Rh2DG406500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0015820
Physical Location & Seq
Reverse (-)
59007245 .. 59009190
1946 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG406500.1

Sequence Viewer

Length: 303 bp
ATGGCAAGCCACCAACCAAGTCAGAATATTGGATACCAGGCCGGCGAATTGAGCGGCCAAGCTCAGGTGAAGAAGGATGAGCTTCAGAACAAGGCATCAGATGCATCCCAGGCTGTAAGGGACAAGGCATCAGATGCATCTCAGGCTGCCCAAAACAAGGCAGGAGGTGCTTCTAGCACTGCCCAAGATATCAAGGAGCAAGCCTCCCACCTCCTTCAACAGGCATGCAACAACTACCTCGTTGCCTCTACTTTTCTATATCATATATATCTGTTGATTCCATCACAATTTCGTACTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.74

Weight (kDa)

6.81

Isoelectric Point (pI)

54.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015820)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52680
fragaria_vesca FvH4_6g30370
malus_domestica MD09G1221300.v1.1 MD17G1204300.v1.1
prunus_persica Prupe.3G079800_v2.0.a1 Prupe.7G000200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0136681
rosa_laevigata RLG00000019560
rosa_multiflora Rmu_sc0006545.1_g000001
rosa_rugosa Rorug02G0332300
rosa_samantha Rh2AG383200 Rh2BG389900 Rh2CG369600 Rh2DG406500
rosa_wichuraiana Rw2G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 54
AciI CCGC 1 cut(s) 54
AcoI YGGCCR 1 cut(s) 55
AcuI CTGAAG 1 cut(s) 68
AfaI GTAC 1 cut(s) 295
AfiI CCNNNNNNNGG 3 cut(s) 64, 157, 220
AgsI TTSAA 1 cut(s) 218
AjnI CCWGG 2 cut(s) 36, 108
AluBI AGCT 2 cut(s) 62, 82
AluI AGCT 2 cut(s) 62, 82
AoxI GGCC 2 cut(s) 39, 55
ApeKI GCWGC 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 79
BbvI GCAGC 1 cut(s) 133
BccI CCATC 1 cut(s) 289
BciT130I CCWGG 2 cut(s) 38, 110
BciVI GTATCC 1 cut(s) 26
BfaI CTAG 1 cut(s) 174
BfuI GTATCC 1 cut(s) 26
BisI GCNGC 2 cut(s) 55, 147
BlsI GCNGC 2 cut(s) 56, 148
Bme1390I CCNGG 2 cut(s) 38, 110
BmrFI CCNGG 2 cut(s) 38, 110
BmsI GCATC 6 cut(s) 91, 104, 113, 124, 137, 146
BplI GAGNNNNNCTC 2 cut(s) 188, 220
Bpu10I CCTNAGC 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 108
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 157, 220
Bse118I RCCGGY 1 cut(s) 41
BseBI CCWGG 2 cut(s) 38, 110
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 2 cut(s) 82, 104
BseLI CCNNNNNNNGG 3 cut(s) 64, 157, 220
BseMII CTCAG 2 cut(s) 77, 155
BseXI GCAGC 1 cut(s) 133
BshFI GGCC 2 cut(s) 41, 57
BsiSI CCGG 1 cut(s) 42
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 3 cut(s) 64, 157, 220
BsmFI GGGAC 1 cut(s) 134
BsnI GGCC 2 cut(s) 41, 57
BspACI CCGC 1 cut(s) 54
BspANI GGCC 2 cut(s) 41, 57
BspCNI CTCAG 2 cut(s) 76, 154
BsrBI CCGCTC 1 cut(s) 54
BsrFI RCCGGY 1 cut(s) 41
BssAI RCCGGY 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 108
Bst2UI CCWGG 2 cut(s) 38, 110
Bst4CI ACNGT 1 cut(s) 298
BstAPI GCANNNNNTGC 3 cut(s) 101, 134, 167
BstC8I GCNNGC 4 cut(s) 7, 43, 201, 226
BstDEI CTNAG 2 cut(s) 63, 141
BstENI CCTNNNNNAGG 1 cut(s) 218
BstF5I GGATG 2 cut(s) 82, 104
BstMWI GCNNNNNNNGC 6 cut(s) 51, 101, 110, 134, 143, 167
BstNI CCWGG 2 cut(s) 38, 110
BstNSI RCATGY 1 cut(s) 228
BstSCI CCNGG 2 cut(s) 36, 108
BstV1I GCAGC 1 cut(s) 133
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 2 cut(s) 41, 57
BtsCI GGATG 2 cut(s) 82, 104
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 4 cut(s) 7, 43, 201, 226
Cfr10I RCCGGY 1 cut(s) 41
Csp6I GTAC 1 cut(s) 294
CviAII CATG 1 cut(s) 225
CviJI RGCY 8 cut(s) 9, 41, 57, 62, 82, 113, 146, 203
CviKI_1 RGCY 8 cut(s) 9, 41, 57, 62, 82, 113, 146, 203
CviQI GTAC 1 cut(s) 294
DdeI CTNAG 2 cut(s) 63, 141
EaeI YGGCCR 1 cut(s) 55
Eco32I GATATC 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 68
EcoNI CCTNNNNNAGG 1 cut(s) 218
EcoRII CCWGG 2 cut(s) 36, 108
EcoRV GATATC 1 cut(s) 190
EcoT22I ATGCAT 2 cut(s) 106, 139
FaeI CATG 1 cut(s) 228
FaiI YATR 6 cut(s) 226, 259, 264, 266, 268, 301
FaqI GGGAC 1 cut(s) 134
FatI CATG 1 cut(s) 224
Fnu4HI GCNGC 2 cut(s) 55, 147
FokI GGATG 2 cut(s) 89, 91
Fsp4HI GCNGC 2 cut(s) 55, 147
FspBI CTAG 1 cut(s) 174
GluI GCNGC 2 cut(s) 55, 147
HaeIII GGCC 2 cut(s) 41, 57
HapII CCGG 1 cut(s) 42
Hin1II CATG 1 cut(s) 228
HinfI GANTC 1 cut(s) 277
HpaII CCGG 1 cut(s) 42
HphI GGTGA 1 cut(s) 79
Hpy188I TCNGA 4 cut(s) 24, 87, 100, 133
HpyAV CCTTC 2 cut(s) 67, 224
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4V TGCA 3 cut(s) 104, 137, 228
HpyF10VI GCNNNNNNNGC 6 cut(s) 51, 101, 110, 134, 143, 167
HpyF3I CTNAG 2 cut(s) 63, 141
Hsp92II CATG 1 cut(s) 228
KroI GCCGGC 1 cut(s) 41
KroNI GCCGGC 1 cut(s) 43
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 9 cut(s) 23, 50, 50, 55, 95, 122, 128, 147, 206
Lsp1109I GCAGC 1 cut(s) 133
LweI GCATC 6 cut(s) 91, 104, 113, 124, 137, 146
MaeI CTAG 1 cut(s) 174
MbiI CCGCTC 1 cut(s) 54
MboII GAAGA 1 cut(s) 82
MluCI AATT 2 cut(s) 47, 287
MnlI CCTC 5 cut(s) 158, 214, 221, 248, 256
Mph1103I ATGCAT 2 cut(s) 106, 139
MroNI GCCGGC 1 cut(s) 41
MspI CCGG 1 cut(s) 42
MspR9I CCNGG 2 cut(s) 38, 110
MvaI CCWGG 2 cut(s) 38, 110
MwoI GCNNNNNNNGC 6 cut(s) 51, 101, 110, 134, 143, 167
NaeI GCCGGC 1 cut(s) 43
NgoMIV GCCGGC 1 cut(s) 41
NlaIII CATG 1 cut(s) 228
NsiI ATGCAT 2 cut(s) 106, 139
NspI RCATGY 1 cut(s) 228
PaeI GCATGC 1 cut(s) 228
PdiI GCCGGC 1 cut(s) 43
PfeI GAWTC 1 cut(s) 277
PkrI GCNGC 2 cut(s) 56, 148
Psp6I CCWGG 2 cut(s) 36, 108
PspGI CCWGG 2 cut(s) 36, 108
RsaI GTAC 1 cut(s) 295
RsaNI GTAC 1 cut(s) 294
SatI GCNGC 2 cut(s) 55, 147
ScrFI CCNGG 2 cut(s) 38, 110
SetI ASST 6 cut(s) 64, 69, 84, 169, 213, 240
SfaNI GCATC 6 cut(s) 91, 104, 113, 124, 137, 146
SphI GCATGC 1 cut(s) 228
Sse9I AATT 2 cut(s) 47, 287
SsiI CCGC 1 cut(s) 54
SspI AATATT 1 cut(s) 28
SspMI CTAG 1 cut(s) 174
StyD4I CCNGG 2 cut(s) 36, 108
TaaI ACNGT 1 cut(s) 298
TasI AATT 2 cut(s) 47, 287
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 1 cut(s) 277
TscAI CASTG 1 cut(s) 184
TseI GCWGC 1 cut(s) 146
TspRI CASTG 1 cut(s) 184
XagI CCTNNNNNAGG 1 cut(s) 218
XceI RCATGY 1 cut(s) 228
XspI CTAG 1 cut(s) 174
Zsp2I ATGCAT 2 cut(s) 106, 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.