AT1G52680

late embryogenesis abundant

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015820
Physical Location & Seq
Reverse (-)
19618099 .. 19619026
928 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G52680.1

Sequence Viewer

Length: 345 bp
ATGTCGTCGAGCCAGCAGTTGAGCCACAGCGCCGGAGAAGTCACCGGTCAAGTTCAGCTGAAGAAGGAAGAGTACTTGAACAATGTATCACACGCAATGAACCAGAATGCTGATCATCACACCCACTCACAGTCACAGTTACACTCAGAGCATGATCAGAACAATCCTTCCCTAATTTCTCAAGCCTCTAGTGTCATCCAACAGACGGGTGGACAAGTGAAGAACATGGCACAAGGAGCAGCCGATGCTGTGAAGAACACTCTCGGGATGAGTCCGGCTACCAACAGCCCTAGCAGCCCGGCTGGCACGACCCGCTCGAACAAGCCCGGTTCCAAGATTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.0

Weight (kDa)

7.06

Isoelectric Point (pI)

55.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015820)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52680
fragaria_vesca FvH4_6g30370
malus_domestica MD09G1221300.v1.1 MD17G1204300.v1.1
prunus_persica Prupe.3G079800_v2.0.a1 Prupe.7G000200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0136681
rosa_laevigata RLG00000019560
rosa_multiflora Rmu_sc0006545.1_g000001
rosa_rugosa Rorug02G0332300
rosa_samantha Rh2AG383200 Rh2BG389900 Rh2CG369600 Rh2DG406500
rosa_wichuraiana Rw2G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 315
AciI CCGC 1 cut(s) 313
AcuI CTGAAG 1 cut(s) 80
AfaI GTAC 1 cut(s) 74
AfiI CCNNNNNNNGG 1 cut(s) 205
AgeI ACCGGT 1 cut(s) 44
AgsI TTSAA 1 cut(s) 79
AloI GAACNNNNNNTCC 2 cut(s) 152, 184
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
Ama87I CYCGRG 1 cut(s) 263
ApeKI GCWGC 2 cut(s) 239, 294
AsiGI ACCGGT 1 cut(s) 44
AspLEI GCGC 1 cut(s) 32
AsuC2I CCSGG 2 cut(s) 299, 327
AsuHPI GGTGA 1 cut(s) 34
AvaI CYCGRG 1 cut(s) 263
BarI GAAGNNNNNNTAC 2 cut(s) 56, 88
BbvI GCAGC 2 cut(s) 251, 306
BclI TGATCA 2 cut(s) 112, 154
BcnI CCSGG 2 cut(s) 299, 327
BfaI CTAG 2 cut(s) 189, 291
BfoI RGCGCY 1 cut(s) 33
BglI GCCNNNNNGGC 1 cut(s) 303
BisI GCNGC 2 cut(s) 240, 295
BlsI GCNGC 2 cut(s) 241, 296
BmcAI AGTACT 1 cut(s) 74
Bme1390I CCNGG 2 cut(s) 299, 327
BmeT110I CYCGRG 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 331
BmrFI CCNGG 2 cut(s) 299, 327
BmsI GCATC 1 cut(s) 235
BpuEI CTTGAG 1 cut(s) 165
BpuMI CCSGG 2 cut(s) 299, 327
BsaWI WCCGGW 1 cut(s) 44
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse118I RCCGGY 1 cut(s) 44
Bse3DI GCAATG 1 cut(s) 102
BseGI GGATG 2 cut(s) 195, 273
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMI GCAATG 1 cut(s) 102
BseMII CTCAG 1 cut(s) 159
BseXI GCAGC 2 cut(s) 251, 306
BshTI ACCGGT 1 cut(s) 44
BsiHKCI CYCGRG 1 cut(s) 263
BsiSI CCGG 5 cut(s) 33, 45, 275, 299, 327
BslI CCNNNNNNNGG 1 cut(s) 205
BsmI GAATGC 1 cut(s) 112
BsoBI CYCGRG 1 cut(s) 263
Bsp143I GATC 2 cut(s) 112, 154
BspACI CCGC 1 cut(s) 313
BspCNI CTCAG 1 cut(s) 158
BspLI GGNNCC 1 cut(s) 331
BsrBI CCGCTC 1 cut(s) 315
BsrDI GCAATG 1 cut(s) 102
BsrFI RCCGGY 1 cut(s) 44
BssAI RCCGGY 1 cut(s) 44
BssMI GATC 2 cut(s) 112, 154
Bst4CI ACNGT 2 cut(s) 132, 138
Bst6I CTCTTC 1 cut(s) 63
BstAPI GCANNNNNTGC 1 cut(s) 245
BstC8I GCNNGC 2 cut(s) 14, 304
BstDEI CTNAG 1 cut(s) 145
BstF5I GGATG 2 cut(s) 195, 273
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 2 cut(s) 115, 157
BstMBI GATC 2 cut(s) 112, 154
BstMWI GCNNNNNNNGC 5 cut(s) 236, 245, 294, 303, 312
BstSCI CCNGG 2 cut(s) 297, 325
BstV1I GCAGC 2 cut(s) 251, 306
BtsCI GGATG 2 cut(s) 195, 273
Cac8I GCNNGC 2 cut(s) 14, 304
CfoI GCGC 1 cut(s) 32
Cfr10I RCCGGY 1 cut(s) 44
Csp6I GTAC 1 cut(s) 73
CspAI ACCGGT 1 cut(s) 44
CviAII CATG 2 cut(s) 152, 226
CviQI GTAC 1 cut(s) 73
DdeI CTNAG 1 cut(s) 145
DpnI GATC 2 cut(s) 114, 156
DpnII GATC 2 cut(s) 112, 154
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco57I CTGAAG 1 cut(s) 80
Eco88I CYCGRG 1 cut(s) 263
FaeI CATG 2 cut(s) 155, 229
FaiI YATR 2 cut(s) 153, 227
FatI CATG 2 cut(s) 151, 225
FauI CCCGC 1 cut(s) 320
FbaI TGATCA 2 cut(s) 112, 154
Fnu4HI GCNGC 2 cut(s) 240, 295
FokI GGATG 2 cut(s) 182, 280
Fsp4HI GCNGC 2 cut(s) 240, 295
FspBI CTAG 2 cut(s) 189, 291
GlaI GCGC 1 cut(s) 31
GluI GCNGC 2 cut(s) 240, 295
HaeII RGCGCY 1 cut(s) 33
HapII CCGG 5 cut(s) 33, 45, 275, 299, 327
HhaI GCGC 1 cut(s) 32
Hin1II CATG 2 cut(s) 155, 229
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HinfI GANTC 1 cut(s) 271
HpaII CCGG 5 cut(s) 33, 45, 275, 299, 327
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 1 cut(s) 212
Hpy188I TCNGA 2 cut(s) 148, 159
Hpy188III TCNNGA 1 cut(s) 265
Hpy8I GTNNAC 1 cut(s) 212
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 58, 177
HpyCH4III ACNGT 2 cut(s) 132, 138
HpyF10VI GCNNNNNNNGC 5 cut(s) 236, 245, 294, 303, 312
HpyF3I CTNAG 1 cut(s) 145
Hsp92II CATG 2 cut(s) 155, 229
HspAI GCGC 1 cut(s) 30
Ksp22I TGATCA 2 cut(s) 112, 154
Kzo9I GATC 2 cut(s) 112, 154
LmnI GCTCC 1 cut(s) 236
LpnPI CCDG 8 cut(s) 26, 46, 58, 116, 288, 288, 312, 340
Lsp1109I GCAGC 2 cut(s) 251, 306
LweI GCATC 1 cut(s) 235
MaeI CTAG 2 cut(s) 189, 291
MaeIII GTNAC 3 cut(s) 40, 132, 138
MalI GATC 2 cut(s) 114, 156
MbiI CCGCTC 1 cut(s) 315
MboI GATC 2 cut(s) 112, 154
MboII GAAGA 4 cut(s) 73, 80, 232, 265
MluCI AATT 1 cut(s) 174
MlyI GAGTC 1 cut(s) 280
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 1 cut(s) 196
MspA1I CMGCKG 1 cut(s) 58
MspI CCGG 5 cut(s) 33, 45, 275, 299, 327
MspR9I CCNGG 2 cut(s) 299, 327
Mva1269I GAATGC 1 cut(s) 112
MwoI GCNNNNNNNGC 5 cut(s) 236, 245, 294, 303, 312
NciI CCSGG 2 cut(s) 299, 327
NdeII GATC 2 cut(s) 112, 154
NlaIII CATG 2 cut(s) 155, 229
NlaIV GGNNCC 1 cut(s) 331
NmuCI GTSAC 2 cut(s) 40, 132
PcsI WCGNNNNNNNCGW 1 cut(s) 314
PctI GAATGC 1 cut(s) 112
PinAI ACCGGT 1 cut(s) 44
PkrI GCNGC 2 cut(s) 241, 296
PleI GAGTC 1 cut(s) 279
PpsI GAGTC 1 cut(s) 279
PspN4I GGNNCC 1 cut(s) 331
PvuII CAGCTG 1 cut(s) 58
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
SatI GCNGC 2 cut(s) 240, 295
Sau3AI GATC 2 cut(s) 112, 154
ScaI AGTACT 1 cut(s) 74
SchI GAGTC 1 cut(s) 280
ScrFI CCNGG 2 cut(s) 299, 327
SetI ASST 1 cut(s) 60
SfaNI GCATC 1 cut(s) 235
SmlI CTYRAG 1 cut(s) 180
SmoI CTYRAG 1 cut(s) 180
Sse9I AATT 1 cut(s) 174
SsiI CCGC 1 cut(s) 313
SspMI CTAG 2 cut(s) 189, 291
StyD4I CCNGG 2 cut(s) 297, 325
TaaI ACNGT 2 cut(s) 132, 138
TaqI TCGA 2 cut(s) 8, 317
TasI AATT 1 cut(s) 174
TatI WGTACW 1 cut(s) 72
TseFI GTSAC 2 cut(s) 40, 132
TseI GCWGC 2 cut(s) 239, 294
Tsp45I GTSAC 2 cut(s) 40, 132
TspDTI ATGAA 1 cut(s) 113
XcmI CCANNNNNNNNNTGG 1 cut(s) 206
XspI CTAG 2 cut(s) 189, 291
ZrmI AGTACT 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.