MD15G1182600.v1.1

Dynein light chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0007847
Physical Location & Seq
Reverse (-)
14471114 .. 14472535
1422 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1182600.v1.1.491

Sequence Viewer

Length: 282 bp
ATGTTGGAAGGGAAAGCTACGATAAGGGAAGCAGACATGCCAGAAAAGATGCAGATGCAAGCCATGGCTTGTGCTTCTCAAGCCCTTGATCTCCATGACGTTTTTGATTGCAAATCCATAGCCGCCCACATCAAGAAGGAGTTTGACAAGATGTATGGGAGTGGGTGGCAGTGTGTGGTGGGCTCTAACTTCGGTTGTTTCTTCACTCATTCACCTGGAACTTTCATATATTTTGCTCTGGAGACCCTCAATTTCCTTGTCTTTAAGGCTGCCTCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04962 map04962
Pfam Domains
Protein Families
Dynein_light

Protein Analysis

94

Amino Acids

10.34

Weight (kDa)

5.82

Isoelectric Point (pI)

35.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynein_light PF01221 5 - 90 1.4e-34 Dynein light chain type 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 123
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
Alw26I GTCTC 1 cut(s) 236
ApeKI GCWGC 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 204
BanII GRGCYC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 256
BciT130I CCWGG 1 cut(s) 216
BcoDI GTCTC 1 cut(s) 236
BisI GCNGC 2 cut(s) 123, 270
BlsI GCNGC 2 cut(s) 124, 271
Bme1390I CCNGG 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 216
BmsI GCATC 2 cut(s) 39, 45
BpmI CTGGAG 1 cut(s) 260
BpuEI CTTGAG 1 cut(s) 63
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 1 cut(s) 63
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 63
BseXI GCAGC 1 cut(s) 256
BsmAI GTCTC 1 cut(s) 236
Bso31I GGTCTC 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 185
Bsp143I GATC 1 cut(s) 88
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 1 cut(s) 123
BspTNI GGTCTC 1 cut(s) 236
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 63
Bst2UI CCWGG 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 60
BstDSI CCRYGG 1 cut(s) 63
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNI CCWGG 1 cut(s) 216
BstNSI RCATGY 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 214
BstV1I GCAGC 1 cut(s) 256
BtgI CCRYGG 1 cut(s) 63
BtsI GCAGTG 1 cut(s) 176
BtsIMutI CAGTG 1 cut(s) 176
Cac8I GCNNGC 1 cut(s) 60
CviAII CATG 3 cut(s) 37, 64, 95
CviJI RGCY 7 cut(s) 17, 62, 68, 83, 122, 183, 269
CviKI_1 RGCY 7 cut(s) 17, 62, 68, 83, 122, 183, 269
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 63
Eco24I GRGCYC 1 cut(s) 185
Eco31I GGTCTC 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 63
EcoT38I GRGCYC 1 cut(s) 185
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 3 cut(s) 40, 67, 98
FaiI YATR 7 cut(s) 38, 65, 96, 119, 156, 227, 229
FatI CATG 3 cut(s) 36, 63, 94
Fnu4HI GCNGC 2 cut(s) 123, 270
FriOI GRGCYC 1 cut(s) 185
Fsp4HI GCNGC 2 cut(s) 123, 270
GluI GCNGC 2 cut(s) 123, 270
GsuI CTGGAG 1 cut(s) 260
Hin1II CATG 3 cut(s) 40, 67, 98
HphI GGTGA 1 cut(s) 204
Hpy188III TCNNGA 3 cut(s) 133, 239, 279
HpyAV CCTTC 1 cut(s) 130
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 3 cut(s) 52, 58, 111
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 3 cut(s) 40, 67, 98
Kzo9I GATC 1 cut(s) 88
LpnPI CCDG 4 cut(s) 54, 201, 224, 228
Lsp1109I GCAGC 1 cut(s) 256
LweI GCATC 2 cut(s) 39, 45
MaeII ACGT 1 cut(s) 99
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 2 cut(s) 193, 267
MhlI GDGCHC 1 cut(s) 185
MluCI AATT 1 cut(s) 250
MnlI CCTC 1 cut(s) 257
MseI TTAA 1 cut(s) 264
MspR9I CCNGG 1 cut(s) 216
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 1 cut(s) 80
NcoI CCATGG 1 cut(s) 63
NdeII GATC 1 cut(s) 88
NlaIII CATG 3 cut(s) 40, 67, 98
NspI RCATGY 1 cut(s) 40
PkrI GCNGC 2 cut(s) 124, 271
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 2 cut(s) 123, 270
Sau3AI GATC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 216
SduI GDGCHC 1 cut(s) 185
SetI ASST 3 cut(s) 19, 102, 217
SfaNI GCATC 2 cut(s) 39, 45
SmlI CTYRAG 1 cut(s) 78
SmoI CTYRAG 1 cut(s) 78
Sse9I AATT 1 cut(s) 250
SsiI CCGC 1 cut(s) 123
StyD4I CCNGG 1 cut(s) 214
StyI CCWWGG 1 cut(s) 63
TaiI ACGT 1 cut(s) 102
TasI AATT 1 cut(s) 250
TauI GCSGC 1 cut(s) 125
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TscAI CASTG 1 cut(s) 176
TseI GCWGC 1 cut(s) 269
TspDTI ATGAA 1 cut(s) 214
TspRI CASTG 1 cut(s) 176
XceI RCATGY 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.