Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007847

Physical Location & Seq

Genomic Coordinates Forward (+)

88668103 .. 88668997

Gene Structure 895 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00151420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTGGGATTTTGAAGAGAGAGAGAGAGAGAGAGAGATCAAAGTGGGAAAGATGTTGGAAGGAAAAGGAATGATAAAGGAGACAGATATGGCAGATAAGAAGATGCAGATGCAAGCCATGGCTTGTGCTTCTGAAGCTCTTGATCTGCATGATGTTATTGATTGCATCTCTATTGCTGCCCACATCAAAAAGGAGTTTGACAAGATGTATGGGAGTGGATGGCAATGTGTTGTGGGTTCTAACTTTGGTTGCTTCTTCACCCACACACCAGGGACTTTCATATATTTCTCTTTGGAGACCCTTAATTTCCTTATTTTCAAGGGAGCTTCTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0017016 GO:0017048 GO:0019899 GO:0021700 GO:0022622 GO:0030154 GO:0031267 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0051020 GO:0065007 GO:0065009 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0098772 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light PRONE

Protein Analysis

111

Amino Acids

12.66

Weight (kDa)

5.32

Isoelectric Point (pI)

19.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	24 - 107	5.8e-31	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52245
fragaria_vesca	FvH4_1g04420 FvH4_6g31660
malus_domestica	MD15G1182600.v1.1 MD17G1192300.v1.1
prunus_persica	Prupe.3G068100_v2.0.a1 Prupe.7G233000_v2.0.a1
pyrus_communis	pycom15g16500
rosa_chinensis	RchiOBHm_Chr2g0090071 RchiOBHm_Chr2g0138711
rosa_multiflora	Rmu_sc0000226.1_g000004 Rmu_sc0006243.1_g000010 Rmu_sc0007053.1_g000008
rosa_roxburghii	Rroxscaffold_2G00105990 Rroxscaffold_2G00151420
rosa_rugosa	Rorug02G0005100 Rorug02G0352500
rosa_samantha	Rh2BG049400 Rh2BG405600 Rh2CG051600 Rh2CG388200 Rh2DG051000
rosa_wichuraiana	Rw2G003980 Rw2G032680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	153
AgsI	TTSAA	2 cut(s)	14, 319
AjnI	CCWGG	1 cut(s)	268
AluBI	AGCT	2 cut(s)	137, 326
AluI	AGCT	2 cut(s)	137, 326
Alw26I	GTCTC	2 cut(s)	74, 290
ApeKI	GCWGC	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	250
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	1 cut(s)	213
BciT130I	CCWGG	1 cut(s)	270
BcoDI	GTCTC	2 cut(s)	74, 290
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bme1390I	CCNGG	1 cut(s)	270
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	3 cut(s)	93, 99, 174
BsaI	GGTCTC	1 cut(s)	290
BsaJI	CCNNGG	2 cut(s)	117, 269
Bse3DI	GCAATG	1 cut(s)	230
BseBI	CCWGG	1 cut(s)	270
BseDI	CCNNGG	2 cut(s)	117, 269
BseGI	GGATG	1 cut(s)	224
BseMI	GCAATG	1 cut(s)	230
BseXI	GCAGC	1 cut(s)	163
BslFI	GGGAC	1 cut(s)	286
BsmAI	GTCTC	2 cut(s)	74, 290
BsmFI	GGGAC	1 cut(s)	286
Bso31I	GGTCTC	1 cut(s)	290
Bsp143I	GATC	2 cut(s)	36, 142
Bsp19I	CCATGG	1 cut(s)	117
BspTNI	GGTCTC	1 cut(s)	290
BsrDI	GCAATG	1 cut(s)	230
BssECI	CCNNGG	2 cut(s)	117, 269
BssMI	GATC	2 cut(s)	36, 142
BssT1I	CCWWGG	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	270
Bst6I	CTCTTC	1 cut(s)	9
BstC8I	GCNNGC	1 cut(s)	114
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	1 cut(s)	224
BstKTI	GATC	2 cut(s)	39, 145
BstMAI	GTCTC	2 cut(s)	74, 290
BstMBI	GATC	2 cut(s)	36, 142
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNI	CCWGG	1 cut(s)	270
BstSCI	CCNGG	1 cut(s)	268
BstV1I	GCAGC	1 cut(s)	163
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	224
Cac8I	GCNNGC	1 cut(s)	114
CviAII	CATG	2 cut(s)	118, 149
CviJI	RGCY	4 cut(s)	116, 122, 137, 326
CviKI_1	RGCY	4 cut(s)	116, 122, 137, 326
DpnI	GATC	2 cut(s)	38, 144
DpnII	GATC	2 cut(s)	36, 142
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	117
Eco31I	GGTCTC	1 cut(s)	290
Eco57I	CTGAAG	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	268
EcoT14I	CCWWGG	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	2 cut(s)	121, 152
FaiI	YATR	6 cut(s)	89, 119, 150, 210, 281, 283
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	2 cut(s)	117, 148
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	177
GluI	GCNGC	1 cut(s)	177
Hin1II	CATG	2 cut(s)	121, 152
HphI	GGTGA	1 cut(s)	250
Hpy188I	TCNGA	1 cut(s)	133
Hpy188III	TCNNGA	1 cut(s)	140
HpyAV	CCTTC	1 cut(s)	53
HpyCH4V	TGCA	4 cut(s)	106, 112, 148, 165
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
Hsp92II	CATG	2 cut(s)	121, 152
Kzo9I	GATC	2 cut(s)	36, 142
LmnI	GCTCC	1 cut(s)	323
LpnPI	CCDG	2 cut(s)	255, 282
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	3 cut(s)	93, 99, 174
MalI	GATC	2 cut(s)	38, 144
MboI	GATC	2 cut(s)	36, 142
MboII	GAAGA	3 cut(s)	26, 112, 247
MluCI	AATT	1 cut(s)	304
MmeI	TCCRAC	1 cut(s)	36
MseI	TTAA	1 cut(s)	303
MspR9I	CCNGG	1 cut(s)	270
MvaI	CCWGG	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	134
NcoI	CCATGG	1 cut(s)	117
NdeII	GATC	2 cut(s)	36, 142
NlaIII	CATG	2 cut(s)	121, 152
PkrI	GCNGC	1 cut(s)	178
Psp6I	CCWGG	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	268
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	2 cut(s)	36, 142
ScrFI	CCNGG	1 cut(s)	270
SetI	ASST	2 cut(s)	139, 328
SfaNI	GCATC	3 cut(s)	93, 99, 174
SgeI	CNNG	9 cut(s)	125, 130, 135, 152, 161, 214, 281, 282, 331
Sse9I	AATT	1 cut(s)	304
StyD4I	CCNGG	1 cut(s)	268
StyI	CCWWGG	1 cut(s)	117
TasI	AATT	1 cut(s)	304
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TseI	GCWGC	1 cut(s)	176
TspDTI	ATGAA	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.