AT1G53650

Ataxin-2 C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009193
Physical Location & Seq
Reverse (-)
20028923 .. 20031619
2697 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G53650.1

Sequence Viewer

Length: 945 bp
ATGGCTGCGATCACTGAGATGGCCACTGATTCAAATGACGTAATCAACGATGGTGGAACTGGAGACGGAATTGAGAAGAGCACGGATTCTAAACCGGAAATCGAATCGGATGACCTCAAACCCAAATCCAAACCGGAATATGATCAAATGAAGAAGCTTGTTGCCATGTTCAAGAAACTCAATCCTGAAGCTAAGGAGTTTTTCCCTTCTTACAAGAGGAATACTAATCAGTCTGACGATTTTGTGATTGCTATAAAGCCATCTGGTGAAGACAACAAAAAGGTTGCCATTAACCGGAGGAGAAGAAACAACTATAACCAAGGGAGGAGAGTGAGGTTACCTGGAAGAGCTTCTAAGGCTCAAAGAGAAGATAGTATTAGAAGAACAGTGTATGTCTCTGACATTGATCAGAGTGTGACTGAGGAAGGCCTTGCTGGCTTGTTCAGCAGCTGTGGACAAGTTGTTGATTGTCGAATCTGCGGGGATCCGAATTCAGTTCTTCGCTTTGCGTTTGTTGAGTTTTCTGATGACCAAGGTGCACGATCGGCTTTAAGTCTTGGTGGAACAATGATCGGATATTACCCAGTTAGAGTCTTACCTTCAAAAACTGCTATTCTTCCAGTGAATCCCACATTTCTCCCCAGGTCAGAAGATGAAAGAGAGATGTGTTCAAGGACCATCTACTGCACAAATGTTGACAAGAATGCCACTGAAGATGATGTCAATACCTTCTTTCAGTCTGCCTGCGGTGAGGTTACTCGCTTAAGGCTTCTTGGTGACCAAGTGCATTCTACTCGCATAGCTTTTGTTGAATTTGCCATGGCAGAGAGTGCAGTTGCAGCGCTAAACTGCAGCGGAATAGTCTTAGGATCTCAGCCGATAAGGGTAAGCCCTTCAAAGACACCAGTGAGATCGCGAATCACTCGATCACCATCGCCAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAM2 RRM_1

Protein Analysis

314

Amino Acids

34.68

Weight (kDa)

8.1

Isoelectric Point (pI)

59.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 130 - 192 2.6e-11 RNA recognition motif
RRM_1 PF00076 227 - 295 2.9e-10 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 916
AciI CCGC 3 cut(s) 480, 747, 855
AclWI GGATC 3 cut(s) 479, 492, 877
AcoI YGGCCR 1 cut(s) 21
AcsI RAATTY 2 cut(s) 490, 812
AcuI CTGAAG 2 cut(s) 207, 732
AfeI AGCGCT 1 cut(s) 843
AfiI CCNNNNNNNGG 1 cut(s) 294
AflII CTTAAG 1 cut(s) 763
AgsI TTSAA 6 cut(s) 33, 172, 603, 672, 812, 897
AjnI CCWGG 2 cut(s) 340, 641
AluBI AGCT 5 cut(s) 157, 191, 350, 450, 803
AluI AGCT 5 cut(s) 157, 191, 350, 450, 803
Alw21I GWGCWC 2 cut(s) 83, 541
Alw26I GTCTC 2 cut(s) 57, 400
Alw44I GTGCAC 1 cut(s) 537
AlwI GGATC 3 cut(s) 479, 492, 877
AlwNI CAGNNNCTG 1 cut(s) 450
Aor51HI AGCGCT 1 cut(s) 843
AoxI GGCC 2 cut(s) 21, 427
ApaLI GTGCAC 1 cut(s) 537
ApeKI GCWGC 4 cut(s) 5, 447, 839, 852
ApoI RAATTY 2 cut(s) 490, 812
Asp700I GAANNNNTTC 1 cut(s) 349
AspLEI GCGC 1 cut(s) 844
AspS9I GGNCC 1 cut(s) 675
AsuHPI GGTGA 4 cut(s) 278, 761, 788, 921
AvaII GGWCC 1 cut(s) 675
BaeGI GKGCMC 1 cut(s) 541
BalI TGGCCA 1 cut(s) 23
BamHI GGATCC 1 cut(s) 484
BbsI GAAGAC 1 cut(s) 276
Bbv12I GWGCWC 2 cut(s) 83, 541
BbvI GCAGC 3 cut(s) 459, 851, 864
BccI CCATC 5 cut(s) 13, 44, 268, 686, 940
BcgI CGANNNNNNTGC 2 cut(s) 776, 810
BciT130I CCWGG 2 cut(s) 342, 643
BclI TGATCA 2 cut(s) 142, 406
BcoDI GTCTC 2 cut(s) 57, 400
BfaI CTAG 1 cut(s) 943
BfmI CTRYAG 1 cut(s) 850
BfoI RGCGCY 1 cut(s) 845
BfrI CTTAAG 1 cut(s) 763
BglI GCCNNNNNGGC 1 cut(s) 435
BisI GCNGC 4 cut(s) 6, 448, 840, 853
BlsI GCNGC 4 cut(s) 7, 449, 841, 854
Bme1390I CCNGG 2 cut(s) 342, 643
Bme18I GGWCC 1 cut(s) 675
BmgT120I GGNCC 1 cut(s) 675
BmiI GGNNCC 1 cut(s) 486
BmrFI CCNGG 2 cut(s) 342, 643
BmrI ACTGGG 1 cut(s) 578
BmuI ACTGGG 1 cut(s) 578
BpiI GAAGAC 1 cut(s) 276
BpmI CTGGAG 1 cut(s) 81
Bpu10I CCTNAGC 1 cut(s) 192
BsaBI GATNNNNATC 1 cut(s) 931
BsaJI CCNNGG 4 cut(s) 319, 532, 641, 819
BsaWI WCCGGW 3 cut(s) 94, 133, 294
Bsc4I CCNNNNNNNGG 1 cut(s) 294
Bse1I ACTGG 4 cut(s) 64, 584, 620, 905
Bse8I GATNNNNATC 1 cut(s) 931
BseBI CCWGG 2 cut(s) 342, 643
BseDI CCNNGG 4 cut(s) 319, 532, 641, 819
BseGI GGATG 1 cut(s) 115
BseJI GATNNNNATC 1 cut(s) 931
BseLI CCNNNNNNNGG 1 cut(s) 294
BseMII CTCAG 3 cut(s) 6, 411, 887
BseNI ACTGG 4 cut(s) 64, 584, 620, 905
BseRI GAGGAG 2 cut(s) 313, 340
BseSI GKGCMC 1 cut(s) 541
BseXI GCAGC 3 cut(s) 459, 851, 864
BsgI GTGCAG 2 cut(s) 670, 852
Bsh1236I CGCG 1 cut(s) 916
Bsh1285I CGRYCG 1 cut(s) 545
BshFI GGCC 2 cut(s) 23, 429
BsiEI CGRYCG 1 cut(s) 545
BsiHKAI GWGCWC 2 cut(s) 83, 541
BsiSI CCGG 3 cut(s) 95, 134, 295
BslI CCNNNNNNNGG 1 cut(s) 294
BsmAI GTCTC 2 cut(s) 57, 400
BsmBI CGTCTC 1 cut(s) 57
BsmI GAATGC 2 cut(s) 709, 787
BsnI GGCC 2 cut(s) 23, 429
Bsp1286I GDGCHC 2 cut(s) 83, 541
Bsp143I GATC 9 cut(s) 9, 142, 406, 484, 542, 570, 869, 911, 926
Bsp19I CCATGG 1 cut(s) 819
Bsp68I TCGCGA 1 cut(s) 916
BspACI CCGC 3 cut(s) 480, 747, 855
BspANI GGCC 2 cut(s) 23, 429
BspCNI CTCAG 3 cut(s) 7, 412, 886
BspFNI CGCG 1 cut(s) 916
BspLI GGNNCC 1 cut(s) 486
BspMAI CTGCAG 1 cut(s) 854
BspPI GGATC 3 cut(s) 479, 492, 877
BspQI GCTCTTC 2 cut(s) 71, 340
BspTI CTTAAG 1 cut(s) 763
BsrI ACTGG 4 cut(s) 64, 584, 620, 905
BssECI CCNNGG 4 cut(s) 319, 532, 641, 819
BssMI GATC 9 cut(s) 9, 142, 406, 484, 542, 570, 869, 911, 926
BssT1I CCWWGG 3 cut(s) 319, 532, 819
Bst2UI CCWGG 2 cut(s) 342, 643
Bst4CI ACNGT 1 cut(s) 388
Bst6I CTCTTC 2 cut(s) 71, 340
BstAFI CTTAAG 1 cut(s) 763
BstAPI GCANNNNNTGC 1 cut(s) 830
BstC8I GCNNGC 2 cut(s) 436, 745
BstDEI CTNAG 6 cut(s) 15, 192, 354, 420, 865, 873
BstDSI CCRYGG 1 cut(s) 819
BstEII GGTNACC 2 cut(s) 336, 776
BstF5I GGATG 1 cut(s) 115
BstFNI CGCG 1 cut(s) 916
BstH2I RGCGCY 1 cut(s) 845
BstHHI GCGC 1 cut(s) 844
BstKTI GATC 9 cut(s) 12, 145, 409, 487, 545, 573, 872, 914, 929
BstMAI GTCTC 2 cut(s) 57, 400
BstMBI GATC 9 cut(s) 9, 142, 406, 484, 542, 570, 869, 911, 926
BstMCI CGRYCG 1 cut(s) 545
BstMWI GCNNNNNNNGC 6 cut(s) 356, 435, 444, 545, 830, 839
BstNI CCWGG 2 cut(s) 342, 643
BstPI GGTNACC 2 cut(s) 336, 776
BstSCI CCNGG 2 cut(s) 340, 641
BstSFI CTRYAG 1 cut(s) 850
BstSLI GKGCMC 1 cut(s) 541
BstUI CGCG 1 cut(s) 916
BstV1I GCAGC 3 cut(s) 459, 851, 864
BstV2I GAAGAC 1 cut(s) 276
BstX2I RGATCY 2 cut(s) 484, 869
BstYI RGATCY 2 cut(s) 484, 869
BsuRI GGCC 2 cut(s) 23, 429
BtgI CCRYGG 1 cut(s) 819
BtgZI GCGATG 1 cut(s) 918
BtsCI GGATG 1 cut(s) 115
BtsIMutI CAGTG 6 cut(s) 12, 24, 393, 627, 708, 912
BtuMI TCGCGA 1 cut(s) 916
Cac8I GCNNGC 2 cut(s) 436, 745
CaiI CAGNNNCTG 1 cut(s) 450
CfoI GCGC 1 cut(s) 844
Cfr13I GGNCC 1 cut(s) 675
CspCI CAANNNNNGTGG 2 cut(s) 34, 69
CviAII CATG 2 cut(s) 166, 820
DdeI CTNAG 6 cut(s) 15, 192, 354, 420, 865, 873
DpnI GATC 9 cut(s) 11, 144, 408, 486, 544, 572, 871, 913, 928
DpnII GATC 9 cut(s) 9, 142, 406, 484, 542, 570, 869, 911, 926
EaeI YGGCCR 1 cut(s) 21
Eam1104I CTCTTC 2 cut(s) 71, 340
EarI CTCTTC 2 cut(s) 71, 340
Eco130I CCWWGG 3 cut(s) 319, 532, 819
Eco147I AGGCCT 1 cut(s) 429
Eco47I GGWCC 1 cut(s) 675
Eco47III AGCGCT 1 cut(s) 843
Eco57I CTGAAG 2 cut(s) 207, 732
Eco91I GGTNACC 2 cut(s) 336, 776
EcoO65I GGTNACC 2 cut(s) 336, 776
EcoRI GAATTC 1 cut(s) 490
EcoRII CCWGG 2 cut(s) 340, 641
EcoT14I CCWWGG 3 cut(s) 319, 532, 819
ErhI CCWWGG 3 cut(s) 319, 532, 819
Esp3I CGTCTC 1 cut(s) 57
FaeI CATG 2 cut(s) 169, 823
FaiI YATR 7 cut(s) 141, 167, 254, 315, 393, 800, 821
FatI CATG 2 cut(s) 165, 819
FauI CCCGC 1 cut(s) 473
FbaI TGATCA 2 cut(s) 142, 406
Fnu4HI GCNGC 4 cut(s) 6, 448, 840, 853
FokI GGATG 1 cut(s) 122
Fsp4HI GCNGC 4 cut(s) 6, 448, 840, 853
FspBI CTAG 1 cut(s) 943
GlaI GCGC 1 cut(s) 843
GluI GCNGC 4 cut(s) 6, 448, 840, 853
GsuI CTGGAG 1 cut(s) 81
HaeII RGCGCY 1 cut(s) 845
HaeIII GGCC 2 cut(s) 23, 429
HapII CCGG 3 cut(s) 95, 134, 295
HhaI GCGC 1 cut(s) 844
Hin1II CATG 2 cut(s) 169, 823
Hin6I GCGC 1 cut(s) 842
HinP1I GCGC 1 cut(s) 842
HincII GTYRAC 1 cut(s) 697
HindII GTYRAC 1 cut(s) 697
HindIII AAGCTT 1 cut(s) 155
HinfI GANTC 7 cut(s) 29, 86, 104, 474, 591, 625, 918
HpaII CCGG 3 cut(s) 95, 134, 295
HphI GGTGA 4 cut(s) 278, 761, 788, 921
Hpy166II GTNNAC 3 cut(s) 455, 539, 697
Hpy188I TCNGA 8 cut(s) 109, 235, 400, 411, 489, 526, 575, 649
Hpy188III TCNNGA 3 cut(s) 172, 185, 915
Hpy8I GTNNAC 3 cut(s) 455, 539, 697
HpyAV CCTTC 5 cut(s) 216, 419, 609, 739, 903
HpyCH4III ACNGT 1 cut(s) 388
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 6 cut(s) 539, 687, 787, 833, 839, 852
HpyF10VI GCNNNNNNNGC 6 cut(s) 356, 435, 444, 545, 830, 839
HpyF3I CTNAG 6 cut(s) 15, 192, 354, 420, 865, 873
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 2 cut(s) 169, 823
HspAI GCGC 1 cut(s) 842
Ksp22I TGATCA 2 cut(s) 142, 406
Kzo9I GATC 9 cut(s) 9, 142, 406, 484, 542, 570, 869, 911, 926
LguI GCTCTTC 2 cut(s) 71, 340
Lsp1109I GCAGC 3 cut(s) 459, 851, 864
MaeI CTAG 1 cut(s) 943
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 4 cut(s) 336, 415, 754, 776
MalI GATC 9 cut(s) 11, 144, 408, 486, 544, 572, 871, 913, 928
MboI GATC 9 cut(s) 9, 142, 406, 484, 542, 570, 869, 911, 926
MflI RGATCY 2 cut(s) 484, 869
MhlI GDGCHC 2 cut(s) 83, 541
MlsI TGGCCA 1 cut(s) 23
MluCI AATT 3 cut(s) 69, 490, 812
MluNI TGGCCA 1 cut(s) 23
MlyI GAGTC 1 cut(s) 600
MnlI CCTC 7 cut(s) 125, 210, 291, 318, 327, 415, 745
Mox20I TGGCCA 1 cut(s) 23
MroXI GAANNNNTTC 1 cut(s) 349
MscI TGGCCA 1 cut(s) 23
MseI TTAA 3 cut(s) 291, 551, 764
MslI CAYNNNNRTG 1 cut(s) 17
Msp20I TGGCCA 1 cut(s) 23
MspA1I CMGCKG 2 cut(s) 450, 855
MspCI CTTAAG 1 cut(s) 763
MspI CCGG 3 cut(s) 95, 134, 295
MspR9I CCNGG 2 cut(s) 342, 643
Mva1269I GAATGC 2 cut(s) 709, 787
MvaI CCWGG 2 cut(s) 342, 643
MvnI CGCG 1 cut(s) 916
MwoI GCNNNNNNNGC 6 cut(s) 356, 435, 444, 545, 830, 839
NcoI CCATGG 1 cut(s) 819
NdeII GATC 9 cut(s) 9, 142, 406, 484, 542, 570, 869, 911, 926
NlaIII CATG 2 cut(s) 169, 823
NlaIV GGNNCC 1 cut(s) 486
NmuCI GTSAC 2 cut(s) 415, 776
NruI TCGCGA 1 cut(s) 916
PceI AGGCCT 1 cut(s) 429
PciSI GCTCTTC 2 cut(s) 71, 340
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PctI GAATGC 2 cut(s) 709, 787
PdmI GAANNNNTTC 1 cut(s) 349
PfeI GAWTC 6 cut(s) 29, 86, 104, 474, 625, 918
PkrI GCNGC 4 cut(s) 7, 449, 841, 854
Ple19I CGATCG 1 cut(s) 545
PleI GAGTC 1 cut(s) 599
PpsI GAGTC 1 cut(s) 599
Psp6I CCWGG 2 cut(s) 340, 641
PspEI GGTNACC 2 cut(s) 336, 776
PspGI CCWGG 2 cut(s) 340, 641
PspN4I GGNNCC 1 cut(s) 486
PspPI GGNCC 1 cut(s) 675
PstI CTGCAG 1 cut(s) 854
PstNI CAGNNNCTG 1 cut(s) 450
PsuI RGATCY 2 cut(s) 484, 869
PvuI CGATCG 1 cut(s) 545
PvuII CAGCTG 1 cut(s) 450
RruI TCGCGA 1 cut(s) 916
RseI CAYNNNNRTG 1 cut(s) 17
SapI GCTCTTC 2 cut(s) 71, 340
SaqAI TTAA 3 cut(s) 291, 551, 764
SatI GCNGC 4 cut(s) 6, 448, 840, 853
Sau3AI GATC 9 cut(s) 9, 142, 406, 484, 542, 570, 869, 911, 926
Sau96I GGNCC 1 cut(s) 675
SchI GAGTC 1 cut(s) 600
ScrFI CCNGG 2 cut(s) 342, 643
SduI GDGCHC 2 cut(s) 83, 541
SfcI CTRYAG 1 cut(s) 850
SinI GGWCC 1 cut(s) 675
SmiMI CAYNNNNRTG 1 cut(s) 17
SmlI CTYRAG 1 cut(s) 763
SmoI CTYRAG 1 cut(s) 763
Sse9I AATT 3 cut(s) 69, 490, 812
SseBI AGGCCT 1 cut(s) 429
SsiI CCGC 3 cut(s) 480, 747, 855
SspMI CTAG 1 cut(s) 943
StuI AGGCCT 1 cut(s) 429
StyD4I CCNGG 2 cut(s) 340, 641
StyI CCWWGG 3 cut(s) 319, 532, 819
TaaI ACNGT 1 cut(s) 388
TaiI ACGT 1 cut(s) 42
TaqI TCGA 3 cut(s) 102, 472, 925
TasI AATT 3 cut(s) 69, 490, 812
TfiI GAWTC 6 cut(s) 29, 86, 104, 474, 625, 918
Tru1I TTAA 3 cut(s) 291, 551, 764
Tru9I TTAA 3 cut(s) 291, 551, 764
TscAI CASTG 6 cut(s) 19, 31, 393, 627, 715, 912
TseFI GTSAC 2 cut(s) 415, 776
TseI GCWGC 4 cut(s) 5, 447, 839, 852
Tsp45I GTSAC 2 cut(s) 415, 776
TspDTI ATGAA 2 cut(s) 164, 669
TspGWI ACGGA 2 cut(s) 81, 98
TspRI CASTG 6 cut(s) 19, 31, 393, 627, 715, 912
Vha464I CTTAAG 1 cut(s) 763
VneI GTGCAC 1 cut(s) 537
VpaK11BI GGWCC 1 cut(s) 675
XapI RAATTY 2 cut(s) 490, 812
XmnI GAANNNNTTC 1 cut(s) 349
XspI CTAG 1 cut(s) 943
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.