Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000343.1

Orthogroup ID

OG0014125

Physical Location & Seq

Genomic Coordinates Reverse (-)

89710 .. 92580

Gene Structure 2871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000343.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atgatggatacggacccatcacacactaggaacgcagccaacactggcctgcttcctctatccccatctcaaaacgatataagtgttttggaaggttttgctgatactggtcatcagggggagatgcagacatcagggggagatgtctacatgttcacctcgaaaagtgaagggtgtgttgtgctctttttccccttcgaccgagccaccggcgggcggcgaagccaaccatcgtcagtttcaatggcgcttctggttcctggtgggttcgtacgagtaaggccactacgcttgtctccgccagcgcacgttagacgaaagctcacgacttttgctactgtatccccaacccgaggagattcagtggactgggttgaagcaacttcaagcttctttgaagatgacacgaggcccatcatgttatttgacggtgtttgcaacttgtgtaatgggggtgtaaagttcgtgcgtgataatgatcgaaataggagaatgagatttgaagctctccagagtgaagcagggaggaagctgctacgaagatcgggaagagctcctgatgatatatccagtgttgtgctggttgaaaaggatagatcattcatcaagtcagaagctgttgtgaagataatggaacatatagacttacccctcccccagctagcattcttcgtacagtttgtacctctcttcatacgggattttgtatatgacaatgttgcaaacaatcgttacacaatttttggtcgctcagagtcgtgtgagatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF393

Protein Analysis

256

Amino Acids

28.57

Weight (kDa)

6.91

Isoelectric Point (pI)

56.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52590
fragaria_vesca	FvH4_6g30000
malus_domestica	MD00G1022200.v1.1
prunus_persica	Prupe.3G083500_v2.0.a1 Prupe.3G083500_v2.0.a1 Prupe.3G083500_v2.0.a1
pyrus_communis	pycom17g21400
rosa_chinensis	RchiOBHm_Chr2g0136021
rosa_laevigata	RLG00000019497
rosa_multiflora	Rmu_ssc0000343.1_g000029
rosa_roxburghii	Rroxscaffold_2G00108690
rosa_rugosa	Rorug02G0327700.1
rosa_samantha	Rh2AG379400 Rh2BG385800 Rh2CG365000 Rh2DG402200
rosa_wichuraiana	Rw2G030920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	147
AciI	CCGC	3 cut(s)	213, 217, 299
AfaI	GTAC	3 cut(s)	273, 675, 684
AfiI	CCNNNNNNNGG	3 cut(s)	213, 216, 353
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	6 cut(s)	243, 377, 387, 398, 503, 587
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	7 cut(s)	322, 390, 506, 532, 554, 617, 661
AluI	AGCT	7 cut(s)	322, 390, 506, 532, 554, 617, 661
Alw21I	GWGCWC	2 cut(s)	186, 556
Alw26I	GTCTC	1 cut(s)	300
AlwNI	CAGNNNCTG	1 cut(s)	617
Ama87I	CYCGRG	1 cut(s)	351
AoxI	GGCC	3 cut(s)	46, 281, 410
ApeKI	GCWGC	2 cut(s)	35, 532
AspLEI	GCGC	2 cut(s)	250, 307
AspS9I	GGNCC	2 cut(s)	13, 411
AsuHPI	GGTGA	1 cut(s)	148
AsuNHI	GCTAGC	1 cut(s)	661
AvaI	CYCGRG	1 cut(s)	351
AvaII	GGWCC	1 cut(s)	13
BanII	GRGCYC	1 cut(s)	556
BauI	CACGAG	1 cut(s)	406
Bbv12I	GWGCWC	2 cut(s)	186, 556
BbvI	GCAGC	2 cut(s)	47, 519
BccI	CCATC	4 cut(s)	25, 73, 238, 422
BciT130I	CCWGG	1 cut(s)	261
BciVI	GTATCC	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	300
BfaI	CTAG	2 cut(s)	27, 662
BfoI	RGCGCY	1 cut(s)	251
BfuI	GTATCC	1 cut(s)	352
BisI	GCNGC	3 cut(s)	36, 218, 533
BlsI	GCNGC	3 cut(s)	37, 219, 534
Bme1390I	CCNGG	1 cut(s)	261
Bme18I	GGWCC	1 cut(s)	13
BmeT110I	CYCGRG	1 cut(s)	351
BmgT120I	GGNCC	2 cut(s)	13, 411
BmiI	GGNNCC	2 cut(s)	15, 258
BmrFI	CCNGG	1 cut(s)	261
BmrI	ACTGGG	1 cut(s)	379
BmsI	GCATC	1 cut(s)	114
BmtI	GCTAGC	1 cut(s)	665
BmuI	ACTGGG	1 cut(s)	379
BpmI	CTGGAG	1 cut(s)	494
BsaBI	GATNNNNATC	1 cut(s)	477
BsaJI	CCNNGG	1 cut(s)	352
BsaXI	ACNNNNNCTCC	2 cut(s)	348, 378
Bsc4I	CCNNNNNNNGG	3 cut(s)	213, 216, 353
Bse118I	RCCGGY	1 cut(s)	209
Bse1I	ACTGG	4 cut(s)	49, 112, 374, 570
Bse8I	GATNNNNATC	1 cut(s)	477
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	352
BseJI	GATNNNNATC	1 cut(s)	477
BseLI	CCNNNNNNNGG	3 cut(s)	213, 216, 353
BseMII	CTCAG	1 cut(s)	765
BseNI	ACTGG	4 cut(s)	49, 112, 374, 570
BseRI	GAGGAG	1 cut(s)	369
BseXI	GCAGC	2 cut(s)	47, 519
BseYI	CCCAGC	1 cut(s)	657
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	3 cut(s)	48, 283, 412
BsiEI	CGRYCG	1 cut(s)	202
BsiHKAI	GWGCWC	2 cut(s)	186, 556
BsiHKCI	CYCGRG	1 cut(s)	351
BsiSI	CCGG	1 cut(s)	210
BsiWI	CGTACG	1 cut(s)	271
BslI	CCNNNNNNNGG	3 cut(s)	213, 216, 353
BsmAI	GTCTC	1 cut(s)	300
BsmI	GAATGC	1 cut(s)	665
BsnI	GGCC	3 cut(s)	48, 283, 412
BsoBI	CYCGRG	1 cut(s)	351
Bsp1286I	GDGCHC	2 cut(s)	186, 556
Bsp143I	GATC	3 cut(s)	478, 542, 596
BspACI	CCGC	3 cut(s)	213, 217, 299
BspANI	GGCC	3 cut(s)	48, 283, 412
BspCNI	CTCAG	1 cut(s)	764
BspLI	GGNNCC	2 cut(s)	15, 258
BspOI	GCTAGC	1 cut(s)	665
BspQI	GCTCTTC	1 cut(s)	544
BsrFI	RCCGGY	1 cut(s)	209
BsrI	ACTGG	4 cut(s)	49, 112, 374, 570
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	352
BssMI	GATC	3 cut(s)	478, 542, 596
BssSI	CACGAG	1 cut(s)	406
Bst2BI	CACGAG	1 cut(s)	406
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	3 cut(s)	340, 431, 678
Bst6I	CTCTTC	2 cut(s)	544, 695
BstC8I	GCNNGC	4 cut(s)	50, 215, 303, 663
BstDEI	CTNAG	1 cut(s)	751
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	2 cut(s)	250, 307
BstKTI	GATC	3 cut(s)	481, 545, 599
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	3 cut(s)	478, 542, 596
BstMCI	CGRYCG	1 cut(s)	202
BstNI	CCWGG	1 cut(s)	261
BstNSI	RCATGY	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	259
BstV1I	GCAGC	2 cut(s)	47, 519
BsuI	GTATCC	1 cut(s)	352
BsuRI	GGCC	3 cut(s)	48, 283, 412
BtsIMutI	CAGTG	3 cut(s)	42, 369, 577
Cac8I	GCNNGC	4 cut(s)	50, 215, 303, 663
CaiI	CAGNNNCTG	1 cut(s)	617
CfoI	GCGC	2 cut(s)	250, 307
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	2 cut(s)	13, 411
Csp6I	GTAC	3 cut(s)	272, 674, 683
CspCI	CAANNNNNGTGG	2 cut(s)	273, 308
CviAII	CATG	2 cut(s)	151, 418
CviQI	GTAC	3 cut(s)	272, 674, 683
DdeI	CTNAG	1 cut(s)	751
DpnI	GATC	3 cut(s)	480, 544, 598
DpnII	GATC	3 cut(s)	478, 542, 596
Eam1104I	CTCTTC	2 cut(s)	544, 695
EarI	CTCTTC	2 cut(s)	544, 695
EciI	GGCGGA	1 cut(s)	288
Ecl136II	GAGCTC	1 cut(s)	554
Eco24I	GRGCYC	1 cut(s)	556
Eco47I	GGWCC	1 cut(s)	13
Eco53kI	GAGCTC	1 cut(s)	554
Eco88I	CYCGRG	1 cut(s)	351
EcoICRI	GAGCTC	1 cut(s)	554
EcoRII	CCWGG	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	556
FaeI	CATG	2 cut(s)	154, 421
FatI	CATG	2 cut(s)	150, 417
FauI	CCCGC	1 cut(s)	206
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	3 cut(s)	36, 218, 533
FriOI	GRGCYC	1 cut(s)	556
Fsp4HI	GCNGC	3 cut(s)	36, 218, 533
FspBI	CTAG	2 cut(s)	27, 662
GlaI	GCGC	2 cut(s)	249, 306
GluI	GCNGC	3 cut(s)	36, 218, 533
GsaI	CCCAGC	1 cut(s)	661
GsuI	CTGGAG	1 cut(s)	494
HaeII	RGCGCY	1 cut(s)	251
HaeIII	GGCC	3 cut(s)	48, 283, 412
HapII	CCGG	1 cut(s)	210
HhaI	GCGC	2 cut(s)	250, 307
Hin1II	CATG	2 cut(s)	154, 421
Hin6I	GCGC	2 cut(s)	248, 305
HinP1I	GCGC	2 cut(s)	248, 305
HindIII	AAGCTT	1 cut(s)	388
HinfI	GANTC	2 cut(s)	359, 755
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	3 cut(s)	148, 156, 367
Hpy188I	TCNGA	2 cut(s)	613, 754
Hpy188III	TCNNGA	4 cut(s)	325, 511, 546, 557
Hpy8I	GTNNAC	3 cut(s)	148, 156, 367
HpyAV	CCTTC	3 cut(s)	86, 164, 205
HpyCH4III	ACNGT	3 cut(s)	340, 431, 678
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	3 cut(s)	127, 438, 722
HpyF3I	CTNAG	1 cut(s)	751
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	2 cut(s)	154, 421
HspAI	GCGC	2 cut(s)	248, 305
Kzo9I	GATC	3 cut(s)	478, 542, 596
LguI	GCTCTTC	1 cut(s)	544
LmnI	GCTCC	1 cut(s)	559
Lsp1109I	GCAGC	2 cut(s)	47, 519
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	2 cut(s)	27, 662
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	731
MalI	GATC	3 cut(s)	480, 544, 598
MboI	GATC	3 cut(s)	478, 542, 596
MboII	GAAGA	6 cut(s)	410, 552, 561, 637, 661, 682
MhlI	GDGCHC	2 cut(s)	186, 556
MluCI	AATT	1 cut(s)	738
MlyI	GAGTC	1 cut(s)	764
MnlI	CCTC	7 cut(s)	66, 169, 347, 402, 519, 662, 696
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	261
Mva1269I	GAATGC	1 cut(s)	665
MvaI	CCWGG	1 cut(s)	261
NdeII	GATC	3 cut(s)	478, 542, 596
NheI	GCTAGC	1 cut(s)	661
NlaIII	CATG	2 cut(s)	154, 421
NlaIV	GGNNCC	2 cut(s)	15, 258
NspI	RCATGY	1 cut(s)	154
PciI	ACATGT	1 cut(s)	150
PciSI	GCTCTTC	1 cut(s)	544
PctI	GAATGC	1 cut(s)	665
PfeI	GAWTC	1 cut(s)	359
Pfl23II	CGTACG	1 cut(s)	271
PkrI	GCNGC	3 cut(s)	37, 219, 534
PleI	GAGTC	1 cut(s)	763
PpsI	GAGTC	1 cut(s)	763
PscI	ACATGT	1 cut(s)	150
Psp124BI	GAGCTC	1 cut(s)	556
Psp6I	CCWGG	1 cut(s)	259
PspFI	CCCAGC	1 cut(s)	657
PspGI	CCWGG	1 cut(s)	259
PspLI	CGTACG	1 cut(s)	271
PspN4I	GGNNCC	2 cut(s)	15, 258
PspPI	GGNCC	2 cut(s)	13, 411
PstNI	CAGNNNCTG	1 cut(s)	617
RsaI	GTAC	3 cut(s)	273, 675, 684
RsaNI	GTAC	3 cut(s)	272, 674, 683
SacI	GAGCTC	1 cut(s)	556
SapI	GCTCTTC	1 cut(s)	544
SatI	GCNGC	3 cut(s)	36, 218, 533
Sau3AI	GATC	3 cut(s)	478, 542, 596
Sau96I	GGNCC	2 cut(s)	13, 411
SchI	GAGTC	1 cut(s)	764
ScrFI	CCNGG	1 cut(s)	261
SduI	GDGCHC	2 cut(s)	186, 556
SfaNI	GCATC	1 cut(s)	114
SgrAI	CRCCGGYG	1 cut(s)	209
SinI	GGWCC	1 cut(s)	13
Sse9I	AATT	1 cut(s)	738
SsiI	CCGC	3 cut(s)	213, 217, 299
SspMI	CTAG	2 cut(s)	27, 662
SstI	GAGCTC	1 cut(s)	556
StyD4I	CCNGG	1 cut(s)	259
TaaI	ACNGT	3 cut(s)	340, 431, 678
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	3 cut(s)	161, 198, 481
TaqII	GACCGA	1 cut(s)	216
TasI	AATT	1 cut(s)	738
TauI	GCSGC	1 cut(s)	220
TfiI	GAWTC	1 cut(s)	359
TscAI	CASTG	3 cut(s)	49, 369, 577
TseI	GCWGC	2 cut(s)	35, 532
TspDTI	ATGAA	2 cut(s)	592, 682
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	3 cut(s)	49, 369, 577
VpaK11BI	GGWCC	1 cut(s)	13
XceI	RCATGY	1 cut(s)	154
XcmI	CCANNNNNNNNNTGG	1 cut(s)	577
XmiI	GTMKAC	1 cut(s)	147
XspI	CTAG	2 cut(s)	27, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.