Rroxscaffold_2G00108690

DCC family protein At1g52590

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014125
Physical Location & Seq
Forward (+)
32765026 .. 32767759
2734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00108690.1

Sequence Viewer

Length: 630 bp
ATGAAGCCACGTAAACCGAGCGCAAATCGAGTGACGCTCCCAAAATCTCAGTTTCATATAACAACCACCGGCGGGCGGCGAAGCCAGCCATCATCAGTTTCAATGGCGCTTCTGGTTCCTGGTGGGTTCGTACGAGTAAGACCTCTACGCTTGTCTCAGCCAGCGCACGTTAGACGAAAGCTCACTACTTTTGCTACTGTATCCTCAACCCGAGGAGATTCAGTGGACTGGGTTGAAGCAACTTCAAGCTTCTTTGAAGATGACACGAGGCCCATCATGTTATTTGACGGTGTTTGCAACTTGTGTAATGGAGGTGTAAAGTTCGTGCGTGATAATGATCGAAATAGGAGAATGAGATTTGAAGCTCTCCAGAGTGAAGCAGGGAGGAAGCTGCTACGAAGATCGGGAAGAGCTCCTGATGATATATCTAGTGTTGTGCTGGTTGAAAAGGATAGATCATTCATCAAGTCAGAAGCTGTTGTGAAGATAATGGAACATATAGACTTACCCTTCCCCCAGCTAGCATTCTTCGTACAGTTTGTACCTCTCTTCATACGGGATTTTGTATATGACAATGTTGCAAACAATCGTTACACAATTTTTGGTCGCTCAGAGTCGTGTGAGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF393

Protein Analysis

209

Amino Acids

23.73

Weight (kDa)

10.21

Isoelectric Point (pI)

61.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DCC1-like PF04134 94 - 203 1.3e-26 DCC1-like thiol-disulfide oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52590
fragaria_vesca FvH4_6g30000
malus_domestica MD00G1022200.v1.1
prunus_persica Prupe.3G083500_v2.0.a1 Prupe.3G083500_v2.0.a1 Prupe.3G083500_v2.0.a1
pyrus_communis pycom17g21400
rosa_chinensis RchiOBHm_Chr2g0136021
rosa_laevigata RLG00000019497
rosa_multiflora Rmu_ssc0000343.1_g000029
rosa_roxburghii Rroxscaffold_2G00108690
rosa_rugosa Rorug02G0327700.1
rosa_samantha Rh2AG379400 Rh2BG385800 Rh2CG365000 Rh2DG402200
rosa_wichuraiana Rw2G030920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 72, 76
AfaI GTAC 3 cut(s) 132, 534, 543
AfiI CCNNNNNNNGG 2 cut(s) 72, 75
AgsI TTSAA 6 cut(s) 102, 236, 246, 257, 362, 446
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 7 cut(s) 181, 249, 365, 391, 413, 476, 520
AluI AGCT 7 cut(s) 181, 249, 365, 391, 413, 476, 520
Alw21I GWGCWC 1 cut(s) 415
Alw26I GTCTC 1 cut(s) 159
AlwNI CAGNNNCTG 1 cut(s) 476
Ama87I CYCGRG 1 cut(s) 210
AoxI GGCC 1 cut(s) 269
ApeKI GCWGC 1 cut(s) 391
AspLEI GCGC 3 cut(s) 23, 109, 166
AspS9I GGNCC 1 cut(s) 270
AsuNHI GCTAGC 1 cut(s) 520
AvaI CYCGRG 1 cut(s) 210
BanII GRGCYC 1 cut(s) 415
BauI CACGAG 1 cut(s) 265
Bbv12I GWGCWC 1 cut(s) 415
BbvI GCAGC 1 cut(s) 378
BccI CCATC 2 cut(s) 97, 281
BciT130I CCWGG 1 cut(s) 120
BciVI GTATCC 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 159
BfaI CTAG 2 cut(s) 429, 521
BfoI RGCGCY 1 cut(s) 110
BfuI GTATCC 1 cut(s) 211
BisI GCNGC 2 cut(s) 77, 392
BlsI GCNGC 2 cut(s) 78, 393
Bme1390I CCNGG 1 cut(s) 120
BmeT110I CYCGRG 1 cut(s) 210
BmgT120I GGNCC 1 cut(s) 270
BmiI GGNNCC 1 cut(s) 117
BmrFI CCNGG 1 cut(s) 120
BmrI ACTGGG 1 cut(s) 238
BmtI GCTAGC 1 cut(s) 524
BmuI ACTGGG 1 cut(s) 238
BplI GAGNNNNNCTC 2 cut(s) 21, 53
BpmI CTGGAG 1 cut(s) 353
BsaAI YACGTR 1 cut(s) 11
BsaBI GATNNNNATC 1 cut(s) 336
BsaJI CCNNGG 1 cut(s) 211
BsaXI ACNNNNNCTCC 2 cut(s) 207, 237
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 75
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 233
Bse8I GATNNNNATC 1 cut(s) 336
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 211
BseJI GATNNNNATC 1 cut(s) 336
BseLI CCNNNNNNNGG 2 cut(s) 72, 75
BseMII CTCAG 3 cut(s) 62, 170, 624
BseNI ACTGG 1 cut(s) 233
BseRI GAGGAG 1 cut(s) 228
BseXI GCAGC 1 cut(s) 378
BseYI CCCAGC 1 cut(s) 516
BshFI GGCC 1 cut(s) 271
BsiHKAI GWGCWC 1 cut(s) 415
BsiHKCI CYCGRG 1 cut(s) 210
BsiSI CCGG 1 cut(s) 69
BsiWI CGTACG 1 cut(s) 130
BslI CCNNNNNNNGG 2 cut(s) 72, 75
BsmAI GTCTC 1 cut(s) 159
BsmI GAATGC 1 cut(s) 524
BsnI GGCC 1 cut(s) 271
BsoBI CYCGRG 1 cut(s) 210
Bsp1286I GDGCHC 1 cut(s) 415
Bsp143I GATC 3 cut(s) 337, 401, 455
BspACI CCGC 2 cut(s) 72, 76
BspANI GGCC 1 cut(s) 271
BspCNI CTCAG 3 cut(s) 61, 169, 623
BspLI GGNNCC 1 cut(s) 117
BspOI GCTAGC 1 cut(s) 524
BspQI GCTCTTC 1 cut(s) 403
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 1 cut(s) 233
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 211
BssMI GATC 3 cut(s) 337, 401, 455
BssSI CACGAG 1 cut(s) 265
Bst2BI CACGAG 1 cut(s) 265
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 3 cut(s) 199, 290, 537
Bst6I CTCTTC 2 cut(s) 403, 554
BstBAI YACGTR 1 cut(s) 11
BstC8I GCNNGC 4 cut(s) 74, 86, 162, 522
BstDEI CTNAG 3 cut(s) 48, 156, 610
BstH2I RGCGCY 1 cut(s) 110
BstHHI GCGC 3 cut(s) 23, 109, 166
BstKTI GATC 3 cut(s) 340, 404, 458
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 3 cut(s) 337, 401, 455
BstMWI GCNNNNNNNGC 1 cut(s) 85
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 118
BstV1I GCAGC 1 cut(s) 378
BsuI GTATCC 1 cut(s) 211
BsuRI GGCC 1 cut(s) 271
BtsIMutI CAGTG 1 cut(s) 228
Cac8I GCNNGC 4 cut(s) 74, 86, 162, 522
CaiI CAGNNNCTG 1 cut(s) 476
CfoI GCGC 3 cut(s) 23, 109, 166
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 270
CseI GACGC 1 cut(s) 43
Csp6I GTAC 3 cut(s) 131, 533, 542
CviAII CATG 1 cut(s) 277
CviQI GTAC 3 cut(s) 131, 533, 542
DdeI CTNAG 3 cut(s) 48, 156, 610
DpnI GATC 3 cut(s) 339, 403, 457
DpnII GATC 3 cut(s) 337, 401, 455
Eam1104I CTCTTC 2 cut(s) 403, 554
EarI CTCTTC 2 cut(s) 403, 554
Ecl136II GAGCTC 1 cut(s) 413
Eco24I GRGCYC 1 cut(s) 415
Eco53kI GAGCTC 1 cut(s) 413
Eco88I CYCGRG 1 cut(s) 210
EcoICRI GAGCTC 1 cut(s) 413
EcoRII CCWGG 1 cut(s) 118
EcoT38I GRGCYC 1 cut(s) 415
FaeI CATG 1 cut(s) 280
FatI CATG 1 cut(s) 276
FauI CCCGC 1 cut(s) 65
Fnu4HI GCNGC 2 cut(s) 77, 392
FriOI GRGCYC 1 cut(s) 415
Fsp4HI GCNGC 2 cut(s) 77, 392
FspBI CTAG 2 cut(s) 429, 521
GlaI GCGC 3 cut(s) 22, 108, 165
GluI GCNGC 2 cut(s) 77, 392
GsaI CCCAGC 1 cut(s) 520
GsuI CTGGAG 1 cut(s) 353
HaeII RGCGCY 1 cut(s) 110
HaeIII GGCC 1 cut(s) 271
HapII CCGG 1 cut(s) 69
HgaI GACGC 1 cut(s) 43
HhaI GCGC 3 cut(s) 23, 109, 166
Hin1II CATG 1 cut(s) 280
Hin6I GCGC 3 cut(s) 21, 107, 164
HinP1I GCGC 3 cut(s) 21, 107, 164
HindIII AAGCTT 1 cut(s) 247
HinfI GANTC 2 cut(s) 218, 614
HpaII CCGG 1 cut(s) 69
Hpy166II GTNNAC 2 cut(s) 14, 226
Hpy188I TCNGA 2 cut(s) 472, 613
Hpy188III TCNNGA 3 cut(s) 370, 405, 416
Hpy8I GTNNAC 2 cut(s) 14, 226
HpyAV CCTTC 1 cut(s) 520
HpyCH4III ACNGT 3 cut(s) 199, 290, 537
HpyCH4IV ACGT 2 cut(s) 10, 168
HpyCH4V TGCA 2 cut(s) 297, 581
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
HpyF3I CTNAG 3 cut(s) 48, 156, 610
HpySE526I ACGT 2 cut(s) 10, 168
Hsp92II CATG 1 cut(s) 280
HspAI GCGC 3 cut(s) 21, 107, 164
Kzo9I GATC 3 cut(s) 337, 401, 455
LguI GCTCTTC 1 cut(s) 403
LmnI GCTCC 2 cut(s) 42, 418
Lsp1109I GCAGC 1 cut(s) 378
MaeI CTAG 2 cut(s) 429, 521
MaeII ACGT 2 cut(s) 10, 168
MaeIII GTNAC 2 cut(s) 31, 590
MalI GATC 3 cut(s) 339, 403, 457
MboI GATC 3 cut(s) 337, 401, 455
MboII GAAGA 6 cut(s) 269, 411, 420, 496, 520, 541
MhlI GDGCHC 1 cut(s) 415
MluCI AATT 1 cut(s) 597
MlyI GAGTC 1 cut(s) 623
MnlI CCTC 7 cut(s) 153, 206, 214, 261, 305, 378, 555
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 120
Mva1269I GAATGC 1 cut(s) 524
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 85
NdeII GATC 3 cut(s) 337, 401, 455
NheI GCTAGC 1 cut(s) 520
NlaIII CATG 1 cut(s) 280
NlaIV GGNNCC 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 31
PciSI GCTCTTC 1 cut(s) 403
PctI GAATGC 1 cut(s) 524
PfeI GAWTC 1 cut(s) 218
Pfl23II CGTACG 1 cut(s) 130
PkrI GCNGC 2 cut(s) 78, 393
PleI GAGTC 1 cut(s) 622
PpsI GAGTC 1 cut(s) 622
Ppu21I YACGTR 1 cut(s) 11
Psp124BI GAGCTC 1 cut(s) 415
Psp6I CCWGG 1 cut(s) 118
PspFI CCCAGC 1 cut(s) 516
PspGI CCWGG 1 cut(s) 118
PspLI CGTACG 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 1 cut(s) 270
PstNI CAGNNNCTG 1 cut(s) 476
RsaI GTAC 3 cut(s) 132, 534, 543
RsaNI GTAC 3 cut(s) 131, 533, 542
SacI GAGCTC 1 cut(s) 415
SapI GCTCTTC 1 cut(s) 403
SatI GCNGC 2 cut(s) 77, 392
Sau3AI GATC 3 cut(s) 337, 401, 455
Sau96I GGNCC 1 cut(s) 270
SchI GAGTC 1 cut(s) 623
ScrFI CCNGG 1 cut(s) 120
SduI GDGCHC 1 cut(s) 415
SgrAI CRCCGGYG 1 cut(s) 68
Sse9I AATT 1 cut(s) 597
SsiI CCGC 2 cut(s) 72, 76
SspMI CTAG 2 cut(s) 429, 521
SstI GAGCTC 1 cut(s) 415
StyD4I CCNGG 1 cut(s) 118
TaaI ACNGT 3 cut(s) 199, 290, 537
TaiI ACGT 2 cut(s) 13, 171
TaqI TCGA 2 cut(s) 28, 340
TasI AATT 1 cut(s) 597
TauI GCSGC 1 cut(s) 79
TfiI GAWTC 1 cut(s) 218
TscAI CASTG 1 cut(s) 228
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 1 cut(s) 391
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 4 cut(s) 17, 44, 451, 541
TspRI CASTG 1 cut(s) 228
XspI CTAG 2 cut(s) 429, 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.