Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0008058

Physical Location & Seq

Genomic Coordinates Forward (+)

30426401 .. 30428920

Gene Structure 2520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1210500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCAATTCTTCGGAGGAACGGAGATAAGCCCGTCGCTGCCGGCGTCGACGGCTTCGGGGAACAACGGGCACATGATGTACGTATTCAACCGTAACGGCGTCTGCCTCCTCTACCGCGAGTGGAATCGGCCGCTCCACACCCTGAACCAGCAGCAGGATCACAAGCTGATGTTCGGGCTCCTCTTCTCCCTCAAGTCCCTCACCGCCAAGATGGATCCCACCACGCCTGACAAGGCCAACCTCGGTGTCCCTCAGCTCCCCGGGCAGGGCTGCTCCTTCCACAGCTTCCGCACCAATACCTACAAGCTCACTTTCATGGAGTCCCCTTCTGGCATTAAGATTATATTGGTTACACATCCTAGAACTGGTGACTTGAGGGAGTCTCTGAAGTACATTTACAACTTGTATGTCGAGTATGTTGTGAAGAACCCGCTCTACACTCCCGGTACTCCGATCAGGTGTGAGCTATTCAACACAACTCTTGACCAATACGTCAGGAGCATTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006888 GO:0008150 GO:0016192 GO:0017016 GO:0017112 GO:0017137 GO:0019899 GO:0030008 GO:0031267 GO:0032991 GO:0044424 GO:0044464 GO:0046907 GO:0048193 GO:0051020 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065007 GO:0065009 GO:0098772 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sybindin

Protein Analysis

170

Amino Acids

19.19

Weight (kDa)

9.17

Isoelectric Point (pI)

29.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sybindin	PF04099	24 - 167	4.3e-53	Sybindin-like family
Sedlin_N	PF04628	98 - 166	4.8e-06	Sedlin, N-terminal conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51160 AT1G51160 AT1G51160
fragaria_vesca	FvH4_7g30501 FvH4_7g30501
malus_domestica	MD01G1210500.v1.1 MD07G1280700.v1.1
prunus_persica	Prupe.2G302900_v2.0.a1
pyrus_communis	pycom01g22100 pycom07g25530
rosa_chinensis	RchiOBHm_Chr1g0378911
rosa_laevigata	RLG00000026409
rosa_multiflora	Rmu_sc0000556.1_g000033 Rmu_sc0000556.1_g000034
rosa_rugosa	Rorug01G0411100 Rorug01G0411200 Rorug01G0411300 Rorug01G0411400
rosa_samantha	Rh1AG433900 Rh1BG391500 Rh1CG404300 Rh1DG422700
rosa_wichuraiana	Rw0G000100 Rw1G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	491
AccBSI	CCGCTC	2 cut(s)	133, 433
AccI	GTMKAC	1 cut(s)	47
AccII	CGCG	1 cut(s)	117
AciI	CCGC	5 cut(s)	115, 131, 204, 289, 431
AclWI	GGATC	3 cut(s)	165, 209, 222
AcoI	YGGCCR	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	407
AcyI	GRCGYC	2 cut(s)	44, 99
AfaI	GTAC	3 cut(s)	80, 392, 448
AfiI	CCNNNNNNNGG	4 cut(s)	154, 265, 266, 365
AgsI	TTSAA	2 cut(s)	88, 472
AluBI	AGCT	5 cut(s)	166, 256, 285, 307, 466
AluI	AGCT	5 cut(s)	166, 256, 285, 307, 466
Alw26I	GTCTC	1 cut(s)	387
AlwI	GGATC	3 cut(s)	165, 209, 222
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	2 cut(s)	128, 234
ApeKI	GCWGC	3 cut(s)	37, 151, 270
AsuC2I	CCSGG	3 cut(s)	261, 262, 444
AsuHPI	GGTGA	2 cut(s)	193, 380
AvaI	CYCGRG	1 cut(s)	260
BaeGI	GKGCMC	1 cut(s)	72
BamHI	GGATCC	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	180
BarI	GAAGNNNNNNTAC	2 cut(s)	380, 412
BbvCI	CCTCAGC	1 cut(s)	252
BbvI	GCAGC	3 cut(s)	24, 163, 257
BccI	CCATC	1 cut(s)	205
BceAI	ACGGC	2 cut(s)	66, 112
BcnI	CCSGG	3 cut(s)	261, 262, 444
BcoDI	GTCTC	1 cut(s)	387
BfaI	CTAG	1 cut(s)	360
BisI	GCNGC	4 cut(s)	38, 131, 152, 271
BlsI	GCNGC	4 cut(s)	39, 132, 153, 272
Bme1390I	CCNGG	3 cut(s)	261, 262, 444
BmeT110I	CYCGRG	1 cut(s)	260
BmiI	GGNNCC	2 cut(s)	179, 216
BmrFI	CCNGG	3 cut(s)	261, 262, 444
BplI	GAGNNNNNCTC	2 cut(s)	367, 399
Bpu10I	CCTNAGC	1 cut(s)	252
BpuEI	CTTGAG	2 cut(s)	176, 394
BpuMI	CCSGG	3 cut(s)	261, 262, 444
BsaAI	YACGTR	1 cut(s)	82
BsaHI	GRCGYC	2 cut(s)	44, 99
BsaJI	CCNNGG	3 cut(s)	241, 259, 260
Bsc4I	CCNNNNNNNGG	4 cut(s)	154, 265, 266, 365
Bse118I	RCCGGY	1 cut(s)	40
Bse1I	ACTGG	1 cut(s)	370
BseDI	CCNNGG	3 cut(s)	241, 259, 260
BseGI	GGATG	1 cut(s)	355
BseLI	CCNNNNNNNGG	4 cut(s)	154, 265, 266, 365
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	2 cut(s)	98, 170
BseSI	GKGCMC	1 cut(s)	72
BseX3I	CGGCCG	1 cut(s)	128
BseXI	GCAGC	3 cut(s)	24, 163, 257
Bsh1236I	CGCG	1 cut(s)	117
Bsh1285I	CGRYCG	1 cut(s)	131
BshFI	GGCC	2 cut(s)	130, 236
BsiEI	CGRYCG	1 cut(s)	131
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	3 cut(s)	41, 261, 444
BslFI	GGGAC	3 cut(s)	181, 233, 307
BslI	CCNNNNNNNGG	4 cut(s)	154, 265, 266, 365
BsmAI	GTCTC	1 cut(s)	387
BsmFI	GGGAC	3 cut(s)	181, 233, 307
BsnI	GGCC	2 cut(s)	130, 236
BsoBI	CYCGRG	1 cut(s)	260
Bsp1286I	GDGCHC	2 cut(s)	72, 180
Bsp143I	GATC	3 cut(s)	157, 214, 453
BspACI	CCGC	5 cut(s)	115, 131, 204, 289, 431
BspANI	GGCC	2 cut(s)	130, 236
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	179, 216
BspPI	GGATC	3 cut(s)	165, 209, 222
BsrBI	CCGCTC	2 cut(s)	133, 433
BsrFI	RCCGGY	1 cut(s)	40
BsrI	ACTGG	1 cut(s)	370
BssAI	RCCGGY	1 cut(s)	40
BssECI	CCNNGG	3 cut(s)	241, 259, 260
BssMI	GATC	3 cut(s)	157, 214, 453
BssNI	GRCGYC	2 cut(s)	44, 99
Bst4CI	ACNGT	1 cut(s)	92
Bst6I	CTCTTC	1 cut(s)	188
BstACI	GRCGYC	2 cut(s)	44, 99
BstBAI	YACGTR	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	1 cut(s)	252
BstF5I	GGATG	1 cut(s)	355
BstFNI	CGCG	1 cut(s)	117
BstKTI	GATC	3 cut(s)	160, 217, 456
BstMAI	GTCTC	1 cut(s)	387
BstMBI	GATC	3 cut(s)	157, 214, 453
BstMCI	CGRYCG	1 cut(s)	131
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 262
BstSCI	CCNGG	3 cut(s)	259, 260, 442
BstSLI	GKGCMC	1 cut(s)	72
BstSNI	TACGTA	1 cut(s)	82
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	3 cut(s)	24, 163, 257
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BstZI	CGGCCG	1 cut(s)	128
BsuRI	GGCC	2 cut(s)	130, 236
BtsCI	GGATG	1 cut(s)	355
Cac8I	GCNNGC	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	40
Cfr9I	CCCGGG	1 cut(s)	260
CseI	GACGC	2 cut(s)	33, 88
Csp6I	GTAC	3 cut(s)	79, 391, 447
CviAII	CATG	2 cut(s)	73, 316
CviQI	GTAC	3 cut(s)	79, 391, 447
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	3 cut(s)	159, 216, 455
DpnII	GATC	3 cut(s)	157, 214, 453
DrdI	GACNNNNNNGTC	1 cut(s)	491
DseDI	GACNNNNNNGTC	1 cut(s)	491
EaeI	YGGCCR	1 cut(s)	128
EagI	CGGCCG	1 cut(s)	128
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
EclXI	CGGCCG	1 cut(s)	128
Eco105I	TACGTA	1 cut(s)	82
Eco24I	GRGCYC	1 cut(s)	180
Eco52I	CGGCCG	1 cut(s)	128
Eco57I	CTGAAG	1 cut(s)	407
Eco88I	CYCGRG	1 cut(s)	260
EcoT38I	GRGCYC	1 cut(s)	180
FaeI	CATG	2 cut(s)	76, 319
FaiI	YATR	6 cut(s)	74, 317, 344, 408, 417, 508
FaqI	GGGAC	3 cut(s)	181, 233, 307
FatI	CATG	2 cut(s)	72, 315
FauI	CCCGC	1 cut(s)	438
FblI	GTMKAC	1 cut(s)	47
Fnu4HI	GCNGC	4 cut(s)	38, 131, 152, 271
FokI	GGATG	1 cut(s)	342
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	4 cut(s)	38, 131, 152, 271
FspBI	CTAG	1 cut(s)	360
GluI	GCNGC	4 cut(s)	38, 131, 152, 271
HaeIII	GGCC	2 cut(s)	130, 236
HapII	CCGG	3 cut(s)	41, 261, 444
HgaI	GACGC	2 cut(s)	33, 88
Hin1I	GRCGYC	2 cut(s)	44, 99
Hin1II	CATG	2 cut(s)	76, 319
HincII	GTYRAC	1 cut(s)	48
HindII	GTYRAC	1 cut(s)	48
HinfI	GANTC	3 cut(s)	124, 320, 380
HpaII	CCGG	3 cut(s)	41, 261, 444
HphI	GGTGA	2 cut(s)	193, 380
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	3 cut(s)	14, 387, 453
Hpy188III	TCNNGA	2 cut(s)	482, 496
Hpy8I	GTNNAC	1 cut(s)	48
Hpy99I	CGWCG	3 cut(s)	37, 49, 52
HpyAV	CCTTC	2 cut(s)	286, 336
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4IV	ACGT	2 cut(s)	81, 492
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 262
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	2 cut(s)	81, 492
Hsp92I	GRCGYC	2 cut(s)	44, 99
Hsp92II	CATG	2 cut(s)	76, 319
KroI	GCCGGC	1 cut(s)	40
KroNI	GCCGGC	1 cut(s)	42
Kzo9I	GATC	3 cut(s)	157, 214, 453
LmnI	GCTCC	5 cut(s)	138, 183, 261, 278, 498
Lsp1109I	GCAGC	3 cut(s)	24, 163, 257
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	2 cut(s)	81, 492
MaeIII	GTNAC	3 cut(s)	92, 349, 368
MalI	GATC	3 cut(s)	159, 216, 455
MbiI	CCGCTC	2 cut(s)	133, 433
MboI	GATC	3 cut(s)	157, 214, 453
MboII	GAAGA	2 cut(s)	175, 436
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	2 cut(s)	72, 180
MluCI	AATT	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	329, 389
MnlI	CCTC	9 cut(s)	8, 116, 119, 191, 200, 209, 251, 261, 369
MroNI	GCCGGC	1 cut(s)	40
MseI	TTAA	1 cut(s)	336
MslI	CAYNNNNRTG	1 cut(s)	314
MspI	CCGG	3 cut(s)	41, 261, 444
MspR9I	CCNGG	3 cut(s)	261, 262, 444
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	2 cut(s)	50, 262
NaeI	GCCGGC	1 cut(s)	42
NciI	CCSGG	3 cut(s)	261, 262, 444
NdeII	GATC	3 cut(s)	157, 214, 453
NgoMIV	GCCGGC	1 cut(s)	40
NlaIII	CATG	2 cut(s)	76, 319
NlaIV	GGNNCC	2 cut(s)	179, 216
NmuCI	GTSAC	1 cut(s)	368
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PdiI	GCCGGC	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	124
PkrI	GCNGC	4 cut(s)	39, 132, 153, 272
PleI	GAGTC	2 cut(s)	328, 388
PpsI	GAGTC	2 cut(s)	328, 388
Ppu21I	YACGTR	1 cut(s)	82
PspN4I	GGNNCC	2 cut(s)	179, 216
PsrI	GAACNNNNNNTAC	2 cut(s)	419, 451
PsuI	RGATCY	1 cut(s)	214
RsaI	GTAC	3 cut(s)	80, 392, 448
RsaNI	GTAC	3 cut(s)	79, 391, 447
RseI	CAYNNNNRTG	1 cut(s)	314
SalI	GTCGAC	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	4 cut(s)	38, 131, 152, 271
Sau3AI	GATC	3 cut(s)	157, 214, 453
SchI	GAGTC	2 cut(s)	329, 389
ScrFI	CCNGG	3 cut(s)	261, 262, 444
SduI	GDGCHC	2 cut(s)	72, 180
SgrDI	CGTCGACG	1 cut(s)	46
SmaI	CCCGGG	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	314
SmlI	CTYRAG	2 cut(s)	191, 373
SmoI	CTYRAG	2 cut(s)	191, 373
SnaBI	TACGTA	1 cut(s)	82
Sse9I	AATT	1 cut(s)	5
SsiI	CCGC	5 cut(s)	115, 131, 204, 289, 431
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	3 cut(s)	259, 260, 442
TaaI	ACNGT	1 cut(s)	92
TaiI	ACGT	2 cut(s)	84, 495
TaqI	TCGA	2 cut(s)	47, 411
TasI	AATT	1 cut(s)	5
TatI	WGTACW	1 cut(s)	390
TauI	GCSGC	1 cut(s)	133
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TseFI	GTSAC	1 cut(s)	368
TseI	GCWGC	3 cut(s)	37, 151, 270
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	2 cut(s)	304, 495
TspGWI	ACGGA	1 cut(s)	35
TspMI	CCCGGG	1 cut(s)	260
XmaI	CCCGGG	1 cut(s)	260
XmiI	GTMKAC	1 cut(s)	47
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.