AT1G52590

Protein of unknown function, DUF393

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014125
Physical Location & Seq
Reverse (-)
19589009 .. 19590281
1273 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G52590.1

Sequence Viewer

Length: 519 bp
ATGGCGATCCTTATTCCGGCGAGTTTCGGGCGATTAACAATTACGTCGCGTGCACAAGTTAGAGTGAGAGTTTCTGCTTCTGCTAACCAACGCACTATTCGTCGCGATTCAGTGGATTGGGTTAAGGAAACTTCAAGCTTTTTCGAAGAAGATAAAAGGCCGATCATGTTGTTCGACGGTGTTTGTAATCTCTGTAATGGAGGTGTGAAATTTGTTAGAGACCATGATCGAAACAGGAGCATAAGGTTTGAAGCATTACAGAGTGAAGCGGGCAAGAAACTGTTATTGCGGTCAGGAAGAGCTCCTGACGATATATCGAGTGTCGTACTAGTCGAAAACGATAGGTCTTACATAAAGTCAGAAGCAGTTTTGAAGATCATGAAATACATTGACTTACCATTTCCACAGCTTGCGTTCTTCTTGCAGTTTGCTCCTCTGTTTGTGAGAGACTTTTTGTATGAAAATGTTGCAAACAATCGATATGCAATGTTTGGTCGATCTGATTCATGTGAGCTCTAA

Protein Analysis

172

Amino Acids

19.71

Weight (kDa)

9.3

Isoelectric Point (pI)

50.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DCC1-like PF04134 57 - 166 2.5e-27 DCC1-like thiol-disulfide oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52590
fragaria_vesca FvH4_6g30000
malus_domestica MD00G1022200.v1.1
prunus_persica Prupe.3G083500_v2.0.a1 Prupe.3G083500_v2.0.a1 Prupe.3G083500_v2.0.a1
pyrus_communis pycom17g21400
rosa_chinensis RchiOBHm_Chr2g0136021
rosa_laevigata RLG00000019497
rosa_multiflora Rmu_ssc0000343.1_g000029
rosa_roxburghii Rroxscaffold_2G00108690
rosa_rugosa Rorug02G0327700.1
rosa_samantha Rh2AG379400 Rh2BG385800 Rh2CG365000 Rh2DG402200
rosa_wichuraiana Rw2G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 49, 105
AciI CCGC 2 cut(s) 269, 289
AcsI RAATTY 1 cut(s) 209
AfaI GTAC 1 cut(s) 327
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 3 cut(s) 135, 251, 373
AhlI ACTAGT 1 cut(s) 328
AjuI GAANNNNNNNTTGG 2 cut(s) 81, 113
AluBI AGCT 4 cut(s) 138, 302, 409, 514
AluI AGCT 4 cut(s) 138, 302, 409, 514
Alw21I GWGCWC 3 cut(s) 55, 304, 516
Alw26I GTCTC 2 cut(s) 213, 441
Alw44I GTGCAC 1 cut(s) 51
AoxI GGCC 1 cut(s) 158
ApaLI GTGCAC 1 cut(s) 51
ApoI RAATTY 1 cut(s) 209
AsuII TTCGAA 1 cut(s) 144
BaeGI GKGCMC 1 cut(s) 55
BanII GRGCYC 2 cut(s) 304, 516
Bbv12I GWGCWC 3 cut(s) 55, 304, 516
BcoDI GTCTC 2 cut(s) 213, 441
BcuI ACTAGT 1 cut(s) 328
BfaI CTAG 1 cut(s) 329
Bpu14I TTCGAA 1 cut(s) 144
Bsa29I ATCGAT 1 cut(s) 478
BsaI GGTCTC 1 cut(s) 213
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse3DI GCAATG 1 cut(s) 492
BseCI ATCGAT 1 cut(s) 478
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMI GCAATG 1 cut(s) 492
BseRI GAGGAG 1 cut(s) 423
BseSI GKGCMC 1 cut(s) 55
Bsh1236I CGCG 2 cut(s) 49, 105
BshFI GGCC 1 cut(s) 160
BshVI ATCGAT 1 cut(s) 478
BsiHKAI GWGCWC 3 cut(s) 55, 304, 516
BsiSI CCGG 1 cut(s) 17
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 2 cut(s) 213, 441
BsnI GGCC 1 cut(s) 160
Bso31I GGTCTC 1 cut(s) 213
Bsp119I TTCGAA 1 cut(s) 144
Bsp1286I GDGCHC 3 cut(s) 55, 304, 516
Bsp143I GATC 5 cut(s) 6, 162, 226, 375, 497
Bsp68I TCGCGA 1 cut(s) 105
BspACI CCGC 2 cut(s) 269, 289
BspANI GGCC 1 cut(s) 160
BspDI ATCGAT 1 cut(s) 478
BspFNI CGCG 2 cut(s) 49, 105
BspHI TCATGA 1 cut(s) 378
BspQI GCTCTTC 1 cut(s) 292
BspT104I TTCGAA 1 cut(s) 144
BspTNI GGTCTC 1 cut(s) 213
BsrDI GCAATG 1 cut(s) 492
BssMI GATC 5 cut(s) 6, 162, 226, 375, 497
Bst4CI ACNGT 2 cut(s) 179, 282
Bst6I CTCTTC 1 cut(s) 292
BstBI TTCGAA 1 cut(s) 144
BstC8I GCNNGC 3 cut(s) 51, 271, 411
BstFNI CGCG 2 cut(s) 49, 105
BstKTI GATC 5 cut(s) 9, 165, 229, 378, 500
BstMAI GTCTC 2 cut(s) 213, 441
BstMBI GATC 5 cut(s) 6, 162, 226, 375, 497
BstSLI GKGCMC 1 cut(s) 55
BstUI CGCG 2 cut(s) 49, 105
Bsu15I ATCGAT 1 cut(s) 478
BsuRI GGCC 1 cut(s) 160
BsuTUI ATCGAT 1 cut(s) 478
BtsIMutI CAGTG 1 cut(s) 117
BtuMI TCGCGA 1 cut(s) 105
Cac8I GCNNGC 3 cut(s) 51, 271, 411
CciI TCATGA 1 cut(s) 378
ClaI ATCGAT 1 cut(s) 478
Csp6I GTAC 1 cut(s) 326
CviAII CATG 4 cut(s) 166, 224, 379, 507
CviJI RGCY 5 cut(s) 138, 160, 302, 409, 514
CviKI_1 RGCY 5 cut(s) 138, 160, 302, 409, 514
CviQI GTAC 1 cut(s) 326
DpnI GATC 5 cut(s) 8, 164, 228, 377, 499
DpnII GATC 5 cut(s) 6, 162, 226, 375, 497
Eam1104I CTCTTC 1 cut(s) 292
EarI CTCTTC 1 cut(s) 292
Ecl136II GAGCTC 2 cut(s) 302, 514
Eco24I GRGCYC 2 cut(s) 304, 516
Eco31I GGTCTC 1 cut(s) 213
Eco53kI GAGCTC 2 cut(s) 302, 514
EcoICRI GAGCTC 2 cut(s) 302, 514
EcoT38I GRGCYC 2 cut(s) 304, 516
FaeI CATG 4 cut(s) 169, 227, 382, 510
FaiI YATR 9 cut(s) 167, 225, 242, 314, 353, 380, 459, 483, 508
FatI CATG 4 cut(s) 165, 223, 378, 506
FauI CCCGC 1 cut(s) 262
FriOI GRGCYC 2 cut(s) 304, 516
FspBI CTAG 1 cut(s) 329
HaeIII GGCC 1 cut(s) 160
HapII CCGG 1 cut(s) 17
Hin1II CATG 4 cut(s) 169, 227, 382, 510
HindIII AAGCTT 1 cut(s) 136
HinfI GANTC 2 cut(s) 107, 503
HpaII CCGG 1 cut(s) 17
Hpy166II GTNNAC 1 cut(s) 53
Hpy188I TCNGA 2 cut(s) 361, 502
Hpy188III TCNNGA 4 cut(s) 104, 294, 305, 379
Hpy8I GTNNAC 1 cut(s) 53
Hpy99I CGWCG 3 cut(s) 49, 105, 179
HpyCH4III ACNGT 2 cut(s) 179, 282
HpyCH4IV ACGT 1 cut(s) 44
HpyCH4V TGCA 4 cut(s) 53, 424, 470, 485
HpySE526I ACGT 1 cut(s) 44
Hsp92II CATG 4 cut(s) 169, 227, 382, 510
Kzo9I GATC 5 cut(s) 6, 162, 226, 375, 497
LguI GCTCTTC 1 cut(s) 292
LmnI GCTCC 3 cut(s) 237, 307, 436
LpnPI CCDG 4 cut(s) 30, 220, 279, 318
MaeI CTAG 1 cut(s) 329
MaeII ACGT 1 cut(s) 44
MalI GATC 5 cut(s) 8, 164, 228, 377, 499
MboI GATC 5 cut(s) 6, 162, 226, 375, 497
MboII GAAGA 5 cut(s) 158, 161, 309, 385, 409
MhlI GDGCHC 3 cut(s) 55, 304, 516
MluCI AATT 2 cut(s) 39, 209
MnlI CCTC 2 cut(s) 194, 444
MseI TTAA 2 cut(s) 35, 123
MspI CCGG 1 cut(s) 17
MvnI CGCG 2 cut(s) 49, 105
NdeII GATC 5 cut(s) 6, 162, 226, 375, 497
NlaIII CATG 4 cut(s) 169, 227, 382, 510
NruI TCGCGA 1 cut(s) 105
NspV TTCGAA 1 cut(s) 144
PagI TCATGA 1 cut(s) 378
PciSI GCTCTTC 1 cut(s) 292
PcsI WCGNNNNNNNCGW 2 cut(s) 97, 330
PfeI GAWTC 2 cut(s) 107, 503
Psp124BI GAGCTC 2 cut(s) 304, 516
RruI TCGCGA 1 cut(s) 105
RsaI GTAC 1 cut(s) 327
RsaNI GTAC 1 cut(s) 326
SacI GAGCTC 2 cut(s) 304, 516
SapI GCTCTTC 1 cut(s) 292
SaqAI TTAA 2 cut(s) 35, 123
Sau3AI GATC 5 cut(s) 6, 162, 226, 375, 497
SduI GDGCHC 3 cut(s) 55, 304, 516
SetI ASST 8 cut(s) 47, 140, 205, 248, 304, 347, 411, 516
SfuI TTCGAA 1 cut(s) 144
SpeI ACTAGT 1 cut(s) 328
Sse9I AATT 2 cut(s) 39, 209
SsiI CCGC 2 cut(s) 269, 289
SspMI CTAG 1 cut(s) 329
SstI GAGCTC 2 cut(s) 304, 516
TaaI ACNGT 2 cut(s) 179, 282
TaiI ACGT 1 cut(s) 47
TaqI TCGA 7 cut(s) 144, 174, 229, 317, 333, 478, 496
TasI AATT 2 cut(s) 39, 209
TfiI GAWTC 2 cut(s) 107, 503
Tru1I TTAA 2 cut(s) 35, 123
Tru9I TTAA 2 cut(s) 35, 123
TscAI CASTG 1 cut(s) 117
TspDTI ATGAA 3 cut(s) 395, 474, 495
TspRI CASTG 1 cut(s) 117
VneI GTGCAC 1 cut(s) 51
XapI RAATTY 1 cut(s) 209
XspI CTAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.