Prupe.7G000200_v2.0.a1

late embryogenesis abundant protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Reverse (-)
55631 .. 57235
1605 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G000200.1

Sequence Viewer

Length: 462 bp
ATGGCAAGCCACCAAAATCAGGATTTGAGTCACAAGGCAGGCGAGTTGACTGGTCAAGCTCAGGTAAAAAAAGACGAGTTTCTAAACCAGGCATCATATATGTCTCAATCTGTTCAGAATAAGGCATCAAATGCATCTCAGTCTGTCCAGAACAAGGCATCAAATGCATCTCAATCTACCCAGAACAAGGCATCAAATGCATCTCAGTCTGCCCAGAACAAGGCATCAGATGCATCTCACACTGCCCAAGACATCAAGGACCAAGCCACCCATCTCCTTCAACAGACAAGTGAGCAAGTGAAAAACATGGCTCAAGGAGCAGCTGAAACGGTTAAGAGCACTTTGGGAATGAACAATCCAAACGACCCAAACAGTAACCCAAGCAACGCAAACATGAACCCAAGCATCAACCCAATCAACCCAAGCAAGCCAAGCATTAACCCAAACAACCCAAGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.27

Weight (kDa)

8.97

Isoelectric Point (pI)

47.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015820)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52680
fragaria_vesca FvH4_6g30370
malus_domestica MD09G1221300.v1.1 MD17G1204300.v1.1
prunus_persica Prupe.3G079800_v2.0.a1 Prupe.7G000200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0136681
rosa_laevigata RLG00000019560
rosa_multiflora Rmu_sc0006545.1_g000001
rosa_rugosa Rorug02G0332300
rosa_samantha Rh2AG383200 Rh2BG389900 Rh2CG369600 Rh2DG406500
rosa_wichuraiana Rw2G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 4 cut(s) 19, 154, 187, 220
AgsI TTSAA 1 cut(s) 281
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 2 cut(s) 59, 323
AluI AGCT 2 cut(s) 59, 323
Alw21I GWGCWC 1 cut(s) 341
Alw26I GTCTC 1 cut(s) 108
ApeKI GCWGC 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 259
AvaII GGWCC 1 cut(s) 259
Bbv12I GWGCWC 1 cut(s) 341
BbvI GCAGC 1 cut(s) 332
BccI CCATC 1 cut(s) 279
BciT130I CCWGG 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 108
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
Bme1390I CCNGG 1 cut(s) 89
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 259
BmrFI CCNGG 1 cut(s) 89
Bpu10I CCTNAGC 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 297
BsaJI CCNNGG 1 cut(s) 452
Bsc4I CCNNNNNNNGG 4 cut(s) 19, 154, 187, 220
Bse1I ACTGG 1 cut(s) 55
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 452
BseLI CCNNNNNNNGG 4 cut(s) 19, 154, 187, 220
BseMII CTCAG 3 cut(s) 74, 152, 218
BseNI ACTGG 1 cut(s) 55
BseXI GCAGC 1 cut(s) 332
BsiHKAI GWGCWC 1 cut(s) 341
BslI CCNNNNNNNGG 4 cut(s) 19, 154, 187, 220
BsmAI GTCTC 1 cut(s) 108
Bsp1286I GDGCHC 1 cut(s) 341
BspCNI CTCAG 3 cut(s) 73, 151, 217
BsrI ACTGG 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 452
BssT1I CCWWGG 1 cut(s) 452
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 2 cut(s) 331, 374
BstAPI GCANNNNNTGC 4 cut(s) 131, 164, 197, 230
BstC8I GCNNGC 3 cut(s) 7, 40, 428
BstDEI CTNAG 3 cut(s) 60, 138, 204
BstMAI GTCTC 1 cut(s) 108
BstMWI GCNNNNNNNGC 6 cut(s) 131, 164, 197, 230, 317, 432
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 87
BstV1I GCAGC 1 cut(s) 332
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 1 cut(s) 240
Cac8I GCNNGC 3 cut(s) 7, 40, 428
Cfr13I GGNCC 1 cut(s) 259
CviAII CATG 2 cut(s) 307, 394
CviJI RGCY 6 cut(s) 9, 59, 266, 311, 323, 430
CviKI_1 RGCY 6 cut(s) 9, 59, 266, 311, 323, 430
DdeI CTNAG 3 cut(s) 60, 138, 204
Eco130I CCWWGG 1 cut(s) 452
Eco47I GGWCC 1 cut(s) 259
EcoRII CCWGG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 452
EcoT22I ATGCAT 4 cut(s) 136, 169, 202, 235
ErhI CCWWGG 1 cut(s) 452
FaeI CATG 2 cut(s) 310, 397
FaiI YATR 5 cut(s) 97, 99, 101, 308, 395
FatI CATG 2 cut(s) 306, 393
Fnu4HI GCNGC 1 cut(s) 321
Fsp4HI GCNGC 1 cut(s) 321
GluI GCNGC 1 cut(s) 321
Hin1II CATG 2 cut(s) 310, 397
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HinfI GANTC 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 48
Hpy188I TCNGA 2 cut(s) 117, 229
Hpy188III TCNNGA 2 cut(s) 20, 148
Hpy8I GTNNAC 1 cut(s) 48
HpyAV CCTTC 1 cut(s) 287
HpyCH4III ACNGT 2 cut(s) 331, 374
HpyCH4V TGCA 4 cut(s) 134, 167, 200, 233
HpyF10VI GCNNNNNNNGC 6 cut(s) 131, 164, 197, 230, 317, 432
HpyF3I CTNAG 3 cut(s) 60, 138, 204
Hsp92II CATG 2 cut(s) 310, 397
LmnI GCTCC 1 cut(s) 317
LpnPI CCDG 9 cut(s) 5, 24, 36, 47, 74, 101, 161, 194, 227
Lsp1109I GCAGC 1 cut(s) 332
MaeIII GTNAC 2 cut(s) 29, 374
MhlI GDGCHC 1 cut(s) 341
MlyI GAGTC 1 cut(s) 37
Mph1103I ATGCAT 4 cut(s) 136, 169, 202, 235
MseI TTAA 2 cut(s) 333, 438
MspA1I CMGCKG 1 cut(s) 323
MspR9I CCNGG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 89
MwoI GCNNNNNNNGC 6 cut(s) 131, 164, 197, 230, 317, 432
NlaIII CATG 2 cut(s) 310, 397
NmuCI GTSAC 1 cut(s) 29
NsiI ATGCAT 4 cut(s) 136, 169, 202, 235
PkrI GCNGC 1 cut(s) 322
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PspPI GGNCC 1 cut(s) 259
PvuII CAGCTG 1 cut(s) 323
SaqAI TTAA 2 cut(s) 333, 438
SatI GCNGC 1 cut(s) 321
Sau96I GGNCC 1 cut(s) 259
SchI GAGTC 1 cut(s) 37
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 1 cut(s) 341
SetI ASST 3 cut(s) 61, 66, 325
SinI GGWCC 1 cut(s) 259
SmlI CTYRAG 1 cut(s) 312
SmoI CTYRAG 1 cut(s) 312
StyD4I CCNGG 1 cut(s) 87
StyI CCWWGG 1 cut(s) 452
TaaI ACNGT 2 cut(s) 331, 374
Tru1I TTAA 2 cut(s) 333, 438
Tru9I TTAA 2 cut(s) 333, 438
TscAI CASTG 1 cut(s) 247
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 1 cut(s) 320
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 2 cut(s) 365, 410
TspRI CASTG 1 cut(s) 247
VpaK11BI GGWCC 1 cut(s) 259
Zsp2I ATGCAT 4 cut(s) 136, 169, 202, 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.