Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008058

Physical Location & Seq

Genomic Coordinates Reverse (-)

51620365 .. 51621554

Gene Structure 1190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0411300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGGGAAACTCTGGGTTGAAGTTTGCTTGATATCTGCTCGAGGGCTCCGGCGTTCATCGTCCCTATGGAAGCTTCAATGGTATGCTGTGGGGTGGACCAATCCCAACAACAAGTACTGCACCAAGATTGATGCATCTGGAAATGCAAATCCAGTATGGAAAACCAAGTTTGCTACCTTGGTTGAGGACGCGGAATCTAAACTGAATGATTTGGCTCTGCACATTGAAGTCTATAGTAGAGAGCCTATATTCCTCAGAGAAAGGCTACAGGGGACAGCTACTATTCTCTTGAAAGAGTTTCTGGCTAAGCATAACAAGAATTCTGAGAATTCAAGGCATGGAGTTGAAGAAGTTGGGAGCTACCAATTGCGAAAAAAGAATTCCAACAAACCTCAAGGTTTTGTTGATGTTTCAATCCACATTTCTGAGGATATGGAAGGGAGAAGCTCATACACAGGAAATGAGGGAGGACCTGGGGATCACAGCAATACTATCACCTTGGCTACCGGAGATGGGTCTGCACCAGCATTACTACCTTTTACTCCACAAAAGAGACCAGAACATCAATTCCAAATGAATTCCCCGTATGCAAATCCAATGCCTTCGACTACAAACTATTTGAAACCATCTGCAGTTGGACCAAGTTACACACCAGCAAGCGGACCAAGCTACACGCCAGCAAACGGACCAGGCTACCTGCCAGCAAGCGGACCAGGCTACCTGCCAGCGAGTGGACCAAGCTATCAGCCTTCTAGAACTCCTCCACCGCCTCCACCACCTTCCAATGTTGGGTATGTACCTACTTTTCTCCCCAGGACAGATCAAATGACTGACACCTATATCAATATGCCCTCATCATCTGGAGCACCACCTCCTGGTCGTGGAACTAGGGCCGGAGGACCTGCTTTTGCAATGGGGATGGGTGCTGGAGCGCTGGCAGCCGGTGCCGTGATCTTCGGTGATGACTTTATGTCAGGATTTGATGTTCCTTCAGGCTTACAAGATGCTAGTGTTACCATATCAGCTGATCCTCCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006888 GO:0008150 GO:0016192 GO:0017016 GO:0017112 GO:0017137 GO:0019899 GO:0030008 GO:0031267 GO:0032991 GO:0044424 GO:0044464 GO:0046907 GO:0048193 GO:0051020 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065007 GO:0065009 GO:0098772 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sybindin

Protein Analysis

346

Amino Acids

36.95

Weight (kDa)

7.74

Isoelectric Point (pI)

57.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	6 - 106	2.2e-08	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51160 AT1G51160 AT1G51160
fragaria_vesca	FvH4_7g30501 FvH4_7g30501
malus_domestica	MD01G1210500.v1.1 MD07G1280700.v1.1
prunus_persica	Prupe.2G302900_v2.0.a1
pyrus_communis	pycom01g22100 pycom07g25530
rosa_chinensis	RchiOBHm_Chr1g0378911
rosa_laevigata	RLG00000026409
rosa_multiflora	Rmu_sc0000556.1_g000033 Rmu_sc0000556.1_g000034
rosa_rugosa	Rorug01G0411100 Rorug01G0411200 Rorug01G0411300 Rorug01G0411400
rosa_samantha	Rh1AG433900 Rh1BG391500 Rh1CG404300 Rh1DG422700
rosa_wichuraiana	Rw0G000100 Rw1G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	705, 729, 910
AccB1I	GGYRCC	1 cut(s)	944
AccB7I	CCANNNNNTGG	2 cut(s)	731, 875
AccII	CGCG	1 cut(s)	191
AciI	CCGC	4 cut(s)	191, 660, 708, 767
AclWI	GGATC	2 cut(s)	486, 1022
AcsI	RAATTY	4 cut(s)	319, 328, 379, 577
AcuI	CTGAAG	1 cut(s)	975
AfaI	GTAC	2 cut(s)	116, 798
AfeI	AGCGCT	1 cut(s)	933
AfiI	CCNNNNNNNGG	8 cut(s)	513, 659, 683, 707, 731, 789, 875, 881
AgsI	TTSAA	8 cut(s)	20, 77, 227, 292, 333, 347, 414, 622
AhdI	GACNNNNNGTC	1 cut(s)	970
AjnI	CCWGG	5 cut(s)	472, 688, 712, 812, 874
AloI	GAACNNNNNNTCC	4 cut(s)	552, 584, 969, 1001
AluBI	AGCT	7 cut(s)	73, 278, 360, 447, 669, 741, 1025
AluI	AGCT	7 cut(s)	73, 278, 360, 447, 669, 741, 1025
Alw21I	GWGCWC	1 cut(s)	868
Alw26I	GTCTC	1 cut(s)	547
AlwI	GGATC	2 cut(s)	486, 1022
Ama87I	CYCGRG	1 cut(s)	39
Aor51HI	AGCGCT	1 cut(s)	933
AoxI	GGCC	1 cut(s)	891
ApeKI	GCWGC	1 cut(s)	938
ApoI	RAATTY	4 cut(s)	319, 328, 379, 577
AspLEI	GCGC	1 cut(s)	934
AspS9I	GGNCC	9 cut(s)	96, 470, 638, 662, 686, 710, 734, 891, 899
AsuHPI	GGTGA	2 cut(s)	487, 971
AvaI	CYCGRG	1 cut(s)	39
AvaII	GGWCC	8 cut(s)	96, 470, 638, 662, 686, 710, 734, 899
BanI	GGYRCC	1 cut(s)	944
BanII	GRGCYC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	868
BbvI	GCAGC	1 cut(s)	950
BccI	CCATC	3 cut(s)	506, 634, 913
BceAI	ACGGC	1 cut(s)	932
BciT130I	CCWGG	5 cut(s)	474, 690, 714, 814, 876
BcoDI	GTCTC	1 cut(s)	547
BfaI	CTAG	3 cut(s)	753, 888, 1008
BfmI	CTRYAG	3 cut(s)	232, 266, 630
BfoI	RGCGCY	1 cut(s)	935
BfuAI	ACCTGC	3 cut(s)	705, 729, 910
BisI	GCNGC	1 cut(s)	939
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	1 cut(s)	940
BmcAI	AGTACT	1 cut(s)	116
Bme1390I	CCNGG	5 cut(s)	474, 690, 714, 814, 876
Bme18I	GGWCC	8 cut(s)	96, 470, 638, 662, 686, 710, 734, 899
BmeRI	GACNNNNNGTC	1 cut(s)	970
BmeT110I	CYCGRG	1 cut(s)	39
BmgT120I	GGNCC	9 cut(s)	96, 470, 638, 662, 686, 710, 734, 891, 899
BmiI	GGNNCC	2 cut(s)	47, 946
BmrFI	CCNGG	5 cut(s)	474, 690, 714, 814, 876
BmsI	GCATC	3 cut(s)	121, 143, 994
BpmI	CTGGAG	2 cut(s)	882, 948
Bpu1102I	GCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	378
BsaI	GGTCTC	1 cut(s)	547
BsaJI	CCNNGG	4 cut(s)	177, 473, 498, 812
BsaWI	WCCGGW	1 cut(s)	506
Bsc4I	CCNNNNNNNGG	8 cut(s)	513, 659, 683, 707, 731, 789, 875, 881
Bse118I	RCCGGY	1 cut(s)	941
Bse1I	ACTGG	1 cut(s)	152
Bse3DI	GCAATG	1 cut(s)	918
BseBI	CCWGG	5 cut(s)	474, 690, 714, 814, 876
BseDI	CCNNGG	4 cut(s)	177, 473, 498, 812
BseGI	GGATG	1 cut(s)	924
BseLI	CCNNNNNNNGG	8 cut(s)	513, 659, 683, 707, 731, 789, 875, 881
BseMI	GCAATG	1 cut(s)	918
BseMII	CTCAG	3 cut(s)	268, 315, 417
BseNI	ACTGG	1 cut(s)	152
BseRI	GAGGAG	1 cut(s)	750
BseXI	GCAGC	1 cut(s)	950
BsgI	GTGCAG	3 cut(s)	103, 203, 504
Bsh1236I	CGCG	1 cut(s)	191
BshFI	GGCC	1 cut(s)	893
BshNI	GGYRCC	1 cut(s)	944
BsiHKAI	GWGCWC	1 cut(s)	868
BsiHKCI	CYCGRG	1 cut(s)	39
BsiSI	CCGG	4 cut(s)	49, 507, 894, 942
BslFI	GGGAC	2 cut(s)	46, 286
BslI	CCNNNNNNNGG	8 cut(s)	513, 659, 683, 707, 731, 789, 875, 881
BsmAI	GTCTC	1 cut(s)	547
BsmFI	GGGAC	2 cut(s)	46, 286
BsnI	GGCC	1 cut(s)	893
Bso31I	GGTCTC	1 cut(s)	547
BsoBI	CYCGRG	1 cut(s)	39
Bsp1286I	GDGCHC	2 cut(s)	48, 868
Bsp143I	GATC	4 cut(s)	478, 820, 951, 1027
Bsp1720I	GCTNAGC	1 cut(s)	306
BspACI	CCGC	4 cut(s)	191, 660, 708, 767
BspANI	GGCC	1 cut(s)	893
BspCNI	CTCAG	3 cut(s)	267, 316, 418
BspFNI	CGCG	1 cut(s)	191
BspLI	GGNNCC	2 cut(s)	47, 946
BspMAI	CTGCAG	1 cut(s)	634
BspMI	ACCTGC	3 cut(s)	705, 729, 910
BspPI	GGATC	2 cut(s)	486, 1022
BspT107I	GGYRCC	1 cut(s)	944
BspTNI	GGTCTC	1 cut(s)	547
BsrDI	GCAATG	1 cut(s)	918
BsrFI	RCCGGY	1 cut(s)	941
BsrI	ACTGG	1 cut(s)	152
BssAI	RCCGGY	1 cut(s)	941
BssECI	CCNNGG	4 cut(s)	177, 473, 498, 812
BssMI	GATC	4 cut(s)	478, 820, 951, 1027
BssT1I	CCWWGG	2 cut(s)	177, 498
Bst2UI	CCWGG	5 cut(s)	474, 690, 714, 814, 876
BstAPI	GCANNNNNTGC	1 cut(s)	944
BstC8I	GCNNGC	6 cut(s)	658, 678, 702, 706, 726, 936
BstDEI	CTNAG	4 cut(s)	254, 306, 324, 426
BstF5I	GGATG	1 cut(s)	924
BstFNI	CGCG	1 cut(s)	191
BstH2I	RGCGCY	1 cut(s)	935
BstHHI	GCGC	1 cut(s)	934
BstKTI	GATC	4 cut(s)	481, 823, 954, 1030
BstMAI	GTCTC	1 cut(s)	547
BstMBI	GATC	4 cut(s)	478, 820, 951, 1027
BstMWI	GCNNNNNNNGC	4 cut(s)	666, 714, 938, 944
BstNI	CCWGG	5 cut(s)	474, 690, 714, 814, 876
BstSCI	CCNGG	5 cut(s)	472, 688, 712, 812, 874
BstSFI	CTRYAG	3 cut(s)	232, 266, 630
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	1 cut(s)	950
BsuRI	GGCC	1 cut(s)	893
BtsCI	GGATG	1 cut(s)	924
BveI	ACCTGC	3 cut(s)	705, 729, 910
Cac8I	GCNNGC	6 cut(s)	658, 678, 702, 706, 726, 936
CfoI	GCGC	1 cut(s)	934
Cfr10I	RCCGGY	1 cut(s)	941
Cfr13I	GGNCC	9 cut(s)	96, 470, 638, 662, 686, 710, 734, 891, 899
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	2 cut(s)	115, 797
CviAII	CATG	1 cut(s)	338
CviQI	GTAC	2 cut(s)	115, 797
DdeI	CTNAG	4 cut(s)	254, 306, 324, 426
DpnI	GATC	4 cut(s)	480, 822, 953, 1029
DpnII	GATC	4 cut(s)	478, 820, 951, 1027
DriI	GACNNNNNGTC	1 cut(s)	970
Eam1105I	GACNNNNNGTC	1 cut(s)	970
Eco130I	CCWWGG	2 cut(s)	177, 498
Eco24I	GRGCYC	1 cut(s)	48
Eco31I	GGTCTC	1 cut(s)	547
Eco32I	GATATC	1 cut(s)	33
Eco47I	GGWCC	8 cut(s)	96, 470, 638, 662, 686, 710, 734, 899
Eco47III	AGCGCT	1 cut(s)	933
Eco57I	CTGAAG	1 cut(s)	975
Eco88I	CYCGRG	1 cut(s)	39
EcoO109I	RGGNCCY	2 cut(s)	470, 899
EcoRI	GAATTC	4 cut(s)	319, 328, 379, 577
EcoRII	CCWGG	5 cut(s)	472, 688, 712, 812, 874
EcoRV	GATATC	1 cut(s)	33
EcoT14I	CCWWGG	2 cut(s)	177, 498
EcoT22I	ATGCAT	1 cut(s)	136
EcoT38I	GRGCYC	1 cut(s)	48
ErhI	CCWWGG	2 cut(s)	177, 498
FaeI	CATG	1 cut(s)	341
FaqI	GGGAC	2 cut(s)	46, 286
FatI	CATG	1 cut(s)	337
Fnu4HI	GCNGC	1 cut(s)	939
FokI	GGATG	1 cut(s)	931
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	1 cut(s)	939
FspBI	CTAG	3 cut(s)	753, 888, 1008
GlaI	GCGC	1 cut(s)	933
GluI	GCNGC	1 cut(s)	939
GsuI	CTGGAG	2 cut(s)	882, 948
HaeII	RGCGCY	1 cut(s)	935
HaeIII	GGCC	1 cut(s)	893
HapII	CCGG	4 cut(s)	49, 507, 894, 942
HgaI	GACGC	1 cut(s)	197
HhaI	GCGC	1 cut(s)	934
Hin1II	CATG	1 cut(s)	341
Hin6I	GCGC	1 cut(s)	932
HinP1I	GCGC	1 cut(s)	932
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	1 cut(s)	194
HpaII	CCGG	4 cut(s)	49, 507, 894, 942
HphI	GGTGA	2 cut(s)	487, 971
Hpy166II	GTNNAC	2 cut(s)	96, 734
Hpy188I	TCNGA	3 cut(s)	257, 325, 427
Hpy188III	TCNNGA	5 cut(s)	138, 289, 753, 861, 975
Hpy8I	GTNNAC	2 cut(s)	96, 734
HpyAV	CCTTC	5 cut(s)	431, 612, 759, 789, 999
HpyCH4V	TGCA	8 cut(s)	120, 134, 146, 220, 521, 590, 632, 911
HpyF10VI	GCNNNNNNNGC	4 cut(s)	666, 714, 938, 944
HpyF3I	CTNAG	4 cut(s)	254, 306, 324, 426
Hsp92II	CATG	1 cut(s)	341
HspAI	GCGC	1 cut(s)	932
Kzo9I	GATC	4 cut(s)	478, 820, 951, 1027
LmnI	GCTCC	4 cut(s)	51, 357, 863, 929
Lsp1109I	GCAGC	1 cut(s)	950
LweI	GCATC	3 cut(s)	121, 143, 994
MaeI	CTAG	3 cut(s)	753, 888, 1008
MaeIII	GTNAC	2 cut(s)	644, 1012
MalI	GATC	4 cut(s)	480, 822, 953, 1029
MboI	GATC	4 cut(s)	478, 820, 951, 1027
MboII	GAAGA	2 cut(s)	359, 946
MfeI	CAATTG	1 cut(s)	365
MhlI	GDGCHC	2 cut(s)	48, 868
MluCI	AATT	6 cut(s)	319, 328, 365, 379, 566, 577
MmeI	TCCRAC	2 cut(s)	408, 616
Mph1103I	ATGCAT	1 cut(s)	136
MspA1I	CMGCKG	1 cut(s)	1025
MspI	CCGG	4 cut(s)	49, 507, 894, 942
MspR9I	CCNGG	5 cut(s)	474, 690, 714, 814, 876
MunI	CAATTG	1 cut(s)	365
MvaI	CCWGG	5 cut(s)	474, 690, 714, 814, 876
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	4 cut(s)	666, 714, 938, 944
NdeII	GATC	4 cut(s)	478, 820, 951, 1027
NlaIII	CATG	1 cut(s)	341
NlaIV	GGNNCC	2 cut(s)	47, 946
NsiI	ATGCAT	1 cut(s)	136
PaeR7I	CTCGAG	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	194
PflMI	CCANNNNNTGG	2 cut(s)	731, 875
PkrI	GCNGC	1 cut(s)	940
PpuMI	RGGWCCY	2 cut(s)	470, 899
Psp5II	RGGWCCY	2 cut(s)	470, 899
Psp6I	CCWGG	5 cut(s)	472, 688, 712, 812, 874
PspGI	CCWGG	5 cut(s)	472, 688, 712, 812, 874
PspN4I	GGNNCC	2 cut(s)	47, 946
PspPI	GGNCC	9 cut(s)	96, 470, 638, 662, 686, 710, 734, 891, 899
PspPPI	RGGWCCY	2 cut(s)	470, 899
PspXI	VCTCGAGB	1 cut(s)	39
PstI	CTGCAG	1 cut(s)	634
PvuII	CAGCTG	1 cut(s)	1025
RsaI	GTAC	2 cut(s)	116, 798
RsaNI	GTAC	2 cut(s)	115, 797
SatI	GCNGC	1 cut(s)	939
Sau3AI	GATC	4 cut(s)	478, 820, 951, 1027
Sau96I	GGNCC	9 cut(s)	96, 470, 638, 662, 686, 710, 734, 891, 899
ScaI	AGTACT	1 cut(s)	116
ScrFI	CCNGG	5 cut(s)	474, 690, 714, 814, 876
SduI	GDGCHC	2 cut(s)	48, 868
SfaNI	GCATC	3 cut(s)	121, 143, 994
SfcI	CTRYAG	3 cut(s)	232, 266, 630
Sfr274I	CTCGAG	1 cut(s)	39
SinI	GGWCC	8 cut(s)	96, 470, 638, 662, 686, 710, 734, 899
SlaI	CTCGAG	1 cut(s)	39
SmlI	CTYRAG	2 cut(s)	39, 393
SmoI	CTYRAG	2 cut(s)	39, 393
Sse9I	AATT	6 cut(s)	319, 328, 365, 379, 566, 577
SsiI	CCGC	4 cut(s)	191, 660, 708, 767
SspMI	CTAG	3 cut(s)	753, 888, 1008
StyD4I	CCNGG	5 cut(s)	472, 688, 712, 812, 874
StyI	CCWWGG	2 cut(s)	177, 498
TaqI	TCGA	2 cut(s)	40, 605
TasI	AATT	6 cut(s)	319, 328, 365, 379, 566, 577
TatI	WGTACW	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	194
TseI	GCWGC	1 cut(s)	938
TspDTI	ATGAA	2 cut(s)	45, 590
TspGWI	ACGGA	1 cut(s)	699
Van91I	CCANNNNNTGG	2 cut(s)	731, 875
VpaK11BI	GGWCC	8 cut(s)	96, 470, 638, 662, 686, 710, 734, 899
XapI	RAATTY	4 cut(s)	319, 328, 379, 577
XbaI	TCTAGA	1 cut(s)	752
XhoI	CTCGAG	1 cut(s)	39
XspI	CTAG	3 cut(s)	753, 888, 1008
ZrmI	AGTACT	1 cut(s)	116
Zsp2I	ATGCAT	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.