Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008058

Physical Location & Seq

Genomic Coordinates Forward (+)

51616795 .. 51620152

Gene Structure 3358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0411200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGAGGAGCTTGGCGGGGATACGGGTGTTGCCGAGTTGCAGTAAAGTTTCGAGCTTTAATGGCAGACTCGTTAGCTCAAGCTTTGCTTCGAGATTTGATGGCCCAGATACTCCAAACTACGTCGTTTTGAAGTCTTCTCCGGTGGCTACTGCTGCTGCTTCAGTCAGCGGCTCCGGTGCCCAGTACTCCGGTTCTGGGGGATTGCTTGGTGTGCAAACTAAGGAGAAGAAGAAGAAGAAGGAGGGAATAGCTGGGATTGATCAAGATGAACTGGTGGAGGATCCAAAGCTTTTAGCTGACCCGGATAGTTGTTTTTGTGAGTTTAGTGGAGTGGAGATACATCATAAGGTATATGAAGCACAATTGAAGGTGCATGAGACTGAGAGTGTCTCAAGTGAGACTAAGACTGCTGGTCTTGCTATGATCTTGTTACATGGGTTTGGAGCCTCGGTTTTCTCTTGGAAGCGGGTTATGAAGCCGTTGGCCGAGGCCATTGGTTCCAAAGTTCTGGCGTTTGATAGGCCGGCGTTTGGGTTGACATCTAGGGGAAACTCTGTCAGGCATTTATCTTCTGGAAATGGGGAATCCAAACCTGTGAATCCGTATTCCATGGCATTTTCAGTGCTTGCAACCTTGTATTTTATTGATTTTCTGGTAGCTGAGAAGGCCATTATAGTGGGGCATTCAGCTGGTTCTCTTGTAGCAGTCGAGTCATATTTTGAAGCACCAGAACGTGTGGCTGCTCTAATCCTTGTCGCGCCAGCAATTTTTGCCCCAATTACAACACAGAAGGTTGTCAAGGGATCTCAACCTGGAACAAATAACCAGACAGAAGAAGATGGCTCAAATTCAGTTGAAAATGGGAATCCATTTGTCCAGTTCTCCAAGGTTCTGTCCAAATTTGCCAGATTTATTTCACAGGCAATTATGGGATTGGTGAAAGGGATGGCAGTTATGCTCAACTCTTTGTATAAGAAATTCTTGTCAGCTCTTCTGCGCTCTGCTTTTGCGATAATGCTGGTAAGAATGGCAATCAATAAATTCGGTATCGCTGCTGTTAGGAATGCTTGGTATGACTCGAAGAAAGTCACGGATGAAGACATCAGTGGTTATACAAAGCCATTGAGGACGAAGGGTTGGGATAAGGCACTTGTGGAGTACACCGCAGCAATGCTCACAGACACTTCATCTGAATCAAAGCCACCATTGGCAAAGAGACTCCGTGATATCAAATGTCCTGTTCTGATTGTTACCGGTGATACTGACCGAATTGTCCCGTCATGGAATGCGAAGAGACTTTCAAAAGCCATACCGGGGTCTTGCTTTGAAGTAATAAAGCGTTGTGGGCACTTGCCACATGAAGAGAAAGCTGACGAGTTTGTTTCAATAGTTAAGAAATTTCTACAAACTGCTTTTGATGATTCTCCGCAGGAGCAATTACAAGTTATAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006888 GO:0008150 GO:0016192 GO:0017016 GO:0017112 GO:0017137 GO:0019899 GO:0030008 GO:0031267 GO:0032991 GO:0044424 GO:0044464 GO:0046907 GO:0048193 GO:0051020 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065007 GO:0065009 GO:0098772 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sybindin

Protein Analysis

484

Amino Acids

52.32

Weight (kDa)

9.11

Isoelectric Point (pI)

34.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	140 - 259	5.9e-07	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	141 - 457	1.2e-19	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	142 - 462	3.5e-22	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51160 AT1G51160 AT1G51160
fragaria_vesca	FvH4_7g30501 FvH4_7g30501
malus_domestica	MD01G1210500.v1.1 MD07G1280700.v1.1
prunus_persica	Prupe.2G302900_v2.0.a1
pyrus_communis	pycom01g22100 pycom07g25530
rosa_chinensis	RchiOBHm_Chr1g0378911
rosa_laevigata	RLG00000026409
rosa_multiflora	Rmu_sc0000556.1_g000033 Rmu_sc0000556.1_g000034
rosa_rugosa	Rorug01G0411100 Rorug01G0411200 Rorug01G0411300 Rorug01G0411400
rosa_samantha	Rh1AG433900 Rh1BG391500 Rh1CG404300 Rh1DG422700
rosa_wichuraiana	Rw0G000100 Rw1G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1271
AccB1I	GGYRCC	1 cut(s)	176
AccII	CGCG	1 cut(s)	758
AciI	CCGC	5 cut(s)	14, 168, 466, 1164, 1427
AclWI	GGATC	3 cut(s)	275, 288, 811
AcoI	YGGCCR	1 cut(s)	483
AcsI	RAATTY	5 cut(s)	847, 899, 977, 1040, 1397
AcuI	CTGAAG	1 cut(s)	144
AfaI	GTAC	2 cut(s)	185, 1160
AfiI	CCNNNNNNNGG	3 cut(s)	195, 530, 1314
AflIII	ACRYGT	1 cut(s)	733
AgeI	ACCGGT	1 cut(s)	1253
AgsI	TTSAA	7 cut(s)	130, 367, 722, 857, 1302, 1328, 1386
AhdI	GACNNNNNGTC	1 cut(s)	411
AjnI	CCWGG	1 cut(s)	811
Alw26I	GTCTC	5 cut(s)	371, 392, 394, 1210, 1288
AlwI	GGATC	3 cut(s)	275, 288, 811
AoxI	GGCC	5 cut(s)	100, 483, 489, 521, 666
ApeKI	GCWGC	5 cut(s)	152, 155, 740, 1052, 1166
ApoI	RAATTY	5 cut(s)	847, 899, 977, 1040, 1397
AsiGI	ACCGGT	1 cut(s)	1253
AspLEI	GCGC	2 cut(s)	760, 999
AspS9I	GGNCC	1 cut(s)	101
AsuC2I	CCSGG	2 cut(s)	302, 1314
AsuHPI	GGTGA	2 cut(s)	949, 1268
BaeGI	GKGCMC	2 cut(s)	181, 1350
BaeI	ACNNNNGTAYC	2 cut(s)	11, 44
BamHI	GGATCC	1 cut(s)	280
BanI	GGYRCC	1 cut(s)	176
BbsI	GAAGAC	2 cut(s)	126, 1104
BbvI	GCAGC	5 cut(s)	139, 142, 727, 1039, 1178
BccI	CCATC	3 cut(s)	92, 833, 940
BceAI	ACGGC	1 cut(s)	463
BciT130I	CCWGG	1 cut(s)	813
BciVI	GTATCC	1 cut(s)	12
BclI	TGATCA	1 cut(s)	259
BcnI	CCSGG	2 cut(s)	302, 1314
BcoDI	GTCTC	5 cut(s)	371, 392, 394, 1210, 1288
BfaI	CTAG	1 cut(s)	543
BfuI	GTATCC	1 cut(s)	12
BisI	GCNGC	6 cut(s)	153, 156, 169, 741, 1053, 1167
BlsI	GCNGC	6 cut(s)	154, 157, 170, 742, 1054, 1168
BmcAI	AGTACT	1 cut(s)	185
Bme1390I	CCNGG	3 cut(s)	302, 813, 1314
BmeRI	GACNNNNNGTC	1 cut(s)	411
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	5 cut(s)	172, 178, 282, 445, 499
BmrFI	CCNGG	3 cut(s)	302, 813, 1314
BmrI	ACTGGG	1 cut(s)	175
BmuI	ACTGGG	1 cut(s)	175
BpiI	GAAGAC	2 cut(s)	126, 1104
BplI	GAGNNNNNCTC	2 cut(s)	374, 406
BpuEI	CTTGAG	2 cut(s)	61, 376
BpuMI	CCSGG	2 cut(s)	302, 1314
BsaJI	CCNNGG	5 cut(s)	447, 486, 609, 885, 1313
BsaWI	WCCGGW	4 cut(s)	139, 173, 188, 1253
BsaXI	ACNNNNNCTCC	2 cut(s)	435, 465
Bsc4I	CCNNNNNNNGG	3 cut(s)	195, 530, 1314
Bse118I	RCCGGY	2 cut(s)	523, 1253
Bse1I	ACTGG	3 cut(s)	181, 276, 877
Bse3DI	GCAATG	1 cut(s)	1176
BseBI	CCWGG	1 cut(s)	813
BseDI	CCNNGG	5 cut(s)	447, 486, 609, 885, 1313
BseGI	GGATG	2 cut(s)	951, 1099
BseLI	CCNNNNNNNGG	3 cut(s)	195, 530, 1314
BseMI	GCAATG	1 cut(s)	1176
BseMII	CTCAG	2 cut(s)	372, 651
BseNI	ACTGG	3 cut(s)	181, 276, 877
BseRI	GAGGAG	1 cut(s)	19
BseSI	GKGCMC	2 cut(s)	181, 1350
BseXI	GCAGC	5 cut(s)	139, 142, 727, 1039, 1178
BseYI	CCCAGC	1 cut(s)	251
Bsh1236I	CGCG	1 cut(s)	758
BshFI	GGCC	5 cut(s)	102, 485, 491, 523, 668
BshNI	GGYRCC	1 cut(s)	176
BshTI	ACCGGT	1 cut(s)	1253
BsiSI	CCGG	7 cut(s)	140, 174, 189, 302, 524, 1254, 1313
BslFI	GGGAC	1 cut(s)	1259
BslI	CCNNNNNNNGG	3 cut(s)	195, 530, 1314
BsmAI	GTCTC	5 cut(s)	371, 392, 394, 1210, 1288
BsmFI	GGGAC	1 cut(s)	1259
BsmI	GAATGC	3 cut(s)	682, 1069, 1291
BsnI	GGCC	5 cut(s)	102, 485, 491, 523, 668
Bsp1286I	GDGCHC	2 cut(s)	181, 1350
Bsp143I	GATC	4 cut(s)	259, 280, 423, 803
Bsp19I	CCATGG	1 cut(s)	609
BspACI	CCGC	5 cut(s)	14, 168, 466, 1164, 1427
BspANI	GGCC	5 cut(s)	102, 485, 491, 523, 668
BspCNI	CTCAG	2 cut(s)	373, 652
BspFNI	CGCG	1 cut(s)	758
BspLI	GGNNCC	5 cut(s)	172, 178, 282, 445, 499
BspPI	GGATC	3 cut(s)	275, 288, 811
BspQI	GCTCTTC	1 cut(s)	996
BspT107I	GGYRCC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	1176
BsrFI	RCCGGY	2 cut(s)	523, 1253
BsrI	ACTGG	3 cut(s)	181, 276, 877
BssAI	RCCGGY	2 cut(s)	523, 1253
BssECI	CCNNGG	5 cut(s)	447, 486, 609, 885, 1313
BssMI	GATC	4 cut(s)	259, 280, 423, 803
BssT1I	CCWWGG	2 cut(s)	609, 885
Bst2UI	CCWGG	1 cut(s)	813
Bst6I	CTCTTC	3 cut(s)	996, 1286, 1356
BstAPI	GCANNNNNTGC	1 cut(s)	770
BstC8I	GCNNGC	3 cut(s)	525, 627, 762
BstDEI	CTNAG	4 cut(s)	219, 381, 402, 660
BstDSI	CCRYGG	1 cut(s)	609
BstF5I	GGATG	2 cut(s)	951, 1099
BstFNI	CGCG	1 cut(s)	758
BstHHI	GCGC	2 cut(s)	760, 999
BstKTI	GATC	4 cut(s)	262, 283, 426, 806
BstMAI	GTCTC	5 cut(s)	371, 392, 394, 1210, 1288
BstMBI	GATC	4 cut(s)	259, 280, 423, 803
BstMWI	GCNNNNNNNGC	7 cut(s)	60, 152, 211, 416, 665, 770, 1345
BstNI	CCWGG	1 cut(s)	813
BstSCI	CCNGG	3 cut(s)	300, 811, 1312
BstSLI	GKGCMC	2 cut(s)	181, 1350
BstUI	CGCG	1 cut(s)	758
BstV1I	GCAGC	5 cut(s)	139, 142, 727, 1039, 1178
BstV2I	GAAGAC	2 cut(s)	126, 1104
BstX2I	RGATCY	2 cut(s)	280, 803
BstXI	CCANNNNNNTGG	2 cut(s)	508, 676
BstYI	RGATCY	2 cut(s)	280, 803
BsuI	GTATCC	1 cut(s)	12
BsuRI	GGCC	5 cut(s)	102, 485, 491, 523, 668
BtgI	CCRYGG	1 cut(s)	609
BtsCI	GGATG	2 cut(s)	951, 1099
BtsIMutI	CAGTG	2 cut(s)	627, 1111
Cac8I	GCNNGC	3 cut(s)	525, 627, 762
CfoI	GCGC	2 cut(s)	760, 999
Cfr10I	RCCGGY	2 cut(s)	523, 1253
Cfr13I	GGNCC	1 cut(s)	101
Csp6I	GTAC	2 cut(s)	184, 1159
CspAI	ACCGGT	1 cut(s)	1253
CviAII	CATG	5 cut(s)	374, 434, 610, 1281, 1358
CviQI	GTAC	2 cut(s)	184, 1159
DdeI	CTNAG	4 cut(s)	219, 381, 402, 660
DpnI	GATC	4 cut(s)	261, 282, 425, 805
DpnII	GATC	4 cut(s)	259, 280, 423, 803
DrdI	GACNNNNNNGTC	1 cut(s)	1271
DriI	GACNNNNNGTC	1 cut(s)	411
DseDI	GACNNNNNNGTC	1 cut(s)	1271
EaeI	YGGCCR	1 cut(s)	483
Eam1104I	CTCTTC	3 cut(s)	996, 1286, 1356
Eam1105I	GACNNNNNGTC	1 cut(s)	411
EarI	CTCTTC	3 cut(s)	996, 1286, 1356
Eco130I	CCWWGG	2 cut(s)	609, 885
Eco32I	GATATC	1 cut(s)	1228
Eco57I	CTGAAG	1 cut(s)	144
EcoRII	CCWGG	1 cut(s)	811
EcoRV	GATATC	1 cut(s)	1228
EcoT14I	CCWWGG	2 cut(s)	609, 885
ErhI	CCWWGG	2 cut(s)	609, 885
FaeI	CATG	5 cut(s)	377, 437, 613, 1284, 1361
FalI	AAGNNNNNCTT	4 cut(s)	70, 102, 965, 997
FaqI	GGGAC	1 cut(s)	1259
FatI	CATG	5 cut(s)	373, 433, 609, 1280, 1357
FauI	CCCGC	2 cut(s)	7, 459
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	6 cut(s)	153, 156, 169, 741, 1053, 1167
FokI	GGATG	2 cut(s)	958, 1106
Fsp4HI	GCNGC	6 cut(s)	153, 156, 169, 741, 1053, 1167
FspBI	CTAG	1 cut(s)	543
GlaI	GCGC	2 cut(s)	759, 998
GluI	GCNGC	6 cut(s)	153, 156, 169, 741, 1053, 1167
GsaI	CCCAGC	1 cut(s)	255
HaeIII	GGCC	5 cut(s)	102, 485, 491, 523, 668
HapII	CCGG	7 cut(s)	140, 174, 189, 302, 524, 1254, 1313
HhaI	GCGC	2 cut(s)	760, 999
Hin1II	CATG	5 cut(s)	377, 437, 613, 1284, 1361
Hin6I	GCGC	2 cut(s)	758, 997
HinP1I	GCGC	2 cut(s)	758, 997
HincII	GTYRAC	1 cut(s)	537
HindII	GTYRAC	1 cut(s)	537
HindIII	AAGCTT	2 cut(s)	79, 287
HinfI	GANTC	9 cut(s)	66, 584, 598, 710, 865, 1076, 1193, 1218, 1421
HpaII	CCGG	7 cut(s)	140, 174, 189, 302, 524, 1254, 1313
HphI	GGTGA	2 cut(s)	949, 1268
Hpy166II	GTNNAC	2 cut(s)	537, 1161
Hpy188I	TCNGA	2 cut(s)	1192, 1245
Hpy188III	TCNNGA	3 cut(s)	90, 263, 573
Hpy8I	GTNNAC	2 cut(s)	537, 1161
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	5 cut(s)	232, 361, 658, 784, 1126
HpyCH4IV	ACGT	2 cut(s)	120, 733
HpyCH4V	TGCA	4 cut(s)	39, 214, 373, 629
HpyF10VI	GCNNNNNNNGC	7 cut(s)	60, 152, 211, 416, 665, 770, 1345
HpyF3I	CTNAG	4 cut(s)	219, 381, 402, 660
HpySE526I	ACGT	2 cut(s)	120, 733
Hsp92II	CATG	5 cut(s)	377, 437, 613, 1284, 1361
HspAI	GCGC	2 cut(s)	758, 997
KroI	GCCGGC	1 cut(s)	523
KroNI	GCCGGC	1 cut(s)	525
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	4 cut(s)	259, 280, 423, 803
LguI	GCTCTTC	1 cut(s)	996
LmnI	GCTCC	4 cut(s)	6, 176, 443, 1432
Lsp1109I	GCAGC	5 cut(s)	139, 142, 727, 1039, 1178
MaeI	CTAG	1 cut(s)	543
MaeII	ACGT	2 cut(s)	120, 733
MaeIII	GTNAC	3 cut(s)	429, 1087, 1249
MalI	GATC	4 cut(s)	261, 282, 425, 805
MboI	GATC	4 cut(s)	259, 280, 423, 803
MfeI	CAATTG	1 cut(s)	362
MflI	RGATCY	2 cut(s)	280, 803
MhlI	GDGCHC	2 cut(s)	181, 1350
MlyI	GAGTC	4 cut(s)	60, 719, 1070, 1212
MnlI	CCTC	5 cut(s)	235, 271, 457, 481, 1119
MroNI	GCCGGC	1 cut(s)	523
MseI	TTAA	2 cut(s)	57, 1392
MslI	CAYNNNNRTG	1 cut(s)	674
MspA1I	CMGCKG	2 cut(s)	168, 689
MspI	CCGG	7 cut(s)	140, 174, 189, 302, 524, 1254, 1313
MspR9I	CCNGG	3 cut(s)	302, 813, 1314
MunI	CAATTG	1 cut(s)	362
Mva1269I	GAATGC	3 cut(s)	682, 1069, 1291
MvaI	CCWGG	1 cut(s)	813
MvnI	CGCG	1 cut(s)	758
MwoI	GCNNNNNNNGC	7 cut(s)	60, 152, 211, 416, 665, 770, 1345
NaeI	GCCGGC	1 cut(s)	525
NciI	CCSGG	2 cut(s)	302, 1314
NcoI	CCATGG	1 cut(s)	609
NdeII	GATC	4 cut(s)	259, 280, 423, 803
NgoMIV	GCCGGC	1 cut(s)	523
NlaIII	CATG	5 cut(s)	377, 437, 613, 1284, 1361
NlaIV	GGNNCC	5 cut(s)	172, 178, 282, 445, 499
NmeAIII	GCCGAG	2 cut(s)	57, 511
NmuCI	GTSAC	1 cut(s)	1087
PciSI	GCTCTTC	1 cut(s)	996
PctI	GAATGC	3 cut(s)	682, 1069, 1291
PdiI	GCCGGC	1 cut(s)	525
PfeI	GAWTC	5 cut(s)	584, 598, 865, 1193, 1421
PinAI	ACCGGT	1 cut(s)	1253
PkrI	GCNGC	6 cut(s)	154, 157, 170, 742, 1054, 1168
PleI	GAGTC	4 cut(s)	60, 718, 1070, 1212
PpsI	GAGTC	4 cut(s)	60, 718, 1070, 1212
Psp6I	CCWGG	1 cut(s)	811
PspFI	CCCAGC	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	811
PspN4I	GGNNCC	5 cut(s)	172, 178, 282, 445, 499
PspPI	GGNCC	1 cut(s)	101
PsuI	RGATCY	2 cut(s)	280, 803
PvuII	CAGCTG	1 cut(s)	689
RsaI	GTAC	2 cut(s)	185, 1160
RsaNI	GTAC	2 cut(s)	184, 1159
RseI	CAYNNNNRTG	1 cut(s)	674
SapI	GCTCTTC	1 cut(s)	996
SaqAI	TTAA	2 cut(s)	57, 1392
SatI	GCNGC	6 cut(s)	153, 156, 169, 741, 1053, 1167
Sau3AI	GATC	4 cut(s)	259, 280, 423, 803
Sau96I	GGNCC	1 cut(s)	101
ScaI	AGTACT	1 cut(s)	185
SchI	GAGTC	4 cut(s)	60, 719, 1070, 1212
ScrFI	CCNGG	3 cut(s)	302, 813, 1314
SduI	GDGCHC	2 cut(s)	181, 1350
SmiMI	CAYNNNNRTG	1 cut(s)	674
SmlI	CTYRAG	2 cut(s)	76, 391
SmoI	CTYRAG	2 cut(s)	76, 391
SsiI	CCGC	5 cut(s)	14, 168, 466, 1164, 1427
SspMI	CTAG	1 cut(s)	543
StyD4I	CCNGG	3 cut(s)	300, 811, 1312
StyI	CCWWGG	2 cut(s)	609, 885
TaiI	ACGT	2 cut(s)	123, 736
TaqI	TCGA	4 cut(s)	50, 89, 708, 1079
TaqII	GACCGA	1 cut(s)	1281
TatI	WGTACW	2 cut(s)	183, 1158
TauI	GCSGC	1 cut(s)	171
TfiI	GAWTC	5 cut(s)	584, 598, 865, 1193, 1421
Tru1I	TTAA	2 cut(s)	57, 1392
Tru9I	TTAA	2 cut(s)	57, 1392
TscAI	CASTG	2 cut(s)	627, 1111
TseFI	GTSAC	1 cut(s)	1087
TseI	GCWGC	5 cut(s)	152, 155, 740, 1052, 1166
Tsp45I	GTSAC	1 cut(s)	1087
TspDTI	ATGAA	6 cut(s)	282, 369, 488, 1110, 1176, 1374
TspGWI	ACGGA	3 cut(s)	591, 1106, 1211
TspRI	CASTG	2 cut(s)	627, 1111
XapI	RAATTY	5 cut(s)	847, 899, 977, 1040, 1397
XspI	CTAG	1 cut(s)	543
ZrmI	AGTACT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.