Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006243.1

Orthogroup ID

OG0007847

Physical Location & Seq

Genomic Coordinates Forward (+)

41816 .. 42206

Gene Structure 391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006243.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

atgttggaaggcaaagctttgatacaagacacagacatgccagtgaagatgcagattcaagccacggcttctgcttctcaagctctggatctctatgatgtctttgattgcagatccatatctgcccacattaaaaaggagtttgataagagatatggatgtggttggcaatgtgtggtgggttccaattttgggtgcttcttcacacattccaaaggcactttcatctacttcactcttgaaactctcagtttccttatctttagaggggtttcttcttcttcttcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000775 GO:0000776 GO:0001505 GO:0002791 GO:0002793 GO:0003006 GO:0003674 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005868 GO:0005875 GO:0006807 GO:0006809 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0008092 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010646 GO:0010647 GO:0010817 GO:0010970 GO:0012505 GO:0015630 GO:0016043 GO:0017144 GO:0019899 GO:0019953 GO:0022412 GO:0022414 GO:0022607 GO:0023051 GO:0023056 GO:0030030 GO:0030031 GO:0030141 GO:0030154 GO:0030234 GO:0030235 GO:0030286 GO:0030424 GO:0030705 GO:0031410 GO:0031982 GO:0032024 GO:0032501 GO:0032502 GO:0032504 GO:0032781 GO:0032838 GO:0032879 GO:0032880 GO:0032991 GO:0033267 GO:0034641 GO:0035774 GO:0042133 GO:0042136 GO:0042802 GO:0042803 GO:0042995 GO:0043005 GO:0043085 GO:0043086 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043462 GO:0044085 GO:0044092 GO:0044093 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044703 GO:0044782 GO:0045505 GO:0046209 GO:0046883 GO:0046887 GO:0046907 GO:0046982 GO:0046983 GO:0048232 GO:0048468 GO:0048515 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048609 GO:0048856 GO:0048869 GO:0050708 GO:0050714 GO:0050789 GO:0050790 GO:0050794 GO:0050796 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051704 GO:0051959 GO:0060271 GO:0060341 GO:0061178 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0070925 GO:0071840 GO:0072593 GO:0072686 GO:0090087 GO:0090276 GO:0090277 GO:0097110 GO:0097458 GO:0097708 GO:0098687 GO:0098772 GO:0099111 GO:0099503 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:0120111 GO:1902494 GO:1903409 GO:1903530 GO:1903532 GO:1904115 GO:1904951 GO:2000574 GO:2000576 GO:2000580 GO:2000582 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

96

Amino Acids

10.71

Weight (kDa)

6.69

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52245
fragaria_vesca	FvH4_1g04420 FvH4_6g31660
malus_domestica	MD15G1182600.v1.1 MD17G1192300.v1.1
prunus_persica	Prupe.3G068100_v2.0.a1 Prupe.7G233000_v2.0.a1
pyrus_communis	pycom15g16500
rosa_chinensis	RchiOBHm_Chr2g0090071 RchiOBHm_Chr2g0138711
rosa_multiflora	Rmu_sc0000226.1_g000004 Rmu_sc0006243.1_g000010 Rmu_sc0007053.1_g000008
rosa_roxburghii	Rroxscaffold_2G00105990 Rroxscaffold_2G00151420
rosa_rugosa	Rorug02G0005100 Rorug02G0352500
rosa_samantha	Rh2BG049400 Rh2BG405600 Rh2CG051600 Rh2CG388200 Rh2DG051000
rosa_wichuraiana	Rw2G003980 Rw2G032680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	96, 108
AfiI	CCNNNNNNNGG	1 cut(s)	192
AgsI	TTSAA	2 cut(s)	59, 242
AjuI	GAANNNNNNNTTGG	2 cut(s)	206, 238
AluBI	AGCT	2 cut(s)	17, 83
AluI	AGCT	2 cut(s)	17, 83
AlwI	GGATC	2 cut(s)	96, 108
BceAI	ACGGC	1 cut(s)	81
BmiI	GGNNCC	1 cut(s)	184
BmsI	GCATC	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	63
BsaBI	GATNNNNATC	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
Bse1I	ACTGG	1 cut(s)	41
Bse3DI	GCAATG	1 cut(s)	176
Bse8I	GATNNNNATC	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	164
BseJI	GATNNNNATC	1 cut(s)	118
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseMI	GCAATG	1 cut(s)	176
BseMII	CTCAG	1 cut(s)	262
BseNI	ACTGG	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	192
Bsp143I	GATC	2 cut(s)	88, 113
BspCNI	CTCAG	1 cut(s)	261
BspLI	GGNNCC	1 cut(s)	184
BspPI	GGATC	2 cut(s)	96, 108
BsrDI	GCAATG	1 cut(s)	176
BsrI	ACTGG	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	2 cut(s)	88, 113
BstDEI	CTNAG	1 cut(s)	248
BstDSI	CCRYGG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	164
BstKTI	GATC	2 cut(s)	91, 116
BstMBI	GATC	2 cut(s)	88, 113
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNSI	RCATGY	1 cut(s)	40
BstX2I	RGATCY	2 cut(s)	88, 113
BstYI	RGATCY	2 cut(s)	88, 113
BtgI	CCRYGG	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	164
BtsIMutI	CAGTG	1 cut(s)	48
CviAII	CATG	1 cut(s)	37
CviJI	RGCY	4 cut(s)	17, 62, 68, 83
CviKI_1	RGCY	4 cut(s)	17, 62, 68, 83
DdeI	CTNAG	1 cut(s)	248
DpnI	GATC	2 cut(s)	90, 115
DpnII	GATC	2 cut(s)	88, 113
FaeI	CATG	1 cut(s)	40
FaiI	YATR	4 cut(s)	38, 96, 119, 156
FatI	CATG	1 cut(s)	36
FokI	GGATG	1 cut(s)	171
Hin1II	CATG	1 cut(s)	40
HindIII	AAGCTT	1 cut(s)	15
HinfI	GANTC	1 cut(s)	55
Hpy188III	TCNNGA	3 cut(s)	86, 239, 288
HpyCH4V	TGCA	2 cut(s)	52, 111
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	1 cut(s)	248
Hsp92II	CATG	1 cut(s)	40
Kzo9I	GATC	2 cut(s)	88, 113
LpnPI	CCDG	2 cut(s)	54, 71
LweI	GCATC	1 cut(s)	39
MalI	GATC	2 cut(s)	90, 115
MboI	GATC	2 cut(s)	88, 113
MboII	GAAGA	6 cut(s)	58, 193, 267, 270, 273, 276
MflI	RGATCY	2 cut(s)	88, 113
MluCI	AATT	1 cut(s)	187
MnlI	CCTC	1 cut(s)	260
MseI	TTAA	1 cut(s)	132
MslI	CAYNNNNRTG	2 cut(s)	35, 41
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	2 cut(s)	88, 113
NlaIII	CATG	1 cut(s)	40
NlaIV	GGNNCC	1 cut(s)	184
NspI	RCATGY	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	184
PsuI	RGATCY	2 cut(s)	88, 113
RseI	CAYNNNNRTG	2 cut(s)	35, 41
SaqAI	TTAA	1 cut(s)	132
Sau3AI	GATC	2 cut(s)	88, 113
SetI	ASST	2 cut(s)	19, 85
SfaNI	GCATC	1 cut(s)	39
SgeI	CNNG	8 cut(s)	38, 49, 53, 71, 76, 92, 98, 251
SmiMI	CAYNNNNRTG	2 cut(s)	35, 41
SmlI	CTYRAG	1 cut(s)	78
SmoI	CTYRAG	1 cut(s)	78
Sse9I	AATT	1 cut(s)	187
TasI	AATT	1 cut(s)	187
TfiI	GAWTC	1 cut(s)	55
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	1 cut(s)	48
TspDTI	ATGAA	1 cut(s)	214
TspRI	CASTG	1 cut(s)	48
XceI	RCATGY	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.