Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007847

Physical Location & Seq

Genomic Coordinates Reverse (-)

19458612 .. 19459763

Gene Structure 1152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G52245.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGTTGGAAGGCAAAGCAATGGTGGAAGATTCAGACATGCCAGTGAAGATGCAGATGCAAGCTATGGCATTTGCTTCTCAAGCTCTTGACCTTTTTGATGTCTTTGACTGTAAATCCATTGCTGGTCACATCAAGAAGGAGTTTGATGAGAGATATGGGAGTGGATGGCAATGTGTGGTGGGATCAAATTTTGGGTGTTTCTTCACACATTCTAAAGGGACTTTTATCTATTTTCAATTGGAGACACTTAAGTTCCTCATCTTTAAAGGCGCTTCTACTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000775 GO:0000776 GO:0001505 GO:0002791 GO:0002793 GO:0003006 GO:0003674 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005868 GO:0005875 GO:0006807 GO:0006809 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0008092 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010646 GO:0010647 GO:0010817 GO:0010970 GO:0012505 GO:0015630 GO:0016043 GO:0017144 GO:0019899 GO:0019953 GO:0022412 GO:0022414 GO:0022607 GO:0023051 GO:0023056 GO:0030030 GO:0030031 GO:0030141 GO:0030154 GO:0030234 GO:0030235 GO:0030286 GO:0030424 GO:0030705 GO:0031410 GO:0031982 GO:0032024 GO:0032501 GO:0032502 GO:0032504 GO:0032781 GO:0032838 GO:0032879 GO:0032880 GO:0032991 GO:0033267 GO:0034641 GO:0035774 GO:0042133 GO:0042136 GO:0042802 GO:0042803 GO:0042995 GO:0043005 GO:0043085 GO:0043086 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043462 GO:0044085 GO:0044092 GO:0044093 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044703 GO:0044782 GO:0045505 GO:0046209 GO:0046883 GO:0046887 GO:0046907 GO:0046982 GO:0046983 GO:0048232 GO:0048468 GO:0048515 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048609 GO:0048856 GO:0048869 GO:0050708 GO:0050714 GO:0050789 GO:0050790 GO:0050794 GO:0050796 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051704 GO:0051959 GO:0060271 GO:0060341 GO:0061178 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0070925 GO:0071840 GO:0072593 GO:0072686 GO:0090087 GO:0090276 GO:0090277 GO:0097110 GO:0097458 GO:0097708 GO:0098687 GO:0098772 GO:0099111 GO:0099503 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:0120111 GO:1902494 GO:1903409 GO:1903530 GO:1903532 GO:1904115 GO:1904951 GO:2000574 GO:2000576 GO:2000580 GO:2000582 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

94

Amino Acids

10.58

Weight (kDa)

5.54

Isoelectric Point (pI)

23.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	5 - 89	5.2e-33	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0007847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52245
fragaria_vesca	FvH4_1g04420 FvH4_6g31660
malus_domestica	MD15G1182600.v1.1 MD17G1192300.v1.1
prunus_persica	Prupe.3G068100_v2.0.a1 Prupe.7G233000_v2.0.a1
pyrus_communis	pycom15g16500
rosa_chinensis	RchiOBHm_Chr2g0090071 RchiOBHm_Chr2g0138711
rosa_multiflora	Rmu_sc0000226.1_g000004 Rmu_sc0006243.1_g000010 Rmu_sc0007053.1_g000008
rosa_roxburghii	Rroxscaffold_2G00105990 Rroxscaffold_2G00151420
rosa_rugosa	Rorug02G0005100 Rorug02G0352500
rosa_samantha	Rh2BG049400 Rh2BG405600 Rh2CG051600 Rh2CG388200 Rh2DG051000
rosa_wichuraiana	Rw2G003980 Rw2G032680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	190
AcsI	RAATTY	1 cut(s)	187
AflII	CTTAAG	1 cut(s)	248
AgsI	TTSAA	1 cut(s)	236
AluBI	AGCT	2 cut(s)	62, 83
AluI	AGCT	2 cut(s)	62, 83
Alw26I	GTCTC	1 cut(s)	236
AlwI	GGATC	1 cut(s)	190
ApoI	RAATTY	1 cut(s)	187
AspLEI	GCGC	1 cut(s)	272
BccI	CCATC	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	236
BfoI	RGCGCY	1 cut(s)	273
BfrI	CTTAAG	1 cut(s)	248
BmsI	GCATC	2 cut(s)	39, 45
BpuEI	CTTGAG	1 cut(s)	63
Bse1I	ACTGG	1 cut(s)	41
Bse3DI	GCAATG	3 cut(s)	24, 117, 176
BseGI	GGATG	1 cut(s)	170
BseMI	GCAATG	3 cut(s)	24, 117, 176
BseNI	ACTGG	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	232
BsmAI	GTCTC	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	232
Bsp143I	GATC	1 cut(s)	182
BspPI	GGATC	1 cut(s)	190
BspTI	CTTAAG	1 cut(s)	248
BsrDI	GCAATG	3 cut(s)	24, 117, 176
BsrI	ACTGG	1 cut(s)	41
BssMI	GATC	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	110
BstAFI	CTTAAG	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	170
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	1 cut(s)	185
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	1 cut(s)	182
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNSI	RCATGY	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	170
BtsIMutI	CAGTG	1 cut(s)	48
Cac8I	GCNNGC	1 cut(s)	60
CfoI	GCGC	1 cut(s)	272
CviAII	CATG	1 cut(s)	37
CviJI	RGCY	2 cut(s)	62, 83
CviKI_1	RGCY	2 cut(s)	62, 83
DpnI	GATC	1 cut(s)	184
DpnII	GATC	1 cut(s)	182
DraI	TTTAAA	1 cut(s)	265
FaeI	CATG	1 cut(s)	40
FaiI	YATR	3 cut(s)	38, 65, 156
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	1 cut(s)	36
FokI	GGATG	1 cut(s)	177
GlaI	GCGC	1 cut(s)	271
HaeII	RGCGCY	1 cut(s)	273
HhaI	GCGC	1 cut(s)	272
Hin1II	CATG	1 cut(s)	40
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HinfI	GANTC	1 cut(s)	29
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	2 cut(s)	86, 133
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4V	TGCA	2 cut(s)	52, 58
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
Hsp92II	CATG	1 cut(s)	40
HspAI	GCGC	1 cut(s)	270
Kzo9I	GATC	1 cut(s)	182
LpnPI	CCDG	2 cut(s)	54, 108
LweI	GCATC	2 cut(s)	39, 45
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	1 cut(s)	184
MboI	GATC	1 cut(s)	182
MboII	GAAGA	3 cut(s)	38, 58, 193
MfeI	CAATTG	1 cut(s)	236
MluCI	AATT	2 cut(s)	187, 236
MnlI	CCTC	1 cut(s)	266
MseI	TTAA	3 cut(s)	249, 264, 283
MslI	CAYNNNNRTG	1 cut(s)	41
MspCI	CTTAAG	1 cut(s)	248
MunI	CAATTG	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	1 cut(s)	182
NlaIII	CATG	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	125
NspI	RCATGY	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	29
RseI	CAYNNNNRTG	1 cut(s)	41
SaqAI	TTAA	3 cut(s)	249, 264, 283
Sau3AI	GATC	1 cut(s)	182
SetI	ASST	3 cut(s)	64, 85, 93
SfaNI	GCATC	2 cut(s)	39, 45
SgeI	CNNG	7 cut(s)	49, 53, 71, 92, 98, 135, 145
SmiMI	CAYNNNNRTG	1 cut(s)	41
SmlI	CTYRAG	2 cut(s)	78, 248
SmoI	CTYRAG	2 cut(s)	78, 248
Sse9I	AATT	2 cut(s)	187, 236
TaaI	ACNGT	1 cut(s)	110
TasI	AATT	2 cut(s)	187, 236
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	3 cut(s)	249, 264, 283
Tru9I	TTAA	3 cut(s)	249, 264, 283
TscAI	CASTG	1 cut(s)	48
TseFI	GTSAC	1 cut(s)	125
Tsp45I	GTSAC	1 cut(s)	125
TspRI	CASTG	1 cut(s)	48
Vha464I	CTTAAG	1 cut(s)	248
XapI	RAATTY	1 cut(s)	187
XceI	RCATGY	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.