MD17G1192300.v1.1

Dynein light

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0007847
Physical Location & Seq
Forward (+)
22938343 .. 22941313
2971 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1192300.v1.1.491

Sequence Viewer

Length: 303 bp
ATGTTGGAAGGCAGAGCAGTGATAGAGGACACAGATATGCCGGTGAAGATGCAGATGCAAGCCATGGCAGCTGCTTCTGAAGCTCTGGATCTTCACGATGTCGTTGACTGCAGATCTATAGCTGCCCACATAAAAAAGGAGTTTGACATGAGATATGGATGCGGTTGGCAATGTGTGGTGGGATCAAATTTCGGTTGTTTTTTCACTCACTGTAAAGGAACTTTCATCTACTTTACACTTGAGACTCTCAGCTTCCTAATCTTCAAAGGGGATTCTTCTTCCTCCTCCTCCTCCAAAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000775 GO:0000776 GO:0001505 GO:0002791 GO:0002793 GO:0003006 GO:0003674 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005868 GO:0005875 GO:0006807 GO:0006809 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0008092 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010646 GO:0010647 GO:0010817 GO:0010970 GO:0012505 GO:0015630 GO:0016043 GO:0017144 GO:0019899 GO:0019953 GO:0022412 GO:0022414 GO:0022607 GO:0023051 GO:0023056 GO:0030030 GO:0030031 GO:0030141 GO:0030154 GO:0030234 GO:0030235 GO:0030286 GO:0030424 GO:0030705 GO:0031410 GO:0031982 GO:0032024 GO:0032501 GO:0032502 GO:0032504 GO:0032781 GO:0032838 GO:0032879 GO:0032880 GO:0032991 GO:0033267 GO:0034641 GO:0035774 GO:0042133 GO:0042136 GO:0042802 GO:0042803 GO:0042995 GO:0043005 GO:0043085 GO:0043086 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043462 GO:0044085 GO:0044092 GO:0044093 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044703 GO:0044782 GO:0045505 GO:0046209 GO:0046883 GO:0046887 GO:0046907 GO:0046982 GO:0046983 GO:0048232 GO:0048468 GO:0048515 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048609 GO:0048856 GO:0048869 GO:0050708 GO:0050714 GO:0050789 GO:0050790 GO:0050794 GO:0050796 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051704 GO:0051959 GO:0060271 GO:0060341 GO:0061178 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0070925 GO:0071840 GO:0072593 GO:0072686 GO:0090087 GO:0090276 GO:0090277 GO:0097110 GO:0097458 GO:0097708 GO:0098687 GO:0098772 GO:0099111 GO:0099503 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:0120111 GO:1902494 GO:1903409 GO:1903530 GO:1903532 GO:1904115 GO:1904951 GO:2000574 GO:2000576 GO:2000580 GO:2000582 GO:2001057
KEGG Pathways
Metabolic & Signaling
ko04962 map04962
Pfam Domains
Protein Families
Dynein_light

Protein Analysis

101

Amino Acids

11.06

Weight (kDa)

5.46

Isoelectric Point (pI)

38.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynein_light PF01221 6 - 89 8.1e-32 Dynein light chain type 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 162
AclWI GGATC 2 cut(s) 96, 190
AcsI RAATTY 1 cut(s) 187
AcuI CTGAAG 1 cut(s) 99
AgsI TTSAA 1 cut(s) 265
AluBI AGCT 5 cut(s) 71, 83, 122, 252, 300
AluI AGCT 5 cut(s) 71, 83, 122, 252, 300
Alw26I GTCTC 1 cut(s) 236
AlwI GGATC 2 cut(s) 96, 190
ApeKI GCWGC 3 cut(s) 68, 71, 122
ApoI RAATTY 1 cut(s) 187
AsuHPI GGTGA 1 cut(s) 55
BbvI GCAGC 3 cut(s) 58, 80, 109
BcoDI GTCTC 1 cut(s) 236
BfmI CTRYAG 2 cut(s) 109, 117
BglII AGATCT 1 cut(s) 113
BisI GCNGC 3 cut(s) 69, 72, 123
BlsI GCNGC 3 cut(s) 70, 73, 124
BmsI GCATC 3 cut(s) 39, 45, 149
BpuEI CTTGAG 1 cut(s) 260
BsaJI CCNNGG 1 cut(s) 63
Bse118I RCCGGY 1 cut(s) 40
Bse3DI GCAATG 1 cut(s) 176
BseDI CCNNGG 1 cut(s) 63
BseGI GGATG 1 cut(s) 164
BseMI GCAATG 1 cut(s) 176
BseMII CTCAG 1 cut(s) 262
BseRI GAGGAG 3 cut(s) 274, 277, 280
BseXI GCAGC 3 cut(s) 58, 80, 109
BsiSI CCGG 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 236
Bsp143I GATC 3 cut(s) 88, 113, 182
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 1 cut(s) 162
BspCNI CTCAG 1 cut(s) 261
BspMAI CTGCAG 1 cut(s) 113
BspPI GGATC 2 cut(s) 96, 190
BsrDI GCAATG 1 cut(s) 176
BsrFI RCCGGY 1 cut(s) 40
BssAI RCCGGY 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 3 cut(s) 88, 113, 182
BssT1I CCWWGG 1 cut(s) 63
Bst4CI ACNGT 1 cut(s) 212
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 1 cut(s) 248
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 1 cut(s) 164
BstKTI GATC 3 cut(s) 91, 116, 185
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 3 cut(s) 88, 113, 182
BstMWI GCNNNNNNNGC 2 cut(s) 68, 80
BstSFI CTRYAG 2 cut(s) 109, 117
BstV1I GCAGC 3 cut(s) 58, 80, 109
BstX2I RGATCY 2 cut(s) 88, 113
BstYI RGATCY 2 cut(s) 88, 113
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 1 cut(s) 164
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 2 cut(s) 24, 208
Cac8I GCNNGC 1 cut(s) 60
Cfr10I RCCGGY 1 cut(s) 40
CviAII CATG 2 cut(s) 64, 148
CviJI RGCY 6 cut(s) 62, 71, 83, 122, 252, 300
CviKI_1 RGCY 6 cut(s) 62, 71, 83, 122, 252, 300
DdeI CTNAG 1 cut(s) 248
DpnI GATC 3 cut(s) 90, 115, 184
DpnII GATC 3 cut(s) 88, 113, 182
Eco130I CCWWGG 1 cut(s) 63
Eco57I CTGAAG 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 2 cut(s) 67, 151
FaiI YATR 6 cut(s) 38, 65, 119, 131, 149, 156
FatI CATG 2 cut(s) 63, 147
Fnu4HI GCNGC 3 cut(s) 69, 72, 123
FokI GGATG 1 cut(s) 171
Fsp4HI GCNGC 3 cut(s) 69, 72, 123
GluI GCNGC 3 cut(s) 69, 72, 123
HapII CCGG 1 cut(s) 41
Hin1II CATG 2 cut(s) 67, 151
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HinfI GANTC 2 cut(s) 244, 272
HpaII CCGG 1 cut(s) 41
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 1 cut(s) 79
Hpy188III TCNNGA 2 cut(s) 86, 95
Hpy8I GTNNAC 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4V TGCA 3 cut(s) 52, 58, 111
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 80
HpyF3I CTNAG 1 cut(s) 248
Hsp92II CATG 2 cut(s) 67, 151
Kzo9I GATC 3 cut(s) 88, 113, 182
LpnPI CCDG 2 cut(s) 54, 71
Lsp1109I GCAGC 3 cut(s) 58, 80, 109
LweI GCATC 3 cut(s) 39, 45, 149
MalI GATC 3 cut(s) 90, 115, 184
MboI GATC 3 cut(s) 88, 113, 182
MboII GAAGA 5 cut(s) 58, 83, 253, 267, 270
MflI RGATCY 2 cut(s) 88, 113
MluCI AATT 1 cut(s) 187
MlyI GAGTC 1 cut(s) 238
MnlI CCTC 5 cut(s) 19, 292, 295, 298, 301
MslI CAYNNNNRTG 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 1 cut(s) 41
MwoI GCNNNNNNNGC 2 cut(s) 68, 80
NcoI CCATGG 1 cut(s) 63
NdeII GATC 3 cut(s) 88, 113, 182
NlaIII CATG 2 cut(s) 67, 151
PfeI GAWTC 1 cut(s) 272
PkrI GCNGC 3 cut(s) 70, 73, 124
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
PstI CTGCAG 1 cut(s) 113
PsuI RGATCY 2 cut(s) 88, 113
PvuII CAGCTG 1 cut(s) 71
RseI CAYNNNNRTG 1 cut(s) 35
SatI GCNGC 3 cut(s) 69, 72, 123
Sau3AI GATC 3 cut(s) 88, 113, 182
SchI GAGTC 1 cut(s) 238
SetI ASST 5 cut(s) 73, 85, 124, 254, 302
SfaNI GCATC 3 cut(s) 39, 45, 149
SfcI CTRYAG 2 cut(s) 109, 117
SgeI CNNG 7 cut(s) 53, 71, 76, 98, 107, 160, 251
SmiMI CAYNNNNRTG 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 1 cut(s) 187
SsiI CCGC 1 cut(s) 162
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 212
TasI AATT 1 cut(s) 187
TfiI GAWTC 1 cut(s) 272
TscAI CASTG 2 cut(s) 24, 215
TseI GCWGC 3 cut(s) 68, 71, 122
TspDTI ATGAA 1 cut(s) 214
TspRI CASTG 2 cut(s) 24, 215
XapI RAATTY 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.