MD17G1204300.v1.1

late embryogenesis abundant protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
24707745 .. 24709056
1312 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1204300.v1.1.491

Sequence Viewer

Length: 375 bp
ATGGCAAGCAACCAAAACCAGAATTTGAGTCACAAGGCTGGCGAGTTGACTGGTCAAGCTCAGGTTAAGAAGGATGAGCTTCTAAACCAGGCATCGGGTGCAGCTCAGTCCGCCCAAAACAAGGCATCAAATTTATCTCAGTCTGCCCAAAACAAGGCATCTGATGCATCTCGGTCTGCCCAGAACAAGGCATCTGATGAATCTCCTACTGACATCAAGGACCAAGCCACCCACCTCCTTCAACAGACAAGTGAGCAAGTGAGAAACATGGCTCAAGGAGCAGCTGATGCAGTCAAGAACACTTTGGGAATGAATAACCCTAACGACCCAAGCAACCAAAACAATACCCCAAGCAACCCAAGCACTAGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.07

Weight (kDa)

6.72

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015820)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52680
fragaria_vesca FvH4_6g30370
malus_domestica MD09G1221300.v1.1 MD17G1204300.v1.1
prunus_persica Prupe.3G079800_v2.0.a1 Prupe.7G000200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0136681
rosa_laevigata RLG00000019560
rosa_multiflora Rmu_sc0006545.1_g000001
rosa_rugosa Rorug02G0332300
rosa_samantha Rh2AG383200 Rh2BG389900 Rh2CG369600 Rh2DG406500
rosa_wichuraiana Rw2G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 111
AcsI RAATTY 2 cut(s) 22, 130
AfiI CCNNNNNNNGG 4 cut(s) 94, 121, 154, 187
AgsI TTSAA 1 cut(s) 242
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 4 cut(s) 59, 79, 104, 284
AluI AGCT 4 cut(s) 59, 79, 104, 284
ApeKI GCWGC 2 cut(s) 101, 281
ApoI RAATTY 2 cut(s) 22, 130
AspS9I GGNCC 1 cut(s) 220
AvaII GGWCC 1 cut(s) 220
BbvI GCAGC 2 cut(s) 113, 293
BciT130I CCWGG 1 cut(s) 89
BfaI CTAG 1 cut(s) 366
BisI GCNGC 2 cut(s) 102, 282
BlsI GCNGC 2 cut(s) 103, 283
Bme1390I CCNGG 1 cut(s) 89
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 220
BmrFI CCNGG 1 cut(s) 89
BmsI GCATC 7 cut(s) 101, 134, 154, 167, 176, 200, 277
Bpu10I CCTNAGC 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 258
Bsc4I CCNNNNNNNGG 4 cut(s) 94, 121, 154, 187
Bse1I ACTGG 1 cut(s) 55
BseBI CCWGG 1 cut(s) 89
BseGI GGATG 1 cut(s) 79
BseLI CCNNNNNNNGG 4 cut(s) 94, 121, 154, 187
BseMII CTCAG 3 cut(s) 74, 119, 152
BseNI ACTGG 1 cut(s) 55
BseXI GCAGC 2 cut(s) 113, 293
BsgI GTGCAG 1 cut(s) 120
BslI CCNNNNNNNGG 4 cut(s) 94, 121, 154, 187
BspACI CCGC 1 cut(s) 111
BspCNI CTCAG 3 cut(s) 73, 118, 151
BsrI ACTGG 1 cut(s) 55
Bst2UI CCWGG 1 cut(s) 89
BstAPI GCANNNNNTGC 3 cut(s) 98, 164, 287
BstC8I GCNNGC 2 cut(s) 7, 40
BstDEI CTNAG 3 cut(s) 60, 105, 138
BstF5I GGATG 1 cut(s) 79
BstMWI GCNNNNNNNGC 6 cut(s) 98, 110, 164, 278, 287, 360
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 87
BstV1I GCAGC 2 cut(s) 113, 293
BtsCI GGATG 1 cut(s) 79
Cac8I GCNNGC 2 cut(s) 7, 40
Cfr13I GGNCC 1 cut(s) 220
CviAII CATG 1 cut(s) 268
CviJI RGCY 7 cut(s) 38, 59, 79, 104, 227, 272, 284
CviKI_1 RGCY 7 cut(s) 38, 59, 79, 104, 227, 272, 284
DdeI CTNAG 3 cut(s) 60, 105, 138
EciI GGCGGA 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 220
EcoRII CCWGG 1 cut(s) 87
EcoT22I ATGCAT 1 cut(s) 169
FaeI CATG 1 cut(s) 271
FaiI YATR 1 cut(s) 269
FatI CATG 1 cut(s) 267
Fnu4HI GCNGC 2 cut(s) 102, 282
FokI GGATG 1 cut(s) 86
Fsp4HI GCNGC 2 cut(s) 102, 282
FspBI CTAG 1 cut(s) 366
GluI GCNGC 2 cut(s) 102, 282
Hin1II CATG 1 cut(s) 271
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HinfI GANTC 2 cut(s) 28, 200
Hpy166II GTNNAC 1 cut(s) 48
Hpy188I TCNGA 2 cut(s) 163, 196
Hpy188III TCNNGA 1 cut(s) 295
Hpy8I GTNNAC 1 cut(s) 48
HpyAV CCTTC 2 cut(s) 64, 248
HpyCH4V TGCA 3 cut(s) 101, 167, 290
HpyF10VI GCNNNNNNNGC 6 cut(s) 98, 110, 164, 278, 287, 360
HpyF3I CTNAG 3 cut(s) 60, 105, 138
Hsp92II CATG 1 cut(s) 271
LmnI GCTCC 1 cut(s) 278
LpnPI CCDG 7 cut(s) 24, 32, 36, 47, 74, 101, 194
Lsp1109I GCAGC 2 cut(s) 113, 293
LweI GCATC 7 cut(s) 101, 134, 154, 167, 176, 200, 277
MaeI CTAG 1 cut(s) 366
MaeIII GTNAC 1 cut(s) 29
MluCI AATT 2 cut(s) 22, 130
MlyI GAGTC 1 cut(s) 37
MnlI CCTC 1 cut(s) 245
Mph1103I ATGCAT 1 cut(s) 169
MseI TTAA 1 cut(s) 66
MspA1I CMGCKG 1 cut(s) 284
MspR9I CCNGG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 89
MwoI GCNNNNNNNGC 6 cut(s) 98, 110, 164, 278, 287, 360
NlaIII CATG 1 cut(s) 271
NmuCI GTSAC 1 cut(s) 29
NsiI ATGCAT 1 cut(s) 169
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 2 cut(s) 103, 283
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PspPI GGNCC 1 cut(s) 220
PvuII CAGCTG 1 cut(s) 284
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 2 cut(s) 102, 282
Sau96I GGNCC 1 cut(s) 220
SchI GAGTC 1 cut(s) 37
ScrFI CCNGG 1 cut(s) 89
SetI ASST 6 cut(s) 61, 66, 81, 106, 237, 286
SfaNI GCATC 7 cut(s) 101, 134, 154, 167, 176, 200, 277
SinI GGWCC 1 cut(s) 220
SmlI CTYRAG 1 cut(s) 273
SmoI CTYRAG 1 cut(s) 273
Sse9I AATT 2 cut(s) 22, 130
SsiI CCGC 1 cut(s) 111
SspMI CTAG 1 cut(s) 366
StyD4I CCNGG 1 cut(s) 87
TaqII GACCGA 1 cut(s) 162
TasI AATT 2 cut(s) 22, 130
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 2 cut(s) 101, 281
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 2 cut(s) 213, 326
VpaK11BI GGWCC 1 cut(s) 220
XapI RAATTY 2 cut(s) 22, 130
XspI CTAG 1 cut(s) 366
Zsp2I ATGCAT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.