Rroxscaffold_2G00105990

Dynein light chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0007847
Physical Location & Seq
Forward (+)
29533226 .. 29533925
700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00105990.1

Sequence Viewer

Length: 327 bp
ATGTTGGAAGGCAAAGCTTTGATACAAGACACAGACATGCCAGTGAAGATGCAGATTCAAGCCACTGCTTCTGCTTCTCAAGCTCTGGATCTCTATGATGTCTTTGATTGCAGATCCATATCTGCCCACATTAAAAAGGTACAATCGAGTTTGATAAGAGATATGGATGTGGTTGGCAATGTGTGGTGGGTTCCAATTTTGGGTGCTTCTTCACTCATTCCAAAGGCACTTTCATCTACTTCACTCTTGAAACTCTCAGTTTCCTTATCTTTAGAGGTGTTTCTTCTTCTTCTTCTTCCTGATCTTAGTCAAGACATGGTTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000775 GO:0000776 GO:0001505 GO:0002791 GO:0002793 GO:0003006 GO:0003674 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005868 GO:0005875 GO:0006807 GO:0006809 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0008092 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010646 GO:0010647 GO:0010817 GO:0010970 GO:0012505 GO:0015630 GO:0016043 GO:0017144 GO:0019899 GO:0019953 GO:0022412 GO:0022414 GO:0022607 GO:0023051 GO:0023056 GO:0030030 GO:0030031 GO:0030141 GO:0030154 GO:0030234 GO:0030235 GO:0030286 GO:0030424 GO:0030705 GO:0031410 GO:0031982 GO:0032024 GO:0032501 GO:0032502 GO:0032504 GO:0032781 GO:0032838 GO:0032879 GO:0032880 GO:0032991 GO:0033267 GO:0034641 GO:0035774 GO:0042133 GO:0042136 GO:0042802 GO:0042803 GO:0042995 GO:0043005 GO:0043085 GO:0043086 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043462 GO:0044085 GO:0044092 GO:0044093 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044703 GO:0044782 GO:0045505 GO:0046209 GO:0046883 GO:0046887 GO:0046907 GO:0046982 GO:0046983 GO:0048232 GO:0048468 GO:0048515 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048609 GO:0048856 GO:0048869 GO:0050708 GO:0050714 GO:0050789 GO:0050790 GO:0050794 GO:0050796 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051704 GO:0051959 GO:0060271 GO:0060341 GO:0061178 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0070925 GO:0071840 GO:0072593 GO:0072686 GO:0090087 GO:0090276 GO:0090277 GO:0097110 GO:0097458 GO:0097708 GO:0098687 GO:0098772 GO:0099111 GO:0099503 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:0120111 GO:1902494 GO:1903409 GO:1903530 GO:1903532 GO:1904115 GO:1904951 GO:2000574 GO:2000576 GO:2000580 GO:2000582 GO:2001057
KEGG Pathways
Metabolic & Signaling
ko04962 map04962
Pfam Domains
Protein Families
Dynein_light

Protein Analysis

108

Amino Acids

11.86

Weight (kDa)

4.79

Isoelectric Point (pI)

40.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynein_light PF01221 5 - 46 7.8e-06 Dynein light chain type 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 96, 108
AfaI GTAC 1 cut(s) 141
AfiI CCNNNNNNNGG 1 cut(s) 200
AgsI TTSAA 2 cut(s) 59, 250
AjuI GAANNNNNNNTTGG 2 cut(s) 214, 246
AluBI AGCT 2 cut(s) 17, 83
AluI AGCT 2 cut(s) 17, 83
AlwI GGATC 2 cut(s) 96, 108
BmiI GGNNCC 1 cut(s) 192
BmsI GCATC 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 63
BsaBI GATNNNNATC 1 cut(s) 118
Bsc4I CCNNNNNNNGG 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 41
Bse3DI GCAATG 1 cut(s) 184
Bse8I GATNNNNATC 1 cut(s) 118
BseGI GGATG 1 cut(s) 172
BseJI GATNNNNATC 1 cut(s) 118
BseLI CCNNNNNNNGG 1 cut(s) 200
BseMI GCAATG 1 cut(s) 184
BseMII CTCAG 1 cut(s) 270
BseNI ACTGG 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 200
Bsp143I GATC 3 cut(s) 88, 113, 301
BspCNI CTCAG 1 cut(s) 269
BspLI GGNNCC 1 cut(s) 192
BspPI GGATC 2 cut(s) 96, 108
BsrDI GCAATG 1 cut(s) 184
BsrI ACTGG 1 cut(s) 41
BssMI GATC 3 cut(s) 88, 113, 301
BstDEI CTNAG 2 cut(s) 256, 305
BstF5I GGATG 1 cut(s) 172
BstKTI GATC 3 cut(s) 91, 116, 304
BstMBI GATC 3 cut(s) 88, 113, 301
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNSI RCATGY 1 cut(s) 40
BstX2I RGATCY 2 cut(s) 88, 113
BstYI RGATCY 2 cut(s) 88, 113
BtsCI GGATG 1 cut(s) 172
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 2 cut(s) 48, 63
Csp6I GTAC 1 cut(s) 140
CviAII CATG 2 cut(s) 37, 316
CviJI RGCY 3 cut(s) 17, 62, 83
CviKI_1 RGCY 3 cut(s) 17, 62, 83
CviQI GTAC 1 cut(s) 140
DdeI CTNAG 2 cut(s) 256, 305
DpnI GATC 3 cut(s) 90, 115, 303
DpnII GATC 3 cut(s) 88, 113, 301
FaeI CATG 2 cut(s) 40, 319
FaiI YATR 5 cut(s) 38, 96, 119, 164, 317
FatI CATG 2 cut(s) 36, 315
FokI GGATG 1 cut(s) 179
Hin1II CATG 2 cut(s) 40, 319
HindIII AAGCTT 1 cut(s) 15
HinfI GANTC 1 cut(s) 55
Hpy188III TCNNGA 4 cut(s) 86, 247, 299, 311
HpyCH4V TGCA 2 cut(s) 52, 111
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 2 cut(s) 256, 305
Hsp92II CATG 2 cut(s) 40, 319
Kzo9I GATC 3 cut(s) 88, 113, 301
LpnPI CCDG 3 cut(s) 54, 71, 312
LweI GCATC 1 cut(s) 39
MalI GATC 3 cut(s) 90, 115, 303
MboI GATC 3 cut(s) 88, 113, 301
MboII GAAGA 7 cut(s) 58, 201, 275, 278, 281, 284, 287
MflI RGATCY 2 cut(s) 88, 113
MluCI AATT 1 cut(s) 195
MnlI CCTC 1 cut(s) 268
MseI TTAA 1 cut(s) 132
MslI CAYNNNNRTG 2 cut(s) 35, 41
MwoI GCNNNNNNNGC 1 cut(s) 80
NdeII GATC 3 cut(s) 88, 113, 301
NlaIII CATG 2 cut(s) 40, 319
NlaIV GGNNCC 1 cut(s) 192
NspI RCATGY 1 cut(s) 40
PfeI GAWTC 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 192
PsuI RGATCY 2 cut(s) 88, 113
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
RseI CAYNNNNRTG 2 cut(s) 35, 41
SaqAI TTAA 1 cut(s) 132
Sau3AI GATC 3 cut(s) 88, 113, 301
SetI ASST 4 cut(s) 19, 85, 141, 279
SfaNI GCATC 1 cut(s) 39
SmiMI CAYNNNNRTG 2 cut(s) 35, 41
SmlI CTYRAG 1 cut(s) 78
SmoI CTYRAG 1 cut(s) 78
Sse9I AATT 1 cut(s) 195
TaqI TCGA 1 cut(s) 146
TasI AATT 1 cut(s) 195
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 2 cut(s) 48, 70
TspDTI ATGAA 1 cut(s) 222
TspRI CASTG 2 cut(s) 48, 70
XceI RCATGY 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.