Rh2DG402200

DCC family protein At1g52590

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0014125
Physical Location & Seq
Reverse (-)
58557477 .. 58561674
4198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG402200.1

Sequence Viewer

Length: 528 bp
ATGGCGCTTCTGGTTCCTGGTGGGTTTGTACGAGTAAGGCCACTACGCTTGTCTCCCCCAGCGCACGTTAGACGAAAGCTCACGACTTTTGCTACTGTATCCCCAACCCGAGGAGATTCAGTGGACTGGGTTGAAGCAACTTCAAGCTTCTTTGAAGATGACACGAGGCCCATCATGTTATTTGACGGTGTTTGCAACTTGTGTAATGGGGGTGTAAAGTTCGTGCGTGATAATGATCGAAATAGGAGAATGAGATTTGAAGCTCTCCAGAGTGAAGCAGGGAGGAAGCTGCTGCGAAGATCGGGAAGAGCTCCTGATGATATATCCAGTGTTGTGCTGGTTGAAAAGGATAGATCATTCATCAAGTCAGAAGCTGTTGTGAAGATAATGGAACATATAGACTTACCCTTCCCCCAGCTAGCATTCTTCGTACAGTTTGTACCTCTCTTCATACGGGACTTTGTATATGACAATGTTGCAAACAATCGTTACACAATTTTTGGTCGCTCAGAGTCGTGTGAGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF393

Protein Analysis

175

Amino Acids

19.99

Weight (kDa)

9.21

Isoelectric Point (pI)

60.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DCC1-like PF04134 60 - 169 7.8e-27 DCC1-like thiol-disulfide oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52590
fragaria_vesca FvH4_6g30000
malus_domestica MD00G1022200.v1.1
prunus_persica Prupe.3G083500_v2.0.a1 Prupe.3G083500_v2.0.a1 Prupe.3G083500_v2.0.a1
pyrus_communis pycom17g21400
rosa_chinensis RchiOBHm_Chr2g0136021
rosa_laevigata RLG00000019497
rosa_multiflora Rmu_ssc0000343.1_g000029
rosa_roxburghii Rroxscaffold_2G00108690
rosa_rugosa Rorug02G0327700.1
rosa_samantha Rh2AG379400 Rh2BG385800 Rh2CG365000 Rh2DG402200
rosa_wichuraiana Rw2G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 3 cut(s) 30, 432, 441
AfiI CCNNNNNNNGG 1 cut(s) 110
AgsI TTSAA 5 cut(s) 134, 144, 155, 260, 344
AjnI CCWGG 1 cut(s) 16
AluBI AGCT 7 cut(s) 79, 147, 263, 289, 311, 374, 418
AluI AGCT 7 cut(s) 79, 147, 263, 289, 311, 374, 418
Alw21I GWGCWC 1 cut(s) 313
Alw26I GTCTC 1 cut(s) 57
AlwNI CAGNNNCTG 1 cut(s) 374
Ama87I CYCGRG 1 cut(s) 108
AoxI GGCC 2 cut(s) 38, 167
ApeKI GCWGC 2 cut(s) 289, 292
AspLEI GCGC 2 cut(s) 7, 64
AspS9I GGNCC 1 cut(s) 168
AsuNHI GCTAGC 1 cut(s) 418
AvaI CYCGRG 1 cut(s) 108
BanII GRGCYC 1 cut(s) 313
BauI CACGAG 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 313
BbvI GCAGC 2 cut(s) 276, 279
BccI CCATC 1 cut(s) 179
BciT130I CCWGG 1 cut(s) 18
BciVI GTATCC 1 cut(s) 109
BcoDI GTCTC 1 cut(s) 57
BfaI CTAG 1 cut(s) 419
BfoI RGCGCY 1 cut(s) 8
BfuI GTATCC 1 cut(s) 109
BisI GCNGC 2 cut(s) 290, 293
BlsI GCNGC 2 cut(s) 291, 294
Bme1390I CCNGG 1 cut(s) 18
BmeT110I CYCGRG 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 168
BmiI GGNNCC 1 cut(s) 15
BmrFI CCNGG 1 cut(s) 18
BmrI ACTGGG 1 cut(s) 136
BmtI GCTAGC 1 cut(s) 422
BmuI ACTGGG 1 cut(s) 136
BpmI CTGGAG 1 cut(s) 251
BsaBI GATNNNNATC 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 109
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse1I ACTGG 2 cut(s) 131, 327
Bse8I GATNNNNATC 1 cut(s) 234
BseBI CCWGG 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 109
BseJI GATNNNNATC 1 cut(s) 234
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMII CTCAG 1 cut(s) 522
BseNI ACTGG 2 cut(s) 131, 327
BseRI GAGGAG 1 cut(s) 126
BseXI GCAGC 2 cut(s) 276, 279
BseYI CCCAGC 2 cut(s) 58, 414
BshFI GGCC 2 cut(s) 40, 169
BsiHKAI GWGCWC 1 cut(s) 313
BsiHKCI CYCGRG 1 cut(s) 108
BslFI GGGAC 1 cut(s) 470
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 57
BsmFI GGGAC 1 cut(s) 470
BsmI GAATGC 1 cut(s) 422
BsnI GGCC 2 cut(s) 40, 169
BsoBI CYCGRG 1 cut(s) 108
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 3 cut(s) 235, 299, 353
BspANI GGCC 2 cut(s) 40, 169
BspCNI CTCAG 1 cut(s) 521
BspLI GGNNCC 1 cut(s) 15
BspOI GCTAGC 1 cut(s) 422
BspQI GCTCTTC 1 cut(s) 301
BsrI ACTGG 2 cut(s) 131, 327
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 3 cut(s) 235, 299, 353
BssSI CACGAG 1 cut(s) 163
Bst2BI CACGAG 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 18
Bst4CI ACNGT 3 cut(s) 97, 188, 435
Bst6I CTCTTC 2 cut(s) 301, 452
BstC8I GCNNGC 1 cut(s) 420
BstDEI CTNAG 1 cut(s) 508
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 64
BstKTI GATC 3 cut(s) 238, 302, 356
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 3 cut(s) 235, 299, 353
BstNI CCWGG 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 16
BstV1I GCAGC 2 cut(s) 276, 279
BsuI GTATCC 1 cut(s) 109
BsuRI GGCC 2 cut(s) 40, 169
BtsIMutI CAGTG 2 cut(s) 126, 334
Cac8I GCNNGC 1 cut(s) 420
CaiI CAGNNNCTG 1 cut(s) 374
CfoI GCGC 2 cut(s) 7, 64
Cfr13I GGNCC 1 cut(s) 168
Csp6I GTAC 3 cut(s) 29, 431, 440
CspCI CAANNNNNGTGG 2 cut(s) 30, 65
CviAII CATG 1 cut(s) 175
CviJI RGCY 9 cut(s) 40, 79, 147, 169, 263, 289, 311, 374, 418
CviKI_1 RGCY 9 cut(s) 40, 79, 147, 169, 263, 289, 311, 374, 418
CviQI GTAC 3 cut(s) 29, 431, 440
DdeI CTNAG 1 cut(s) 508
DpnI GATC 3 cut(s) 237, 301, 355
DpnII GATC 3 cut(s) 235, 299, 353
Eam1104I CTCTTC 2 cut(s) 301, 452
EarI CTCTTC 2 cut(s) 301, 452
Ecl136II GAGCTC 1 cut(s) 311
Eco24I GRGCYC 1 cut(s) 313
Eco53kI GAGCTC 1 cut(s) 311
Eco88I CYCGRG 1 cut(s) 108
EcoICRI GAGCTC 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 16
EcoT38I GRGCYC 1 cut(s) 313
FaeI CATG 1 cut(s) 178
FaiI YATR 8 cut(s) 176, 323, 396, 398, 452, 466, 468, 526
FaqI GGGAC 1 cut(s) 470
FatI CATG 1 cut(s) 174
Fnu4HI GCNGC 2 cut(s) 290, 293
FriOI GRGCYC 1 cut(s) 313
Fsp4HI GCNGC 2 cut(s) 290, 293
FspBI CTAG 1 cut(s) 419
GlaI GCGC 2 cut(s) 6, 63
GluI GCNGC 2 cut(s) 290, 293
GsaI CCCAGC 2 cut(s) 62, 418
GsuI CTGGAG 1 cut(s) 251
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 40, 169
HhaI GCGC 2 cut(s) 7, 64
Hin1II CATG 1 cut(s) 178
Hin6I GCGC 2 cut(s) 5, 62
HinP1I GCGC 2 cut(s) 5, 62
HindIII AAGCTT 1 cut(s) 145
HinfI GANTC 2 cut(s) 116, 512
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 2 cut(s) 370, 511
Hpy188III TCNNGA 4 cut(s) 82, 268, 303, 314
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 1 cut(s) 418
HpyCH4III ACNGT 3 cut(s) 97, 188, 435
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 2 cut(s) 195, 479
HpyF3I CTNAG 1 cut(s) 508
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 1 cut(s) 178
HspAI GCGC 2 cut(s) 5, 62
Kzo9I GATC 3 cut(s) 235, 299, 353
LguI GCTCTTC 1 cut(s) 301
LmnI GCTCC 1 cut(s) 316
Lsp1109I GCAGC 2 cut(s) 276, 279
MaeI CTAG 1 cut(s) 419
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 1 cut(s) 488
MalI GATC 3 cut(s) 237, 301, 355
MboI GATC 3 cut(s) 235, 299, 353
MboII GAAGA 6 cut(s) 167, 309, 318, 394, 418, 439
MhlI GDGCHC 1 cut(s) 313
MluCI AATT 1 cut(s) 495
MlyI GAGTC 1 cut(s) 521
MnlI CCTC 4 cut(s) 104, 159, 276, 453
MspR9I CCNGG 1 cut(s) 18
Mva1269I GAATGC 1 cut(s) 422
MvaI CCWGG 1 cut(s) 18
NdeII GATC 3 cut(s) 235, 299, 353
NheI GCTAGC 1 cut(s) 418
NlaIII CATG 1 cut(s) 178
NlaIV GGNNCC 1 cut(s) 15
PciSI GCTCTTC 1 cut(s) 301
PctI GAATGC 1 cut(s) 422
PfeI GAWTC 1 cut(s) 116
PkrI GCNGC 2 cut(s) 291, 294
PleI GAGTC 1 cut(s) 520
PpsI GAGTC 1 cut(s) 520
Psp124BI GAGCTC 1 cut(s) 313
Psp6I CCWGG 1 cut(s) 16
PspFI CCCAGC 2 cut(s) 58, 414
PspGI CCWGG 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 15
PspPI GGNCC 1 cut(s) 168
PstNI CAGNNNCTG 1 cut(s) 374
RsaI GTAC 3 cut(s) 30, 432, 441
RsaNI GTAC 3 cut(s) 29, 431, 440
SacI GAGCTC 1 cut(s) 313
SapI GCTCTTC 1 cut(s) 301
SatI GCNGC 2 cut(s) 290, 293
Sau3AI GATC 3 cut(s) 235, 299, 353
Sau96I GGNCC 1 cut(s) 168
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 1 cut(s) 18
SduI GDGCHC 1 cut(s) 313
SetI ASST 9 cut(s) 69, 81, 149, 265, 291, 313, 376, 420, 445
Sse9I AATT 1 cut(s) 495
SspMI CTAG 1 cut(s) 419
SstI GAGCTC 1 cut(s) 313
StyD4I CCNGG 1 cut(s) 16
TaaI ACNGT 3 cut(s) 97, 188, 435
TaiI ACGT 1 cut(s) 69
TaqI TCGA 1 cut(s) 238
TasI AATT 1 cut(s) 495
TfiI GAWTC 1 cut(s) 116
TscAI CASTG 2 cut(s) 126, 334
TseI GCWGC 2 cut(s) 289, 292
TspDTI ATGAA 2 cut(s) 349, 439
TspRI CASTG 2 cut(s) 126, 334
XcmI CCANNNNNNNNNTGG 1 cut(s) 334
XspI CTAG 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.