FvH4_6g30370

late embryogenesis abundant

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015820
Physical Location & Seq
Reverse (-)
23440651 .. 23442499
1849 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g30370.t1

Sequence Viewer

Length: 669 bp
ATGGAGTGGTATATAGGGTTCGAAGAGGGTGAAGGTTGCCACGCTTGTCCTCCTCGGTTGACACATCATGTGGTACGTGCCGTCTTCCGGTCAGGTGATGATGAGGTCAACCGCTGCGTCGGTTTTAGCTTTGTACAGAGGATCACGACCATGTCTAAGGAATGGCAAGCCGCCAACCAGGACACCATGCCGACGACTTTAGCGGCCAAGCTCAGGTTGTCTGCGAAGAGGGATGAGATTCAGAACAAAGCATCAGAGACAGCTCATGCTGCCCAACACAAGGCATCTCAAGCATCTCAGGCTGCCCAAAACAAGGCAGGAGATGCTTCTAGCACTGCCCAAGATATCAAGGACCAAGCCTCCCACCTCCTTCAACAGGCATGCATGAAACTACTTAGCCCTACCTCTATTTTTCTATATCATATATCTGTTAATACATGTCATAACAATCTGCATAACTCACTGCAGACTGGAGAGCAAGTGAAAAGCATGGCTCAGGGAGCAGCTGAGGCAGTAAAGAACACTTTGGGAATGAATAATGCTAACCACCCAAACAATCCAAGCAACAACCCAAGCAATCCAAGCAACAACCCAAGCAACCCACACAACGCTAGCAACCTTAGCAACCCAAGCCACCCAAACAACCCAAGCAACAACCCAAGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

24.12

Weight (kDa)

7.77

Isoelectric Point (pI)

47.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015820)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52680
fragaria_vesca FvH4_6g30370
malus_domestica MD09G1221300.v1.1 MD17G1204300.v1.1
prunus_persica Prupe.3G079800_v2.0.a1 Prupe.7G000200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0136681
rosa_laevigata RLG00000019560
rosa_multiflora Rmu_sc0006545.1_g000001
rosa_rugosa Rorug02G0332300
rosa_samantha Rh2AG383200 Rh2BG389900 Rh2CG369600 Rh2DG406500
rosa_wichuraiana Rw2G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 112, 171, 203
AclWI GGATC 1 cut(s) 149
AcoI YGGCCR 1 cut(s) 204
AfaI GTAC 2 cut(s) 75, 135
AfiI CCNNNNNNNGG 5 cut(s) 87, 213, 280, 313, 376
AflIII ACRYGT 1 cut(s) 437
AgsI TTSAA 1 cut(s) 374
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 4 cut(s) 129, 211, 263, 506
AluI AGCT 4 cut(s) 129, 211, 263, 506
Alw26I GTCTC 1 cut(s) 251
AlwI GGATC 1 cut(s) 149
AoxI GGCC 1 cut(s) 204
ApeKI GCWGC 4 cut(s) 114, 269, 302, 503
AspS9I GGNCC 1 cut(s) 352
AsuHPI GGTGA 2 cut(s) 41, 107
AsuII TTCGAA 1 cut(s) 21
AsuNHI GCTAGC 1 cut(s) 611
AvaII GGWCC 1 cut(s) 352
BbsI GAAGAC 1 cut(s) 76
BbvCI CCTCAGC 1 cut(s) 507
BbvI GCAGC 4 cut(s) 101, 256, 289, 515
BceAI ACGGC 1 cut(s) 65
BciT130I CCWGG 1 cut(s) 179
BcoDI GTCTC 1 cut(s) 251
BfaI CTAG 2 cut(s) 330, 612
BfmI CTRYAG 1 cut(s) 464
BisI GCNGC 6 cut(s) 115, 171, 204, 270, 303, 504
BlsI GCNGC 6 cut(s) 116, 172, 205, 271, 304, 505
Bme1390I CCNGG 1 cut(s) 179
Bme18I GGWCC 1 cut(s) 352
BmgT120I GGNCC 1 cut(s) 352
BmrFI CCNGG 1 cut(s) 179
BmsI GCATC 4 cut(s) 260, 293, 302, 313
BmtI GCTAGC 1 cut(s) 615
BpiI GAAGAC 1 cut(s) 76
BpmI CTGGAG 1 cut(s) 492
Bpu10I CCTNAGC 4 cut(s) 212, 495, 507, 620
Bpu14I TTCGAA 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 273
BsaAI YACGTR 1 cut(s) 77
BsaJI CCNNGG 2 cut(s) 53, 659
BsaWI WCCGGW 1 cut(s) 87
BsaXI ACNNNNNCTCC 4 cut(s) 344, 374, 465, 495
Bsc4I CCNNNNNNNGG 5 cut(s) 87, 213, 280, 313, 376
Bse1I ACTGG 1 cut(s) 475
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 2 cut(s) 53, 659
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 5 cut(s) 87, 213, 280, 313, 376
BseMII CTCAG 4 cut(s) 226, 311, 498, 509
BseNI ACTGG 1 cut(s) 475
BseRI GAGGAG 1 cut(s) 42
BseXI GCAGC 4 cut(s) 101, 256, 289, 515
BshFI GGCC 1 cut(s) 206
BsiSI CCGG 1 cut(s) 88
BslI CCNNNNNNNGG 5 cut(s) 87, 213, 280, 313, 376
BsmAI GTCTC 1 cut(s) 251
BsnI GGCC 1 cut(s) 206
Bsp119I TTCGAA 1 cut(s) 21
Bsp1407I TGTACA 1 cut(s) 133
Bsp143I GATC 1 cut(s) 141
BspACI CCGC 3 cut(s) 112, 171, 203
BspANI GGCC 1 cut(s) 206
BspCNI CTCAG 4 cut(s) 225, 310, 499, 508
BspMAI CTGCAG 1 cut(s) 468
BspOI GCTAGC 1 cut(s) 615
BspPI GGATC 1 cut(s) 149
BspT104I TTCGAA 1 cut(s) 21
BsrGI TGTACA 1 cut(s) 133
BsrI ACTGG 1 cut(s) 475
BssECI CCNNGG 2 cut(s) 53, 659
BssMI GATC 1 cut(s) 141
BssT1I CCWWGG 1 cut(s) 659
Bst2UI CCWGG 1 cut(s) 179
Bst6I CTCTTC 2 cut(s) 18, 221
BstAPI GCANNNNNTGC 1 cut(s) 323
BstAUI TGTACA 1 cut(s) 133
BstBAI YACGTR 1 cut(s) 77
BstBI TTCGAA 1 cut(s) 21
BstC8I GCNNGC 3 cut(s) 168, 382, 613
BstDEI CTNAG 7 cut(s) 156, 212, 297, 395, 495, 507, 620
BstENI CCTNNNNNAGG 1 cut(s) 374
BstF5I GGATG 1 cut(s) 238
BstKTI GATC 1 cut(s) 144
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 1 cut(s) 141
BstMWI GCNNNNNNNGC 9 cut(s) 269, 290, 299, 323, 500, 509, 582, 621, 630
BstNI CCWGG 1 cut(s) 179
BstNSI RCATGY 2 cut(s) 384, 441
BstSCI CCNGG 1 cut(s) 177
BstSFI CTRYAG 1 cut(s) 464
BstV1I GCAGC 4 cut(s) 101, 256, 289, 515
BstV2I GAAGAC 1 cut(s) 76
BsuRI GGCC 1 cut(s) 206
BtsCI GGATG 1 cut(s) 238
BtsI GCAGTG 2 cut(s) 333, 461
BtsIMutI CAGTG 2 cut(s) 333, 461
Cac8I GCNNGC 3 cut(s) 168, 382, 613
Cfr13I GGNCC 1 cut(s) 352
CseI GACGC 1 cut(s) 106
Csp6I GTAC 2 cut(s) 74, 134
CviAII CATG 8 cut(s) 68, 151, 187, 266, 381, 385, 438, 490
CviQI GTAC 2 cut(s) 74, 134
DdeI CTNAG 7 cut(s) 156, 212, 297, 395, 495, 507, 620
DpnI GATC 1 cut(s) 143
DpnII GATC 1 cut(s) 141
EaeI YGGCCR 1 cut(s) 204
Eam1104I CTCTTC 2 cut(s) 18, 221
EarI CTCTTC 2 cut(s) 18, 221
Eco130I CCWWGG 1 cut(s) 659
Eco32I GATATC 1 cut(s) 346
Eco47I GGWCC 1 cut(s) 352
EcoNI CCTNNNNNAGG 1 cut(s) 374
EcoRII CCWGG 1 cut(s) 177
EcoRV GATATC 1 cut(s) 346
EcoT14I CCWWGG 1 cut(s) 659
EcoT22I ATGCAT 1 cut(s) 386
ErhI CCWWGG 1 cut(s) 659
FaeI CATG 8 cut(s) 71, 154, 190, 269, 384, 388, 441, 493
FatI CATG 8 cut(s) 67, 150, 186, 265, 380, 384, 437, 489
Fnu4HI GCNGC 6 cut(s) 115, 171, 204, 270, 303, 504
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 6 cut(s) 115, 171, 204, 270, 303, 504
FspBI CTAG 2 cut(s) 330, 612
GluI GCNGC 6 cut(s) 115, 171, 204, 270, 303, 504
GsuI CTGGAG 1 cut(s) 492
HaeIII GGCC 1 cut(s) 206
HapII CCGG 1 cut(s) 88
HgaI GACGC 1 cut(s) 106
Hin1II CATG 8 cut(s) 71, 154, 190, 269, 384, 388, 441, 493
HincII GTYRAC 2 cut(s) 60, 109
HindII GTYRAC 2 cut(s) 60, 109
HinfI GANTC 1 cut(s) 238
HpaII CCGG 1 cut(s) 88
HphI GGTGA 2 cut(s) 41, 107
Hpy166II GTNNAC 2 cut(s) 60, 109
Hpy188I TCNGA 2 cut(s) 243, 256
Hpy188III TCNNGA 1 cut(s) 145
Hpy8I GTNNAC 2 cut(s) 60, 109
Hpy99I CGWCG 2 cut(s) 122, 196
HpyAV CCTTC 2 cut(s) 26, 380
HpyCH4IV ACGT 1 cut(s) 76
HpyCH4V TGCA 3 cut(s) 384, 454, 466
HpyF10VI GCNNNNNNNGC 9 cut(s) 269, 290, 299, 323, 500, 509, 582, 621, 630
HpyF3I CTNAG 7 cut(s) 156, 212, 297, 395, 495, 507, 620
HpySE526I ACGT 1 cut(s) 76
Hsp92II CATG 8 cut(s) 71, 154, 190, 269, 384, 388, 441, 493
Kzo9I GATC 1 cut(s) 141
LmnI GCTCC 1 cut(s) 500
Lsp1109I GCAGC 4 cut(s) 101, 256, 289, 515
LweI GCATC 4 cut(s) 260, 293, 302, 313
MaeI CTAG 2 cut(s) 330, 612
MaeII ACGT 1 cut(s) 76
MalI GATC 1 cut(s) 143
MboI GATC 1 cut(s) 141
MboII GAAGA 3 cut(s) 35, 76, 238
Mph1103I ATGCAT 1 cut(s) 386
MseI TTAA 1 cut(s) 432
MslI CAYNNNNRTG 1 cut(s) 149
MspA1I CMGCKG 2 cut(s) 114, 506
MspI CCGG 1 cut(s) 88
MspR9I CCNGG 1 cut(s) 179
MvaI CCWGG 1 cut(s) 179
MwoI GCNNNNNNNGC 9 cut(s) 269, 290, 299, 323, 500, 509, 582, 621, 630
NdeII GATC 1 cut(s) 141
NheI GCTAGC 1 cut(s) 611
NlaIII CATG 8 cut(s) 71, 154, 190, 269, 384, 388, 441, 493
NsiI ATGCAT 1 cut(s) 386
NspI RCATGY 2 cut(s) 384, 441
NspV TTCGAA 1 cut(s) 21
PaeI GCATGC 1 cut(s) 384
PciI ACATGT 1 cut(s) 437
PfeI GAWTC 1 cut(s) 238
PflFI GACNNNGTC 1 cut(s) 151
PkrI GCNGC 6 cut(s) 116, 172, 205, 271, 304, 505
Ppu21I YACGTR 1 cut(s) 77
PscI ACATGT 1 cut(s) 437
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PspPI GGNCC 1 cut(s) 352
PsrI GAACNNNNNNTAC 1 cut(s) 34
PstI CTGCAG 1 cut(s) 468
PsyI GACNNNGTC 1 cut(s) 151
PvuII CAGCTG 1 cut(s) 506
RsaI GTAC 2 cut(s) 75, 135
RsaNI GTAC 2 cut(s) 74, 134
RseI CAYNNNNRTG 1 cut(s) 149
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 6 cut(s) 115, 171, 204, 270, 303, 504
Sau3AI GATC 1 cut(s) 141
Sau96I GGNCC 1 cut(s) 352
ScrFI CCNGG 1 cut(s) 179
SfaNI GCATC 4 cut(s) 260, 293, 302, 313
SfcI CTRYAG 1 cut(s) 464
SfuI TTCGAA 1 cut(s) 21
SinI GGWCC 1 cut(s) 352
SmiMI CAYNNNNRTG 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 288
SmoI CTYRAG 1 cut(s) 288
SphI GCATGC 1 cut(s) 384
SsiI CCGC 3 cut(s) 112, 171, 203
SspMI CTAG 2 cut(s) 330, 612
StyD4I CCNGG 1 cut(s) 177
StyI CCWWGG 1 cut(s) 659
TaiI ACGT 1 cut(s) 79
TaqI TCGA 1 cut(s) 21
TatI WGTACW 1 cut(s) 133
TauI GCSGC 2 cut(s) 173, 206
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TscAI CASTG 2 cut(s) 340, 468
TseI GCWGC 4 cut(s) 114, 269, 302, 503
TspDTI ATGAA 2 cut(s) 401, 548
TspRI CASTG 2 cut(s) 340, 468
Tth111I GACNNNGTC 1 cut(s) 151
VpaK11BI GGWCC 1 cut(s) 352
XagI CCTNNNNNAGG 1 cut(s) 374
XceI RCATGY 2 cut(s) 384, 441
XspI CTAG 2 cut(s) 330, 612
Zsp2I ATGCAT 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.