pycom17g21400

DCC family protein At1g52590

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0014125
Physical Location & Seq
Forward (+)
19772104 .. 19773794
1691 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g21400.3

Sequence Viewer

Length: 543 bp
ATGGCGCTTCTGGTTCCTGGCGGTGGTGGGTGCGTACGACTACCAGTAGGCCACTCGCCGCGGCCGGCGCACGTTAGAACGAGCTTCGTTACCTTTGCTACAGTGTCCCCAAAGACCCCAACCAAAGGCGACAGAGTGGACTGGGTGGAAGCAACTTCAGGCTTCTTTGAAAATGACACGAGGCCCATCATGTTGTTCGACGGTGTTTGTAACTTGTGTAATGGAGGTGTAAAGTTCGTGCGGGATAATGATCGAAATAGGAGCATAAGGTTTGAAGCTCTCCAGAGTGAAGCAGGGAAGAAACTGCTCAGAAGGTCTGGAAGAGCTCCTGATGATATTTCAAGTGTTGTTCTTGTTGAAAAGGATAGATCATTCATCAAGTCAGAAGCTGTTGTGAAGATAATGGAATATATAGACTTGCCCTTCCCCCAGCTAGCGTTTTTCGCCCTGTTTGTACCTCTTTTTGTAAGGGATTTTCTATACGACAATGTAGCAAACAACCGTTACACAATCTTTGGTCGCTCAGACACGTGTGAGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF393

Protein Analysis

181

Amino Acids

20.12

Weight (kDa)

8.75

Isoelectric Point (pI)

45.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52590
fragaria_vesca FvH4_6g30000
malus_domestica MD00G1022200.v1.1
prunus_persica Prupe.3G083500_v2.0.a1 Prupe.3G083500_v2.0.a1 Prupe.3G083500_v2.0.a1
pyrus_communis pycom17g21400
rosa_chinensis RchiOBHm_Chr2g0136021
rosa_laevigata RLG00000019497
rosa_multiflora Rmu_ssc0000343.1_g000029
rosa_roxburghii Rroxscaffold_2G00108690
rosa_rugosa Rorug02G0327700.1
rosa_samantha Rh2AG379400 Rh2BG385800 Rh2CG365000 Rh2DG402200
rosa_wichuraiana Rw2G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 61
AciI CCGC 4 cut(s) 21, 59, 61, 241
AcoI YGGCCR 1 cut(s) 62
AcuI CTGAAG 1 cut(s) 141
AcvI CACGTG 1 cut(s) 531
AfaI GTAC 2 cut(s) 36, 456
AfiI CCNNNNNNNGG 2 cut(s) 23, 125
AflIII ACRYGT 2 cut(s) 528, 530
AgsI TTSAA 4 cut(s) 170, 275, 342, 359
AjnI CCWGG 1 cut(s) 16
AluBI AGCT 5 cut(s) 84, 278, 326, 389, 433
AluI AGCT 5 cut(s) 84, 278, 326, 389, 433
Alw21I GWGCWC 1 cut(s) 328
AlwNI CAGNNNCTG 1 cut(s) 389
AoxI GGCC 3 cut(s) 49, 62, 182
AspLEI GCGC 2 cut(s) 7, 70
AspS9I GGNCC 1 cut(s) 183
AsuNHI GCTAGC 1 cut(s) 433
BanII GRGCYC 1 cut(s) 328
BauI CACGAG 1 cut(s) 178
BbrPI CACGTG 1 cut(s) 531
Bbv12I GWGCWC 1 cut(s) 328
BccI CCATC 1 cut(s) 194
BciT130I CCWGG 1 cut(s) 18
BfaI CTAG 1 cut(s) 434
BfmI CTRYAG 1 cut(s) 99
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 2 cut(s) 59, 62
BlsI GCNGC 2 cut(s) 60, 63
Bme1390I CCNGG 1 cut(s) 18
BmgT120I GGNCC 1 cut(s) 183
BmiI GGNNCC 1 cut(s) 15
BmrFI CCNGG 1 cut(s) 18
BmrI ACTGGG 1 cut(s) 151
BmtI GCTAGC 1 cut(s) 437
BmuI ACTGGG 1 cut(s) 151
BpmI CTGGAG 1 cut(s) 266
BsaAI YACGTR 1 cut(s) 531
BsaBI GATNNNNATC 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 59
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 125
Bse118I RCCGGY 1 cut(s) 64
Bse1I ACTGG 2 cut(s) 44, 146
Bse8I GATNNNNATC 1 cut(s) 249
BseBI CCWGG 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 59
BseJI GATNNNNATC 1 cut(s) 249
BseLI CCNNNNNNNGG 2 cut(s) 23, 125
BseMII CTCAG 2 cut(s) 322, 537
BseNI ACTGG 2 cut(s) 44, 146
BseX3I CGGCCG 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 429
Bsh1236I CGCG 1 cut(s) 61
Bsh1285I CGRYCG 1 cut(s) 65
BshFI GGCC 3 cut(s) 51, 64, 184
BsiEI CGRYCG 1 cut(s) 65
BsiHKAI GWGCWC 1 cut(s) 328
BsiSI CCGG 1 cut(s) 65
BsiWI CGTACG 1 cut(s) 34
BslFI GGGAC 1 cut(s) 91
BslI CCNNNNNNNGG 2 cut(s) 23, 125
BsmFI GGGAC 1 cut(s) 91
BsnI GGCC 3 cut(s) 51, 64, 184
Bsp1286I GDGCHC 1 cut(s) 328
Bsp143I GATC 2 cut(s) 250, 368
BspACI CCGC 4 cut(s) 21, 59, 61, 241
BspANI GGCC 3 cut(s) 51, 64, 184
BspCNI CTCAG 2 cut(s) 321, 536
BspFNI CGCG 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 15
BspOI GCTAGC 1 cut(s) 437
BspQI GCTCTTC 1 cut(s) 316
BsrFI RCCGGY 1 cut(s) 64
BsrI ACTGG 2 cut(s) 44, 146
BssAI RCCGGY 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 59
BssMI GATC 2 cut(s) 250, 368
BssSI CACGAG 1 cut(s) 178
Bst2BI CACGAG 1 cut(s) 178
Bst2UI CCWGG 1 cut(s) 18
Bst4CI ACNGT 3 cut(s) 103, 203, 503
Bst6I CTCTTC 1 cut(s) 316
BstBAI YACGTR 1 cut(s) 531
BstC8I GCNNGC 2 cut(s) 66, 435
BstDEI CTNAG 2 cut(s) 308, 523
BstDSI CCRYGG 1 cut(s) 59
BstFNI CGCG 1 cut(s) 61
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 70
BstKTI GATC 2 cut(s) 253, 371
BstMBI GATC 2 cut(s) 250, 368
BstMCI CGRYCG 1 cut(s) 65
BstMWI GCNNNNNNNGC 2 cut(s) 67, 443
BstNI CCWGG 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 16
BstSFI CTRYAG 1 cut(s) 99
BstUI CGCG 1 cut(s) 61
BstZI CGGCCG 1 cut(s) 62
BsuRI GGCC 3 cut(s) 51, 64, 184
BtgI CCRYGG 1 cut(s) 59
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 2 cut(s) 66, 435
CaiI CAGNNNCTG 1 cut(s) 389
CfoI GCGC 2 cut(s) 7, 70
Cfr10I RCCGGY 1 cut(s) 64
Cfr13I GGNCC 1 cut(s) 183
Cfr42I CCGCGG 1 cut(s) 62
Csp6I GTAC 2 cut(s) 35, 455
CviAII CATG 1 cut(s) 190
CviJI RGCY 9 cut(s) 51, 64, 84, 162, 184, 278, 326, 389, 433
CviKI_1 RGCY 9 cut(s) 51, 64, 84, 162, 184, 278, 326, 389, 433
CviQI GTAC 2 cut(s) 35, 455
DdeI CTNAG 2 cut(s) 308, 523
DpnI GATC 2 cut(s) 252, 370
DpnII GATC 2 cut(s) 250, 368
EaeI YGGCCR 1 cut(s) 62
EagI CGGCCG 1 cut(s) 62
Eam1104I CTCTTC 1 cut(s) 316
EarI CTCTTC 1 cut(s) 316
Ecl136II GAGCTC 1 cut(s) 326
EclXI CGGCCG 1 cut(s) 62
Eco24I GRGCYC 1 cut(s) 328
Eco52I CGGCCG 1 cut(s) 62
Eco53kI GAGCTC 1 cut(s) 326
Eco57I CTGAAG 1 cut(s) 141
Eco72I CACGTG 1 cut(s) 531
EcoICRI GAGCTC 1 cut(s) 326
EcoRII CCWGG 1 cut(s) 16
EcoT38I GRGCYC 1 cut(s) 328
FaeI CATG 1 cut(s) 193
FaiI YATR 6 cut(s) 191, 266, 411, 413, 481, 541
FaqI GGGAC 1 cut(s) 91
FatI CATG 1 cut(s) 189
FauI CCCGC 1 cut(s) 234
Fnu4HI GCNGC 2 cut(s) 59, 62
FriOI GRGCYC 1 cut(s) 328
Fsp4HI GCNGC 2 cut(s) 59, 62
FspBI CTAG 1 cut(s) 434
GlaI GCGC 2 cut(s) 6, 69
GluI GCNGC 2 cut(s) 59, 62
GsaI CCCAGC 1 cut(s) 433
GsuI CTGGAG 1 cut(s) 266
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 3 cut(s) 51, 64, 184
HapII CCGG 1 cut(s) 65
HhaI GCGC 2 cut(s) 7, 70
Hin1II CATG 1 cut(s) 193
Hin6I GCGC 2 cut(s) 5, 68
HinP1I GCGC 2 cut(s) 5, 68
HpaII CCGG 1 cut(s) 65
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 3 cut(s) 311, 385, 526
Hpy188III TCNNGA 3 cut(s) 283, 318, 329
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 2 cut(s) 306, 433
HpyCH4III ACNGT 3 cut(s) 103, 203, 503
HpyCH4IV ACGT 2 cut(s) 72, 530
HpyF10VI GCNNNNNNNGC 2 cut(s) 67, 443
HpyF3I CTNAG 2 cut(s) 308, 523
HpySE526I ACGT 2 cut(s) 72, 530
Hsp92II CATG 1 cut(s) 193
HspAI GCGC 2 cut(s) 5, 68
KroI GCCGGC 1 cut(s) 64
KroNI GCCGGC 1 cut(s) 66
KspI CCGCGG 1 cut(s) 62
Kzo9I GATC 2 cut(s) 250, 368
LguI GCTCTTC 1 cut(s) 316
LmnI GCTCC 2 cut(s) 261, 331
MaeI CTAG 1 cut(s) 434
MaeII ACGT 2 cut(s) 72, 530
MaeIII GTNAC 3 cut(s) 88, 209, 503
MalI GATC 2 cut(s) 252, 370
MboI GATC 2 cut(s) 250, 368
MboII GAAGA 3 cut(s) 310, 333, 409
MhlI GDGCHC 1 cut(s) 328
MnlI CCTC 3 cut(s) 174, 218, 468
MroNI GCCGGC 1 cut(s) 64
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 18
MvaI CCWGG 1 cut(s) 18
MvnI CGCG 1 cut(s) 61
MwoI GCNNNNNNNGC 2 cut(s) 67, 443
NaeI GCCGGC 1 cut(s) 66
NdeII GATC 2 cut(s) 250, 368
NgoMIV GCCGGC 1 cut(s) 64
NheI GCTAGC 1 cut(s) 433
NlaIII CATG 1 cut(s) 193
NlaIV GGNNCC 1 cut(s) 15
PciSI GCTCTTC 1 cut(s) 316
PdiI GCCGGC 1 cut(s) 66
Pfl23II CGTACG 1 cut(s) 34
PkrI GCNGC 2 cut(s) 60, 63
PmaCI CACGTG 1 cut(s) 531
PmlI CACGTG 1 cut(s) 531
Ppu21I YACGTR 1 cut(s) 531
Psp124BI GAGCTC 1 cut(s) 328
Psp6I CCWGG 1 cut(s) 16
PspCI CACGTG 1 cut(s) 531
PspFI CCCAGC 1 cut(s) 429
PspGI CCWGG 1 cut(s) 16
PspLI CGTACG 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 15
PspPI GGNCC 1 cut(s) 183
PstNI CAGNNNCTG 1 cut(s) 389
RsaI GTAC 2 cut(s) 36, 456
RsaNI GTAC 2 cut(s) 35, 455
SacI GAGCTC 1 cut(s) 328
SacII CCGCGG 1 cut(s) 62
SapI GCTCTTC 1 cut(s) 316
SatI GCNGC 2 cut(s) 59, 62
Sau3AI GATC 2 cut(s) 250, 368
Sau96I GGNCC 1 cut(s) 183
ScrFI CCNGG 1 cut(s) 18
SduI GDGCHC 1 cut(s) 328
SfcI CTRYAG 1 cut(s) 99
Sfr303I CCGCGG 1 cut(s) 62
SgrBI CCGCGG 1 cut(s) 62
SsiI CCGC 4 cut(s) 21, 59, 61, 241
SspMI CTAG 1 cut(s) 434
SstI GAGCTC 1 cut(s) 328
StyD4I CCNGG 1 cut(s) 16
TaaI ACNGT 3 cut(s) 103, 203, 503
TaiI ACGT 2 cut(s) 75, 533
TaqI TCGA 2 cut(s) 198, 253
TauI GCSGC 2 cut(s) 61, 64
TscAI CASTG 1 cut(s) 108
TspDTI ATGAA 1 cut(s) 364
TspRI CASTG 1 cut(s) 108
XspI CTAG 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.