MD00G1022200.v1.1

DCC family protein At1g52590

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0014125
Physical Location & Seq
Forward (+)
3807949 .. 3824497
16549 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1022200.v1.1.491

Sequence Viewer

Length: 558 bp
ATGGCGCTTCTGTTTCCCGGCGGTGGTTGGTGCGTACGACTACGAGTAGGCCACTCGTCGCGGCCGGCGCACGTTAGACCGAGCTTTGTTACCTTTGCTACAGTGTCCCCAAGGACCCCAGCCAAAGGCGACAGAGTGGACTGGGTGGAAGCAACTTCAGGCTTCTTTGAAAATGACACGAGGCCCATCATGTTGTTCGACGGTGTTTGTAACTTGTGTAATGGAGGTGTAAAGTTCGTGCGGGATAATGATCGAAATAGGAGCATAAGGTTTGAAGCTCTCCAGAGTGAAGCAGGGAAGAAACTGCTCAGAAGGTCCGGAAGAGCTCCTGATGATATTTCAAGTGTTGTTCTTGTTGAAAAGGATAGATCATTTATCAAGTCAGAAGCTGTTGTGAAGATAATGGAATATATAGACTTGCCCTTCCCCCAGCTAGCGTTTTTTGCACAGTTTATACCTCTTTTTGTAAGGGATTTTCTATACGACAATGTAGCAAACAACCGTTACACAATCTTTGGTCGCTCAGACACGTGGAATCATGGAGACTTTGATGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF393

Protein Analysis

186

Amino Acids

20.96

Weight (kDa)

8.88

Isoelectric Point (pI)

43.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DCC1-like PF04134 65 - 174 3.2e-26 DCC1-like thiol-disulfide oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52590
fragaria_vesca FvH4_6g30000
malus_domestica MD00G1022200.v1.1
prunus_persica Prupe.3G083500_v2.0.a1 Prupe.3G083500_v2.0.a1 Prupe.3G083500_v2.0.a1
pyrus_communis pycom17g21400
rosa_chinensis RchiOBHm_Chr2g0136021
rosa_laevigata RLG00000019497
rosa_multiflora Rmu_ssc0000343.1_g000029
rosa_roxburghii Rroxscaffold_2G00108690
rosa_rugosa Rorug02G0327700.1
rosa_samantha Rh2AG379400 Rh2BG385800 Rh2CG365000 Rh2DG402200
rosa_wichuraiana Rw2G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 61
AccIII TCCGGA 1 cut(s) 317
AciI CCGC 3 cut(s) 21, 61, 241
AcoI YGGCCR 1 cut(s) 62
AcuI CTGAAG 1 cut(s) 141
AcvI CACGTG 1 cut(s) 531
AfaI GTAC 1 cut(s) 36
AfiI CCNNNNNNNGG 2 cut(s) 23, 125
AflIII ACRYGT 1 cut(s) 528
AgsI TTSAA 4 cut(s) 170, 275, 342, 359
AluBI AGCT 5 cut(s) 84, 278, 326, 389, 433
AluI AGCT 5 cut(s) 84, 278, 326, 389, 433
Alw21I GWGCWC 1 cut(s) 328
Alw26I GTCTC 1 cut(s) 537
AlwNI CAGNNNCTG 1 cut(s) 389
Aor13HI TCCGGA 1 cut(s) 317
AoxI GGCC 3 cut(s) 49, 62, 182
AspLEI GCGC 2 cut(s) 7, 70
AspS9I GGNCC 3 cut(s) 114, 183, 315
AsuC2I CCSGG 1 cut(s) 18
AsuNHI GCTAGC 1 cut(s) 433
AvaII GGWCC 2 cut(s) 114, 315
BanII GRGCYC 1 cut(s) 328
BauI CACGAG 1 cut(s) 178
BbrPI CACGTG 1 cut(s) 531
Bbv12I GWGCWC 1 cut(s) 328
BccI CCATC 2 cut(s) 194, 545
BcnI CCSGG 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 537
BfaI CTAG 1 cut(s) 434
BfmI CTRYAG 1 cut(s) 99
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 1 cut(s) 62
BlsI GCNGC 1 cut(s) 63
Bme1390I CCNGG 1 cut(s) 18
Bme18I GGWCC 2 cut(s) 114, 315
BmgT120I GGNCC 3 cut(s) 114, 183, 315
BmiI GGNNCC 1 cut(s) 116
BmrFI CCNGG 1 cut(s) 18
BmrI ACTGGG 1 cut(s) 151
BmtI GCTAGC 1 cut(s) 437
BmuI ACTGGG 1 cut(s) 151
BpmI CTGGAG 1 cut(s) 266
BpuMI CCSGG 1 cut(s) 18
BsaAI YACGTR 1 cut(s) 531
BsaBI GATNNNNATC 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 110
BsaWI WCCGGW 1 cut(s) 317
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 125
Bse118I RCCGGY 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 146
Bse8I GATNNNNATC 1 cut(s) 249
BseAI TCCGGA 1 cut(s) 317
BseDI CCNNGG 1 cut(s) 110
BseJI GATNNNNATC 1 cut(s) 249
BseLI CCNNNNNNNGG 2 cut(s) 23, 125
BseMII CTCAG 2 cut(s) 322, 537
BseNI ACTGG 1 cut(s) 146
BseX3I CGGCCG 1 cut(s) 62
BseYI CCCAGC 2 cut(s) 118, 429
Bsh1236I CGCG 1 cut(s) 61
Bsh1285I CGRYCG 1 cut(s) 65
BshFI GGCC 3 cut(s) 51, 64, 184
BsiEI CGRYCG 1 cut(s) 65
BsiHKAI GWGCWC 1 cut(s) 328
BsiSI CCGG 3 cut(s) 18, 65, 318
BsiWI CGTACG 1 cut(s) 34
BslFI GGGAC 1 cut(s) 91
BslI CCNNNNNNNGG 2 cut(s) 23, 125
BsmAI GTCTC 1 cut(s) 537
BsmFI GGGAC 1 cut(s) 91
BsnI GGCC 3 cut(s) 51, 64, 184
Bsp1286I GDGCHC 1 cut(s) 328
Bsp13I TCCGGA 1 cut(s) 317
Bsp143I GATC 2 cut(s) 250, 368
BspACI CCGC 3 cut(s) 21, 61, 241
BspANI GGCC 3 cut(s) 51, 64, 184
BspCNI CTCAG 2 cut(s) 321, 536
BspEI TCCGGA 1 cut(s) 317
BspFNI CGCG 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 116
BspOI GCTAGC 1 cut(s) 437
BspQI GCTCTTC 1 cut(s) 316
BsrFI RCCGGY 1 cut(s) 64
BsrI ACTGG 1 cut(s) 146
BssAI RCCGGY 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 110
BssMI GATC 2 cut(s) 250, 368
BssSI CACGAG 1 cut(s) 178
BssT1I CCWWGG 1 cut(s) 110
Bst2BI CACGAG 1 cut(s) 178
Bst4CI ACNGT 4 cut(s) 103, 203, 450, 503
Bst6I CTCTTC 1 cut(s) 316
BstBAI YACGTR 1 cut(s) 531
BstC8I GCNNGC 2 cut(s) 66, 435
BstDEI CTNAG 2 cut(s) 308, 523
BstFNI CGCG 1 cut(s) 61
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 70
BstKTI GATC 2 cut(s) 253, 371
BstMAI GTCTC 1 cut(s) 537
BstMBI GATC 2 cut(s) 250, 368
BstMCI CGRYCG 1 cut(s) 65
BstMWI GCNNNNNNNGC 2 cut(s) 67, 443
BstSCI CCNGG 1 cut(s) 16
BstSFI CTRYAG 1 cut(s) 99
BstUI CGCG 1 cut(s) 61
BstZI CGGCCG 1 cut(s) 62
BsuRI GGCC 3 cut(s) 51, 64, 184
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 2 cut(s) 66, 435
CaiI CAGNNNCTG 1 cut(s) 389
CfoI GCGC 2 cut(s) 7, 70
Cfr10I RCCGGY 1 cut(s) 64
Cfr13I GGNCC 3 cut(s) 114, 183, 315
Csp6I GTAC 1 cut(s) 35
CviAII CATG 2 cut(s) 190, 539
CviQI GTAC 1 cut(s) 35
DdeI CTNAG 2 cut(s) 308, 523
DpnI GATC 2 cut(s) 252, 370
DpnII GATC 2 cut(s) 250, 368
EaeI YGGCCR 1 cut(s) 62
EagI CGGCCG 1 cut(s) 62
Eam1104I CTCTTC 1 cut(s) 316
EarI CTCTTC 1 cut(s) 316
Ecl136II GAGCTC 1 cut(s) 326
EclXI CGGCCG 1 cut(s) 62
Eco130I CCWWGG 1 cut(s) 110
Eco24I GRGCYC 1 cut(s) 328
Eco47I GGWCC 2 cut(s) 114, 315
Eco52I CGGCCG 1 cut(s) 62
Eco53kI GAGCTC 1 cut(s) 326
Eco57I CTGAAG 1 cut(s) 141
Eco72I CACGTG 1 cut(s) 531
EcoICRI GAGCTC 1 cut(s) 326
EcoO109I RGGNCCY 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 110
EcoT38I GRGCYC 1 cut(s) 328
ErhI CCWWGG 1 cut(s) 110
FaeI CATG 2 cut(s) 193, 542
FaiI YATR 7 cut(s) 191, 266, 411, 413, 455, 481, 540
FaqI GGGAC 1 cut(s) 91
FatI CATG 2 cut(s) 189, 538
FauI CCCGC 1 cut(s) 234
Fnu4HI GCNGC 1 cut(s) 62
FriOI GRGCYC 1 cut(s) 328
Fsp4HI GCNGC 1 cut(s) 62
FspBI CTAG 1 cut(s) 434
GlaI GCGC 2 cut(s) 6, 69
GluI GCNGC 1 cut(s) 62
GsaI CCCAGC 2 cut(s) 122, 433
GsuI CTGGAG 1 cut(s) 266
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 3 cut(s) 51, 64, 184
HapII CCGG 3 cut(s) 18, 65, 318
HhaI GCGC 2 cut(s) 7, 70
Hin1II CATG 2 cut(s) 193, 542
Hin6I GCGC 2 cut(s) 5, 68
HinP1I GCGC 2 cut(s) 5, 68
HinfI GANTC 1 cut(s) 535
HpaII CCGG 3 cut(s) 18, 65, 318
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 3 cut(s) 311, 385, 526
Hpy188III TCNNGA 3 cut(s) 283, 318, 329
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 2 cut(s) 61, 203
HpyAV CCTTC 2 cut(s) 306, 433
HpyCH4III ACNGT 4 cut(s) 103, 203, 450, 503
HpyCH4IV ACGT 2 cut(s) 72, 530
HpyCH4V TGCA 1 cut(s) 446
HpyF10VI GCNNNNNNNGC 2 cut(s) 67, 443
HpyF3I CTNAG 2 cut(s) 308, 523
HpySE526I ACGT 2 cut(s) 72, 530
Hsp92II CATG 2 cut(s) 193, 542
HspAI GCGC 2 cut(s) 5, 68
Kpn2I TCCGGA 1 cut(s) 317
KroI GCCGGC 1 cut(s) 64
KroNI GCCGGC 1 cut(s) 66
Kzo9I GATC 2 cut(s) 250, 368
LguI GCTCTTC 1 cut(s) 316
LmnI GCTCC 2 cut(s) 261, 331
MaeI CTAG 1 cut(s) 434
MaeII ACGT 2 cut(s) 72, 530
MaeIII GTNAC 3 cut(s) 88, 209, 503
MalI GATC 2 cut(s) 252, 370
MboI GATC 2 cut(s) 250, 368
MboII GAAGA 3 cut(s) 310, 333, 409
MhlI GDGCHC 1 cut(s) 328
MnlI CCTC 3 cut(s) 174, 218, 468
MroI TCCGGA 1 cut(s) 317
MroNI GCCGGC 1 cut(s) 64
MspI CCGG 3 cut(s) 18, 65, 318
MspR9I CCNGG 1 cut(s) 18
MvnI CGCG 1 cut(s) 61
MwoI GCNNNNNNNGC 2 cut(s) 67, 443
NaeI GCCGGC 1 cut(s) 66
NciI CCSGG 1 cut(s) 18
NdeII GATC 2 cut(s) 250, 368
NgoMIV GCCGGC 1 cut(s) 64
NheI GCTAGC 1 cut(s) 433
NlaIII CATG 2 cut(s) 193, 542
NlaIV GGNNCC 1 cut(s) 116
PciSI GCTCTTC 1 cut(s) 316
PdiI GCCGGC 1 cut(s) 66
PfeI GAWTC 1 cut(s) 535
Pfl23II CGTACG 1 cut(s) 34
PkrI GCNGC 1 cut(s) 63
PmaCI CACGTG 1 cut(s) 531
PmlI CACGTG 1 cut(s) 531
Ppu21I YACGTR 1 cut(s) 531
PpuMI RGGWCCY 1 cut(s) 114
Psp124BI GAGCTC 1 cut(s) 328
Psp5II RGGWCCY 1 cut(s) 114
PspCI CACGTG 1 cut(s) 531
PspFI CCCAGC 2 cut(s) 118, 429
PspLI CGTACG 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 116
PspPI GGNCC 3 cut(s) 114, 183, 315
PspPPI RGGWCCY 1 cut(s) 114
PstNI CAGNNNCTG 1 cut(s) 389
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
SacI GAGCTC 1 cut(s) 328
SapI GCTCTTC 1 cut(s) 316
SatI GCNGC 1 cut(s) 62
Sau3AI GATC 2 cut(s) 250, 368
Sau96I GGNCC 3 cut(s) 114, 183, 315
ScrFI CCNGG 1 cut(s) 18
SduI GDGCHC 1 cut(s) 328
SfcI CTRYAG 1 cut(s) 99
SinI GGWCC 2 cut(s) 114, 315
SsiI CCGC 3 cut(s) 21, 61, 241
SspMI CTAG 1 cut(s) 434
SstI GAGCTC 1 cut(s) 328
StyD4I CCNGG 1 cut(s) 16
StyI CCWWGG 1 cut(s) 110
TaaI ACNGT 4 cut(s) 103, 203, 450, 503
TaiI ACGT 2 cut(s) 75, 533
TaqI TCGA 2 cut(s) 198, 253
TaqII GACCGA 1 cut(s) 94
TauI GCSGC 1 cut(s) 64
TfiI GAWTC 1 cut(s) 535
TscAI CASTG 1 cut(s) 108
TspRI CASTG 1 cut(s) 108
VpaK11BI GGWCC 2 cut(s) 114, 315
XspI CTAG 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.