Rorug02G0332300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0015820
Physical Location & Seq
Forward (+)
41190664 .. 41191427
764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0332300.1

Sequence Viewer

Length: 594 bp
ATGGCAGATCGACGTCGTCTATGGATTGATATCGCAGAAATTAAGAGTCGATTTGTCACAGGTTATATGGTGACTTTAATGCAGTTCTCGGTGCGCATGAGAAGAAAGGGGGTGCTCCAGTTTGTCGCCGCTCTTGTGAGGAGTTTTAGGCAATGTCAGATATTAGTGAACTGGTTCATGTGGACACCAAGGGTTCACAGTTCACTTGGGTGCGTCGACGTGGGTTCGCGATGTGGCTTGAGCATAAGGACTTCCATAGTCAAAAGGTGCTGGGTTTCTACAAGTACATTTGGTTGTCCGCTAACGGTCTTACAGCATAAGTTGCGTGTTTTGCGGAAATCCCTACGGTCTTGGAATTGGGAGGTTTTTGGTGATGTACATAGGCGGGTGGATGCACAGCTTGTGGAATTGGAGAATTTGCAGTCATCTATTTCTATGTCTGGGGGTTCAGATTTTGACTTTGCAAAGGAAGCTGAACTTCAAGCAAATTTATTAGAGTCGATGCGTTTACAGGAATCTCTTTGGCGTGAAAAGTCAAGAGTTAGATGGTTGTCTGAGGGGGACCGTAACTCTTCATTCTTTCATGGAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

22.98

Weight (kDa)

10.38

Isoelectric Point (pI)

57.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015820)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52680
fragaria_vesca FvH4_6g30370
malus_domestica MD09G1221300.v1.1 MD17G1204300.v1.1
prunus_persica Prupe.3G079800_v2.0.a1 Prupe.7G000200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0136681
rosa_laevigata RLG00000019560
rosa_multiflora Rmu_sc0006545.1_g000001
rosa_rugosa Rorug02G0332300
rosa_samantha Rh2AG383200 Rh2BG389900 Rh2CG369600 Rh2DG406500
rosa_wichuraiana Rw2G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 16
Acc16I TGCGCA 1 cut(s) 95
AccBSI CCGCTC 1 cut(s) 131
AccI GTMKAC 1 cut(s) 216
AccII CGCG 1 cut(s) 229
AciI CCGC 4 cut(s) 129, 299, 334, 385
AcsI RAATTY 2 cut(s) 415, 487
AcyI GRCGYC 1 cut(s) 13
AfaI GTAC 2 cut(s) 286, 378
AgsI TTSAA 1 cut(s) 482
AjiI CACGTC 1 cut(s) 220
AleI CACNNNNGTG 1 cut(s) 208
AluBI AGCT 2 cut(s) 400, 473
AluI AGCT 2 cut(s) 400, 473
Alw21I GWGCWC 1 cut(s) 117
ApoI RAATTY 2 cut(s) 415, 487
Asp700I GAANNNNTTC 1 cut(s) 173
AspLEI GCGC 1 cut(s) 96
AspS9I GGNCC 1 cut(s) 562
AsuHPI GGTGA 2 cut(s) 82, 383
AvaII GGWCC 1 cut(s) 562
Bbv12I GWGCWC 1 cut(s) 117
BccI CCATC 1 cut(s) 540
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
Bme18I GGWCC 1 cut(s) 562
BmgBI CACGTC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 562
BmiI GGNNCC 1 cut(s) 563
BmsI GCATC 2 cut(s) 382, 492
BpmI CTGGAG 1 cut(s) 101
BpuEI CTTGAG 1 cut(s) 259
BsaBI GATNNNNATC 1 cut(s) 29
BsaHI GRCGYC 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 188
Bse1I ACTGG 2 cut(s) 118, 176
Bse3DI GCAATG 1 cut(s) 158
Bse8I GATNNNNATC 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 188
BseGI GGATG 1 cut(s) 397
BseJI GATNNNNATC 1 cut(s) 29
BseMI GCAATG 1 cut(s) 158
BseMII CTCAG 1 cut(s) 546
BseNI ACTGG 2 cut(s) 118, 176
BseRI GAGGAG 1 cut(s) 154
BseYI CCCAGC 1 cut(s) 270
Bsh1236I CGCG 1 cut(s) 229
BsiHKAI GWGCWC 1 cut(s) 117
BslFI GGGAC 1 cut(s) 575
BsmFI GGGAC 1 cut(s) 575
Bsp1286I GDGCHC 1 cut(s) 117
Bsp1407I TGTACA 1 cut(s) 376
Bsp143I GATC 1 cut(s) 7
Bsp68I TCGCGA 1 cut(s) 229
BspACI CCGC 4 cut(s) 129, 299, 334, 385
BspCNI CTCAG 1 cut(s) 547
BspFNI CGCG 1 cut(s) 229
BspLI GGNNCC 1 cut(s) 563
BsrBI CCGCTC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 158
BsrGI TGTACA 1 cut(s) 376
BsrI ACTGG 2 cut(s) 118, 176
BssECI CCNNGG 1 cut(s) 188
BssMI GATC 1 cut(s) 7
BssNI GRCGYC 1 cut(s) 13
BssT1I CCWWGG 1 cut(s) 188
Bst4CI ACNGT 4 cut(s) 200, 307, 348, 566
Bst6I CTCTTC 1 cut(s) 577
BstACI GRCGYC 1 cut(s) 13
BstAPI GCANNNNNTGC 1 cut(s) 322
BstAUI TGTACA 1 cut(s) 376
BstDEI CTNAG 1 cut(s) 555
BstF5I GGATG 1 cut(s) 397
BstFNI CGCG 1 cut(s) 229
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BstMWI GCNNNNNNNGC 3 cut(s) 322, 331, 470
BstUI CGCG 1 cut(s) 229
BtgZI GCGATG 1 cut(s) 244
BtrI CACGTC 1 cut(s) 220
BtsCI GGATG 1 cut(s) 397
BtuMI TCGCGA 1 cut(s) 229
CfoI GCGC 1 cut(s) 96
Cfr13I GGNCC 1 cut(s) 562
CseI GACGC 1 cut(s) 202
Csp6I GTAC 2 cut(s) 285, 377
CviAII CATG 3 cut(s) 97, 178, 584
CviJI RGCY 3 cut(s) 237, 400, 473
CviKI_1 RGCY 3 cut(s) 237, 400, 473
CviQI GTAC 2 cut(s) 285, 377
DdeI CTNAG 1 cut(s) 555
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
Eam1104I CTCTTC 1 cut(s) 577
EarI CTCTTC 1 cut(s) 577
Eco130I CCWWGG 1 cut(s) 188
Eco32I GATATC 1 cut(s) 31
Eco47I GGWCC 1 cut(s) 562
EcoRV GATATC 1 cut(s) 31
EcoT14I CCWWGG 1 cut(s) 188
ErhI CCWWGG 1 cut(s) 188
FaeI CATG 3 cut(s) 100, 181, 587
FalI AAGNNNNNCTT 2 cut(s) 462, 494
FaqI GGGAC 1 cut(s) 575
FatI CATG 3 cut(s) 96, 177, 583
FauI CCCGC 1 cut(s) 378
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 1 cut(s) 129
FokI GGATG 1 cut(s) 404
Fsp4HI GCNGC 1 cut(s) 129
FspAI RTGCGCAY 1 cut(s) 95
FspI TGCGCA 1 cut(s) 95
GlaI GCGC 1 cut(s) 95
GluI GCNGC 1 cut(s) 129
GsaI CCCAGC 1 cut(s) 274
GsuI CTGGAG 1 cut(s) 101
HgaI GACGC 1 cut(s) 202
HhaI GCGC 1 cut(s) 96
Hin1I GRCGYC 1 cut(s) 13
Hin1II CATG 3 cut(s) 100, 181, 587
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 3 cut(s) 46, 497, 515
HphI GGTGA 2 cut(s) 82, 383
Hpy166II GTNNAC 6 cut(s) 169, 183, 196, 203, 217, 509
Hpy188I TCNGA 3 cut(s) 159, 451, 556
Hpy188III TCNNGA 2 cut(s) 228, 537
Hpy8I GTNNAC 6 cut(s) 169, 183, 196, 203, 217, 509
Hpy99I CGWCG 4 cut(s) 15, 18, 218, 221
HpyCH4III ACNGT 4 cut(s) 200, 307, 348, 566
HpyCH4IV ACGT 2 cut(s) 13, 219
HpyCH4V TGCA 4 cut(s) 82, 395, 421, 464
HpyF10VI GCNNNNNNNGC 3 cut(s) 322, 331, 470
HpyF3I CTNAG 1 cut(s) 555
HpySE526I ACGT 2 cut(s) 13, 219
Hsp92I GRCGYC 1 cut(s) 13
Hsp92II CATG 3 cut(s) 100, 181, 587
HspAI GCGC 1 cut(s) 94
Kzo9I GATC 1 cut(s) 7
LmnI GCTCC 1 cut(s) 120
LpnPI CCDG 6 cut(s) 45, 131, 157, 256, 426, 497
LweI GCATC 2 cut(s) 382, 492
MaeII ACGT 2 cut(s) 13, 219
MaeIII GTNAC 3 cut(s) 55, 70, 566
MalI GATC 1 cut(s) 9
MbiI CCGCTC 1 cut(s) 131
MboI GATC 1 cut(s) 7
MboII GAAGA 2 cut(s) 114, 564
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 5 cut(s) 39, 355, 407, 415, 487
MlyI GAGTC 2 cut(s) 55, 506
MnlI CCTC 3 cut(s) 132, 355, 550
MroXI GAANNNNTTC 1 cut(s) 173
MseI TTAA 2 cut(s) 42, 77
MslI CAYNNNNRTG 1 cut(s) 208
MvnI CGCG 1 cut(s) 229
MwoI GCNNNNNNNGC 3 cut(s) 322, 331, 470
NdeII GATC 1 cut(s) 7
NlaIII CATG 3 cut(s) 100, 181, 587
NlaIV GGNNCC 1 cut(s) 563
NmuCI GTSAC 2 cut(s) 55, 70
NruI TCGCGA 1 cut(s) 229
NsbI TGCGCA 1 cut(s) 95
OliI CACNNNNGTG 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 173
PfeI GAWTC 1 cut(s) 515
PflFI GACNNNGTC 1 cut(s) 15
PkrI GCNGC 1 cut(s) 130
PleI GAGTC 2 cut(s) 54, 505
PpsI GAGTC 2 cut(s) 54, 505
PspFI CCCAGC 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 563
PspPI GGNCC 1 cut(s) 562
PsyI GACNNNGTC 1 cut(s) 15
RruI TCGCGA 1 cut(s) 229
RsaI GTAC 2 cut(s) 286, 378
RsaNI GTAC 2 cut(s) 285, 377
RseI CAYNNNNRTG 1 cut(s) 208
SalI GTCGAC 1 cut(s) 215
SaqAI TTAA 2 cut(s) 42, 77
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 1 cut(s) 7
Sau96I GGNCC 1 cut(s) 562
SchI GAGTC 2 cut(s) 55, 506
SduI GDGCHC 1 cut(s) 117
SetI ASST 7 cut(s) 16, 64, 222, 269, 366, 402, 475
SfaNI GCATC 2 cut(s) 382, 492
SgrDI CGTCGACG 1 cut(s) 215
SinI GGWCC 1 cut(s) 562
SmiMI CAYNNNNRTG 1 cut(s) 208
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
Sse9I AATT 5 cut(s) 39, 355, 407, 415, 487
SsiI CCGC 4 cut(s) 129, 299, 334, 385
StyI CCWWGG 1 cut(s) 188
TaaI ACNGT 4 cut(s) 200, 307, 348, 566
TaiI ACGT 2 cut(s) 16, 222
TaqI TCGA 4 cut(s) 10, 49, 216, 500
TasI AATT 5 cut(s) 39, 355, 407, 415, 487
TatI WGTACW 2 cut(s) 284, 376
TauI GCSGC 1 cut(s) 131
TfiI GAWTC 1 cut(s) 515
Tru1I TTAA 2 cut(s) 42, 77
Tru9I TTAA 2 cut(s) 42, 77
TseFI GTSAC 2 cut(s) 55, 70
Tsp45I GTSAC 2 cut(s) 55, 70
TspDTI ATGAA 3 cut(s) 166, 564, 572
Tth111I GACNNNGTC 1 cut(s) 15
VpaK11BI GGWCC 1 cut(s) 562
XapI RAATTY 2 cut(s) 415, 487
XmiI GTMKAC 1 cut(s) 216
XmnI GAANNNNTTC 1 cut(s) 173
ZraI GACGTC 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.