC	2 cut(s)	79, 391
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	1 cut(s)	257
Sau3AI	GATC	1 cut(s)	24
Sau96I	GGNCC	2 cut(s)	214, 363
ScrFI	CCNGG	3 cut(s)	261, 361, 444
SetI	ASST	9 cut(s)	84, 168, 258, 287, 302, 309, 461, 468, 481
SinI	GGWCC	2 cut(s)	214, 363
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	1 cut(s)	5
SsiI	CCGC	3 cut(s)	204, 289, 431
StyD4I	CCNGG	3 cut(s)	259, 359, 442
StyI	CCWWGG	1 cut(s)	265
TaaI	ACNGT	1 cut(s)	116
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	1 cut(s)	483
TasI	AATT	1 cut(s)	5
TatI	WGTACW	1 cut(s)	390
TfiI	GAWTC	2 cut(s)	320, 380
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TseI	GCWGC	1 cut(s)	256
TspDTI	ATGAA	1 cut(s)	304
TspGWI	ACGGA	1 cut(s)	35
VpaK11BI	GGWCC	2 cut(s)	214, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.