RLG00000019560

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0015820
Physical Location & Seq
Reverse (-)
53586031 .. 53586847
817 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019560

Sequence Viewer

Length: 390 bp
ATGGCAAGCCGCCAACCAGGTCAGAATATTGGATACCAGGCCGGCGAATTGAGCGGCCAAGTTCAGGTGAAGAAGGATGAGCTTCAGAACGAGGCATCAGATGCATCCCAGGCTGTAAGGGACAAGGCATCAGATGCATCTCAGGCTGCCCAAAACAAGGCAGGAGGTGCTTCTAGCACTGCCCAAGATATCAAGGAGCAAGCCTCCCACCTCCTTCAACAGACAGGAGAGCAGGTGAAAAGCATGGCTCAGGGGGCAGCTGACGTAGTCAAGAACACTCTGGGAATGAATAACCCTAACAACCCAAACAATCCAAGCAACAATCCAACCAATCCAAACAACCCTAGCAACCTTAGCCACCCAAGCAACCCAAACAACCCAAGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

13.5

Weight (kDa)

6.05

Isoelectric Point (pI)

29.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015820)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52680
fragaria_vesca FvH4_6g30370
malus_domestica MD09G1221300.v1.1 MD17G1204300.v1.1
prunus_persica Prupe.3G079800_v2.0.a1 Prupe.7G000200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0136681
rosa_laevigata RLG00000019560
rosa_multiflora Rmu_sc0006545.1_g000001
rosa_rugosa Rorug02G0332300
rosa_samantha Rh2AG383200 Rh2BG389900 Rh2CG369600 Rh2DG406500
rosa_wichuraiana Rw2G031320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 223
Acc36I ACCTGC 1 cut(s) 223
AccBSI CCGCTC 1 cut(s) 54
AciI CCGC 2 cut(s) 10, 54
AcoI YGGCCR 1 cut(s) 55
AcuI CTGAAG 1 cut(s) 68
AfiI CCNNNNNNNGG 2 cut(s) 64, 157
AgsI TTSAA 1 cut(s) 218
AjnI CCWGG 3 cut(s) 16, 36, 108
AluBI AGCT 2 cut(s) 82, 260
AluI AGCT 2 cut(s) 82, 260
AoxI GGCC 2 cut(s) 39, 55
ApeKI GCWGC 2 cut(s) 146, 257
AsuHPI GGTGA 2 cut(s) 79, 247
BbvI GCAGC 2 cut(s) 133, 269
BciT130I CCWGG 3 cut(s) 18, 38, 110
BciVI GTATCC 1 cut(s) 26
BfaI CTAG 2 cut(s) 174, 345
BfuAI ACCTGC 1 cut(s) 223
BfuI GTATCC 1 cut(s) 26
BisI GCNGC 4 cut(s) 10, 55, 147, 258
BlsI GCNGC 4 cut(s) 11, 56, 148, 259
Bme1390I CCNGG 3 cut(s) 18, 38, 110
BmrFI CCNGG 3 cut(s) 18, 38, 110
BmsI GCATC 6 cut(s) 91, 104, 113, 124, 137, 146
BplI GAGNNNNNCTC 2 cut(s) 188, 220
Bpu10I CCTNAGC 2 cut(s) 249, 353
BsaJI CCNNGG 2 cut(s) 108, 380
BsaXI ACNNNNNCTCC 2 cut(s) 219, 249
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 157
Bse118I RCCGGY 1 cut(s) 41
BseBI CCWGG 3 cut(s) 18, 38, 110
BseDI CCNNGG 2 cut(s) 108, 380
BseGI GGATG 2 cut(s) 82, 104
BseLI CCNNNNNNNGG 2 cut(s) 64, 157
BseMII CTCAG 2 cut(s) 155, 263
BseXI GCAGC 2 cut(s) 133, 269
BshFI GGCC 2 cut(s) 41, 57
BsiSI CCGG 1 cut(s) 42
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 2 cut(s) 64, 157
BsmFI GGGAC 1 cut(s) 134
BsnI GGCC 2 cut(s) 41, 57
BspACI CCGC 2 cut(s) 10, 54
BspANI GGCC 2 cut(s) 41, 57
BspCNI CTCAG 2 cut(s) 154, 262
BspMI ACCTGC 1 cut(s) 223
BsrBI CCGCTC 1 cut(s) 54
BsrFI RCCGGY 1 cut(s) 41
BssAI RCCGGY 1 cut(s) 41
BssECI CCNNGG 2 cut(s) 108, 380
BssT1I CCWWGG 1 cut(s) 380
Bst2UI CCWGG 3 cut(s) 18, 38, 110
BstAPI GCANNNNNTGC 3 cut(s) 101, 134, 167
BstC8I GCNNGC 3 cut(s) 7, 43, 201
BstDEI CTNAG 3 cut(s) 141, 249, 353
BstF5I GGATG 2 cut(s) 82, 104
BstMWI GCNNNNNNNGC 9 cut(s) 51, 101, 110, 134, 143, 167, 254, 354, 363
BstNI CCWGG 3 cut(s) 18, 38, 110
BstSCI CCNGG 3 cut(s) 16, 36, 108
BstV1I GCAGC 2 cut(s) 133, 269
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 2 cut(s) 41, 57
BtsCI GGATG 2 cut(s) 82, 104
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 177
BveI ACCTGC 1 cut(s) 223
Cac8I GCNNGC 3 cut(s) 7, 43, 201
Cfr10I RCCGGY 1 cut(s) 41
CsiI ACCWGGT 1 cut(s) 16
CviAII CATG 1 cut(s) 244
DdeI CTNAG 3 cut(s) 141, 249, 353
EaeI YGGCCR 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 380
Eco32I GATATC 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 68
EcoRII CCWGG 3 cut(s) 16, 36, 108
EcoRV GATATC 1 cut(s) 190
EcoT14I CCWWGG 1 cut(s) 380
EcoT22I ATGCAT 2 cut(s) 106, 139
ErhI CCWWGG 1 cut(s) 380
FaeI CATG 1 cut(s) 247
FaiI YATR 1 cut(s) 245
FaqI GGGAC 1 cut(s) 134
FatI CATG 1 cut(s) 243
Fnu4HI GCNGC 4 cut(s) 10, 55, 147, 258
FokI GGATG 2 cut(s) 89, 91
Fsp4HI GCNGC 4 cut(s) 10, 55, 147, 258
FspBI CTAG 2 cut(s) 174, 345
GluI GCNGC 4 cut(s) 10, 55, 147, 258
HaeIII GGCC 2 cut(s) 41, 57
HapII CCGG 1 cut(s) 42
Hin1II CATG 1 cut(s) 247
HpaII CCGG 1 cut(s) 42
HphI GGTGA 2 cut(s) 79, 247
Hpy188I TCNGA 4 cut(s) 24, 87, 100, 133
Hpy188III TCNNGA 1 cut(s) 271
HpyAV CCTTC 2 cut(s) 67, 224
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 2 cut(s) 104, 137
HpyF10VI GCNNNNNNNGC 9 cut(s) 51, 101, 110, 134, 143, 167, 254, 354, 363
HpyF3I CTNAG 3 cut(s) 141, 249, 353
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 1 cut(s) 247
KroI GCCGGC 1 cut(s) 41
KroNI GCCGGC 1 cut(s) 43
LmnI GCTCC 1 cut(s) 196
Lsp1109I GCAGC 2 cut(s) 133, 269
LweI GCATC 6 cut(s) 91, 104, 113, 124, 137, 146
MabI ACCWGGT 1 cut(s) 16
MaeI CTAG 2 cut(s) 174, 345
MaeII ACGT 1 cut(s) 264
MbiI CCGCTC 1 cut(s) 54
MboII GAAGA 1 cut(s) 82
MluCI AATT 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 350
MnlI CCTC 4 cut(s) 85, 158, 214, 221
Mph1103I ATGCAT 2 cut(s) 106, 139
MroNI GCCGGC 1 cut(s) 41
MspA1I CMGCKG 1 cut(s) 260
MspI CCGG 1 cut(s) 42
MspR9I CCNGG 3 cut(s) 18, 38, 110
MvaI CCWGG 3 cut(s) 18, 38, 110
MwoI GCNNNNNNNGC 9 cut(s) 51, 101, 110, 134, 143, 167, 254, 354, 363
NaeI GCCGGC 1 cut(s) 43
NgoMIV GCCGGC 1 cut(s) 41
NlaIII CATG 1 cut(s) 247
NsiI ATGCAT 2 cut(s) 106, 139
PaqCI CACCTGC 1 cut(s) 223
PdiI GCCGGC 1 cut(s) 43
PflFI GACNNNGTC 1 cut(s) 266
PkrI GCNGC 4 cut(s) 11, 56, 148, 259
Psp6I CCWGG 3 cut(s) 16, 36, 108
PspGI CCWGG 3 cut(s) 16, 36, 108
PsyI GACNNNGTC 1 cut(s) 266
PvuII CAGCTG 1 cut(s) 260
SatI GCNGC 4 cut(s) 10, 55, 147, 258
ScrFI CCNGG 3 cut(s) 18, 38, 110
SetI ASST 9 cut(s) 22, 69, 84, 169, 213, 237, 262, 267, 354
SexAI ACCWGGT 1 cut(s) 16
SfaNI GCATC 6 cut(s) 91, 104, 113, 124, 137, 146
Sse9I AATT 1 cut(s) 47
SsiI CCGC 2 cut(s) 10, 54
SspI AATATT 1 cut(s) 28
SspMI CTAG 2 cut(s) 174, 345
StyD4I CCNGG 3 cut(s) 16, 36, 108
StyI CCWWGG 1 cut(s) 380
TaiI ACGT 1 cut(s) 267
TasI AATT 1 cut(s) 47
TauI GCSGC 2 cut(s) 12, 57
TscAI CASTG 1 cut(s) 184
TseI GCWGC 2 cut(s) 146, 257
TspDTI ATGAA 1 cut(s) 302
TspRI CASTG 1 cut(s) 184
Tth111I GACNNNGTC 1 cut(s) 266
XspI CTAG 2 cut(s) 174, 345
Zsp2I ATGCAT 2 cut(s) 106, 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.