Prupe.3G083500_v2.0.a1

DCC family protein At1g52590

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0014125
Physical Location & Seq
Forward (+)
6180902 .. 6183344
2443 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G083500.1

Sequence Viewer

Length: 519 bp
ATGGCGCTTCTGGTTCCTGGTGGGTGCGTACGAGTAGGCTTTTCACGACCGGCGCACGTTAGACGAAGGCTAACTACGTTTGCTACCGTATCCCCAACCCGAGGAGATAGAGTGGACTGGGTCGAAGCAACTTCAGGCTTCTTTGAAAATGACACGAGGCCCATCATGTTATTTGACGGTGTTTGTAACTTATGTAATGGAGGTGTGAAGTTCGTGCGTGATAATGATCAAAATAGGAGAATAAGGTTTGAAGCTCTCCAGAGTGAAGCAGGGAAGAAACTGCTAAGAAGGTCCGGAAGAGCTCCGGATGATATTTCAAGTGTTGTTCTTGTTGAACAGGATAGATCCTTCATCAAGTCAGAAGCTGTTGTGAAGATAATGGAATACATAGACTTACCCTTCCCCCAGCTAGCATTCTTTCTACAGTTTGTACCTCTTTTCATACGGGATTTTCTATATGACAATGTTGCAAACAACCGTTACACAATTTTTGGTCGCTCAGACGCATGTGAGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF393

Protein Analysis

173

Amino Acids

19.59

Weight (kDa)

8.79

Isoelectric Point (pI)

55.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52590
fragaria_vesca FvH4_6g30000
malus_domestica MD00G1022200.v1.1
prunus_persica Prupe.3G083500_v2.0.a1 Prupe.3G083500_v2.0.a1 Prupe.3G083500_v2.0.a1
pyrus_communis pycom17g21400
rosa_chinensis RchiOBHm_Chr2g0136021
rosa_laevigata RLG00000019497
rosa_multiflora Rmu_ssc0000343.1_g000029
rosa_roxburghii Rroxscaffold_2G00108690
rosa_rugosa Rorug02G0327700.1
rosa_samantha Rh2AG379400 Rh2BG385800 Rh2CG365000 Rh2DG402200
rosa_wichuraiana Rw2G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 293, 304
AclWI GGATC 1 cut(s) 339
AcuI CTGAAG 1 cut(s) 117
AfaI GTAC 2 cut(s) 30, 432
AfiI CCNNNNNNNGG 1 cut(s) 101
AgsI TTSAA 4 cut(s) 146, 251, 318, 335
AjnI CCWGG 1 cut(s) 16
AluBI AGCT 5 cut(s) 254, 302, 365, 409, 514
AluI AGCT 5 cut(s) 254, 302, 365, 409, 514
Alw21I GWGCWC 1 cut(s) 304
AlwI GGATC 1 cut(s) 339
AlwNI CAGNNNCTG 1 cut(s) 365
Ama87I CYCGRG 1 cut(s) 99
Aor13HI TCCGGA 2 cut(s) 293, 304
AoxI GGCC 1 cut(s) 158
AspLEI GCGC 2 cut(s) 7, 55
AspS9I GGNCC 2 cut(s) 159, 291
AsuNHI GCTAGC 1 cut(s) 409
AvaI CYCGRG 1 cut(s) 99
AvaII GGWCC 1 cut(s) 291
BanII GRGCYC 1 cut(s) 304
BarI GAAGNNNNNNTAC 2 cut(s) 58, 90
BauI CACGAG 1 cut(s) 154
Bbv12I GWGCWC 1 cut(s) 304
BccI CCATC 1 cut(s) 170
BciT130I CCWGG 1 cut(s) 18
BciVI GTATCC 1 cut(s) 100
BclI TGATCA 1 cut(s) 226
BfaI CTAG 1 cut(s) 410
BfmI CTRYAG 2 cut(s) 422, 515
BfoI RGCGCY 1 cut(s) 8
BfuI GTATCC 1 cut(s) 100
Bme1390I CCNGG 1 cut(s) 18
Bme18I GGWCC 1 cut(s) 291
BmeT110I CYCGRG 1 cut(s) 99
BmgT120I GGNCC 2 cut(s) 159, 291
BmiI GGNNCC 1 cut(s) 15
BmrFI CCNGG 1 cut(s) 18
BmrI ACTGGG 1 cut(s) 127
BmtI GCTAGC 1 cut(s) 413
BmuI ACTGGG 1 cut(s) 127
BpmI CTGGAG 1 cut(s) 242
BsaBI GATNNNNATC 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 100
BsaWI WCCGGW 2 cut(s) 293, 304
BsaXI ACNNNNNCTCC 2 cut(s) 96, 126
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse118I RCCGGY 1 cut(s) 49
Bse1I ACTGG 1 cut(s) 122
Bse8I GATNNNNATC 1 cut(s) 225
BseAI TCCGGA 2 cut(s) 293, 304
BseBI CCWGG 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 1 cut(s) 313
BseJI GATNNNNATC 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 101
BseMII CTCAG 1 cut(s) 513
BseNI ACTGG 1 cut(s) 122
BseRI GAGGAG 1 cut(s) 117
BseYI CCCAGC 1 cut(s) 405
Bsh1285I CGRYCG 1 cut(s) 50
BshFI GGCC 1 cut(s) 160
BsiEI CGRYCG 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 304
BsiHKCI CYCGRG 1 cut(s) 99
BsiSI CCGG 3 cut(s) 50, 294, 305
BsiWI CGTACG 1 cut(s) 28
BslI CCNNNNNNNGG 1 cut(s) 101
BsmI GAATGC 1 cut(s) 413
BsnI GGCC 1 cut(s) 160
BsoBI CYCGRG 1 cut(s) 99
Bsp1286I GDGCHC 1 cut(s) 304
Bsp13I TCCGGA 2 cut(s) 293, 304
Bsp143I GATC 2 cut(s) 226, 344
BspANI GGCC 1 cut(s) 160
BspCNI CTCAG 1 cut(s) 512
BspEI TCCGGA 2 cut(s) 293, 304
BspLI GGNNCC 1 cut(s) 15
BspOI GCTAGC 1 cut(s) 413
BspPI GGATC 1 cut(s) 339
BspQI GCTCTTC 1 cut(s) 292
BsrFI RCCGGY 1 cut(s) 49
BsrI ACTGG 1 cut(s) 122
BssAI RCCGGY 1 cut(s) 49
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 2 cut(s) 226, 344
BssSI CACGAG 1 cut(s) 154
Bst2BI CACGAG 1 cut(s) 154
Bst2UI CCWGG 1 cut(s) 18
Bst4CI ACNGT 4 cut(s) 88, 179, 426, 479
Bst6I CTCTTC 1 cut(s) 292
BstC8I GCNNGC 1 cut(s) 411
BstDEI CTNAG 2 cut(s) 284, 499
BstF5I GGATG 1 cut(s) 313
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 55
BstKTI GATC 2 cut(s) 229, 347
BstMBI GATC 2 cut(s) 226, 344
BstMCI CGRYCG 1 cut(s) 50
BstNI CCWGG 1 cut(s) 18
BstNSI RCATGY 1 cut(s) 510
BstSCI CCNGG 1 cut(s) 16
BstSFI CTRYAG 2 cut(s) 422, 515
BstX2I RGATCY 1 cut(s) 344
BstYI RGATCY 1 cut(s) 344
BsuI GTATCC 1 cut(s) 100
BsuRI GGCC 1 cut(s) 160
BtsCI GGATG 1 cut(s) 313
Cac8I GCNNGC 1 cut(s) 411
CaiI CAGNNNCTG 1 cut(s) 365
CfoI GCGC 2 cut(s) 7, 55
Cfr10I RCCGGY 1 cut(s) 49
Cfr13I GGNCC 2 cut(s) 159, 291
CseI GACGC 1 cut(s) 512
Csp6I GTAC 2 cut(s) 29, 431
CviAII CATG 2 cut(s) 166, 507
CviJI RGCY 9 cut(s) 39, 70, 138, 160, 254, 302, 365, 409, 514
CviKI_1 RGCY 9 cut(s) 39, 70, 138, 160, 254, 302, 365, 409, 514
CviQI GTAC 2 cut(s) 29, 431
DdeI CTNAG 2 cut(s) 284, 499
DpnI GATC 2 cut(s) 228, 346
DpnII GATC 2 cut(s) 226, 344
Eam1104I CTCTTC 1 cut(s) 292
EarI CTCTTC 1 cut(s) 292
Ecl136II GAGCTC 1 cut(s) 302
Eco24I GRGCYC 1 cut(s) 304
Eco47I GGWCC 1 cut(s) 291
Eco53kI GAGCTC 1 cut(s) 302
Eco57I CTGAAG 1 cut(s) 117
Eco88I CYCGRG 1 cut(s) 99
EcoICRI GAGCTC 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 16
EcoT38I GRGCYC 1 cut(s) 304
FaeI CATG 2 cut(s) 169, 510
FaiI YATR 8 cut(s) 167, 193, 389, 443, 457, 459, 508, 517
FatI CATG 2 cut(s) 165, 506
FbaI TGATCA 1 cut(s) 226
FokI GGATG 1 cut(s) 320
FriOI GRGCYC 1 cut(s) 304
FspBI CTAG 1 cut(s) 410
GlaI GCGC 2 cut(s) 6, 54
GsaI CCCAGC 1 cut(s) 409
GsuI CTGGAG 1 cut(s) 242
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 160
HapII CCGG 3 cut(s) 50, 294, 305
HgaI GACGC 1 cut(s) 512
HhaI GCGC 2 cut(s) 7, 55
Hin1II CATG 2 cut(s) 169, 510
Hin6I GCGC 2 cut(s) 5, 53
HinP1I GCGC 2 cut(s) 5, 53
HpaII CCGG 3 cut(s) 50, 294, 305
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 2 cut(s) 361, 502
Hpy188III TCNNGA 4 cut(s) 45, 259, 294, 305
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 4 cut(s) 60, 282, 358, 409
HpyCH4III ACNGT 4 cut(s) 88, 179, 426, 479
HpyCH4IV ACGT 2 cut(s) 57, 77
HpyCH4V TGCA 1 cut(s) 470
HpyF3I CTNAG 2 cut(s) 284, 499
HpySE526I ACGT 2 cut(s) 57, 77
Hsp92II CATG 2 cut(s) 169, 510
HspAI GCGC 2 cut(s) 5, 53
Kpn2I TCCGGA 2 cut(s) 293, 304
Ksp22I TGATCA 1 cut(s) 226
Kzo9I GATC 2 cut(s) 226, 344
LguI GCTCTTC 1 cut(s) 292
LmnI GCTCC 1 cut(s) 307
MaeI CTAG 1 cut(s) 410
MaeII ACGT 2 cut(s) 57, 77
MaeIII GTNAC 2 cut(s) 185, 479
MalI GATC 2 cut(s) 228, 346
MboI GATC 2 cut(s) 226, 344
MboII GAAGA 3 cut(s) 286, 309, 385
MflI RGATCY 1 cut(s) 344
MhlI GDGCHC 1 cut(s) 304
MluCI AATT 1 cut(s) 486
MnlI CCTC 4 cut(s) 95, 150, 194, 444
MroI TCCGGA 2 cut(s) 293, 304
MspI CCGG 3 cut(s) 50, 294, 305
MspR9I CCNGG 1 cut(s) 18
Mva1269I GAATGC 1 cut(s) 413
MvaI CCWGG 1 cut(s) 18
NdeII GATC 2 cut(s) 226, 344
NheI GCTAGC 1 cut(s) 409
NlaIII CATG 2 cut(s) 169, 510
NlaIV GGNNCC 1 cut(s) 15
NspI RCATGY 1 cut(s) 510
PciSI GCTCTTC 1 cut(s) 292
PctI GAATGC 1 cut(s) 413
Pfl23II CGTACG 1 cut(s) 28
PflFI GACNNNGTC 1 cut(s) 119
Psp124BI GAGCTC 1 cut(s) 304
Psp6I CCWGG 1 cut(s) 16
PspFI CCCAGC 1 cut(s) 405
PspGI CCWGG 1 cut(s) 16
PspLI CGTACG 1 cut(s) 28
PspN4I GGNNCC 1 cut(s) 15
PspPI GGNCC 2 cut(s) 159, 291
PstNI CAGNNNCTG 1 cut(s) 365
PsuI RGATCY 1 cut(s) 344
PsyI GACNNNGTC 1 cut(s) 119
RsaI GTAC 2 cut(s) 30, 432
RsaNI GTAC 2 cut(s) 29, 431
SacI GAGCTC 1 cut(s) 304
SapI GCTCTTC 1 cut(s) 292
Sau3AI GATC 2 cut(s) 226, 344
Sau96I GGNCC 2 cut(s) 159, 291
ScrFI CCNGG 1 cut(s) 18
SduI GDGCHC 1 cut(s) 304
SfcI CTRYAG 2 cut(s) 422, 515
SinI GGWCC 1 cut(s) 291
Sse9I AATT 1 cut(s) 486
SspMI CTAG 1 cut(s) 410
SstI GAGCTC 1 cut(s) 304
StyD4I CCNGG 1 cut(s) 16
TaaI ACNGT 4 cut(s) 88, 179, 426, 479
TaiI ACGT 2 cut(s) 60, 80
TaqI TCGA 1 cut(s) 123
TasI AATT 1 cut(s) 486
TspDTI ATGAA 2 cut(s) 340, 430
Tth111I GACNNNGTC 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 291
XceI RCATGY 1 cut(s) 510
XspI CTAG 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.