Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0007847

Physical Location & Seq

Genomic Coordinates Reverse (-)

2359572 .. 2359972

Gene Structure 401 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g04420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGTTGGAAGGTAAAGGAATGGTAAAGGAGACAGATATGGCTGATAAGAAGATGCAGATGCAAGCCATGGCTTGTGCTTCTGAAGCTCTTGATCTCCATGATGTTATTGATTGCATCTCTATTGCTGCCCACATCAAAAAGGAGTTTGATAAGATGTATGGGAGTGGGTGGCAATGTGTTGTGGGATCCAACTTTGGTTGCTTCTTCACACACACACCAGGGACTTTCATATATTTCTCTTTGGAGACCCTTAATTTCCTTATTTTCAAGGGAGCTTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0017016 GO:0017048 GO:0019899 GO:0021700 GO:0022622 GO:0030154 GO:0031267 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0051020 GO:0065007 GO:0065009 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0098772 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light PRONE

Protein Analysis

95

Amino Acids

10.42

Weight (kDa)

5.44

Isoelectric Point (pI)

19.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	7 - 90	4.5e-31	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52245
fragaria_vesca	FvH4_1g04420 FvH4_6g31660
malus_domestica	MD15G1182600.v1.1 MD17G1192300.v1.1
prunus_persica	Prupe.3G068100_v2.0.a1 Prupe.7G233000_v2.0.a1
pyrus_communis	pycom15g16500
rosa_chinensis	RchiOBHm_Chr2g0090071 RchiOBHm_Chr2g0138711
rosa_multiflora	Rmu_sc0000226.1_g000004 Rmu_sc0006243.1_g000010 Rmu_sc0007053.1_g000008
rosa_roxburghii	Rroxscaffold_2G00105990 Rroxscaffold_2G00151420
rosa_rugosa	Rorug02G0005100 Rorug02G0352500
rosa_samantha	Rh2BG049400 Rh2BG405600 Rh2CG051600 Rh2CG388200 Rh2DG051000
rosa_wichuraiana	Rw2G003980 Rw2G032680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	180, 193
AcuI	CTGAAG	1 cut(s)	102
AgsI	TTSAA	1 cut(s)	268
AjnI	CCWGG	1 cut(s)	217
AluBI	AGCT	2 cut(s)	86, 275
AluI	AGCT	2 cut(s)	86, 275
Alw26I	GTCTC	2 cut(s)	23, 239
AlwI	GGATC	2 cut(s)	180, 193
ApeKI	GCWGC	1 cut(s)	125
BamHI	GGATCC	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	112
BciT130I	CCWGG	1 cut(s)	219
BcoDI	GTCTC	2 cut(s)	23, 239
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme1390I	CCNGG	1 cut(s)	219
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	219
BmsI	GCATC	3 cut(s)	42, 48, 123
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	66, 218
Bse3DI	GCAATG	1 cut(s)	179
BseBI	CCWGG	1 cut(s)	219
BseDI	CCNNGG	2 cut(s)	66, 218
BseMI	GCAATG	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	112
BslFI	GGGAC	1 cut(s)	235
BsmAI	GTCTC	2 cut(s)	23, 239
BsmFI	GGGAC	1 cut(s)	235
Bso31I	GGTCTC	1 cut(s)	239
Bsp143I	GATC	2 cut(s)	91, 185
Bsp19I	CCATGG	1 cut(s)	66
BspLI	GGNNCC	1 cut(s)	187
BspPI	GGATC	2 cut(s)	180, 193
BspTNI	GGTCTC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	179
BssECI	CCNNGG	2 cut(s)	66, 218
BssMI	GATC	2 cut(s)	91, 185
BssT1I	CCWWGG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	63
BstDSI	CCRYGG	1 cut(s)	66
BstKTI	GATC	2 cut(s)	94, 188
BstMAI	GTCTC	2 cut(s)	23, 239
BstMBI	GATC	2 cut(s)	91, 185
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNI	CCWGG	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	217
BstV1I	GCAGC	1 cut(s)	112
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
BtgI	CCRYGG	1 cut(s)	66
Cac8I	GCNNGC	1 cut(s)	63
CviAII	CATG	2 cut(s)	67, 98
CviJI	RGCY	5 cut(s)	41, 65, 71, 86, 275
CviKI_1	RGCY	5 cut(s)	41, 65, 71, 86, 275
DpnI	GATC	2 cut(s)	93, 187
DpnII	GATC	2 cut(s)	91, 185
Eco130I	CCWWGG	1 cut(s)	66
Eco31I	GGTCTC	1 cut(s)	239
Eco57I	CTGAAG	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	2 cut(s)	70, 101
FaiI	YATR	6 cut(s)	38, 68, 99, 159, 230, 232
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	2 cut(s)	66, 97
Fnu4HI	GCNGC	1 cut(s)	126
Fsp4HI	GCNGC	1 cut(s)	126
GluI	GCNGC	1 cut(s)	126
Hin1II	CATG	2 cut(s)	70, 101
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	2 cut(s)	89, 282
HpyCH4V	TGCA	3 cut(s)	55, 61, 114
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
Hsp92II	CATG	2 cut(s)	70, 101
Kzo9I	GATC	2 cut(s)	91, 185
LmnI	GCTCC	1 cut(s)	272
LpnPI	CCDG	2 cut(s)	204, 231
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	3 cut(s)	42, 48, 123
MalI	GATC	2 cut(s)	93, 187
MboI	GATC	2 cut(s)	91, 185
MboII	GAAGA	3 cut(s)	61, 196, 270
MflI	RGATCY	1 cut(s)	185
MluCI	AATT	1 cut(s)	253
MmeI	TCCRAC	1 cut(s)	213
MseI	TTAA	1 cut(s)	252
MspR9I	CCNGG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	66
NdeII	GATC	2 cut(s)	91, 185
NlaIII	CATG	2 cut(s)	70, 101
NlaIV	GGNNCC	1 cut(s)	187
PkrI	GCNGC	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	2 cut(s)	91, 185
ScrFI	CCNGG	1 cut(s)	219
SetI	ASST	3 cut(s)	13, 88, 277
SfaNI	GCATC	3 cut(s)	42, 48, 123
SgeI	CNNG	8 cut(s)	74, 79, 84, 101, 110, 230, 231, 280
Sse9I	AATT	1 cut(s)	253
StyD4I	CCNGG	1 cut(s)	217
StyI	CCWWGG	1 cut(s)	66
TasI	AATT	1 cut(s)	253
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TseI	GCWGC	1 cut(s)	125
TspDTI	ATGAA	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.