Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009193

Physical Location & Seq

Genomic Coordinates Forward (+)

20047892 .. 20052920

Gene Structure 5029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g16820.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGTAATCAGGCCAACAGTCGAAGGAGAACAAATAACTTTAATCAGGGGAAGAGAAGACTTAGTGGGAGAGCTTACAGAGCTGAGCGAGAAAATAGTATTAGGCGAACAGTATATGTTTCTGATATTGATCGAGCAAGTTACCGAAGAGCGTCTTGCTGCCATATTTAGTAGTTGCGGACAAGTTGTTGACTGCCGAATTTGTGGTGATCCGCATTCAGTGCTCCGTTTTGCATTTGTGGAGTTTGCTGATGAGTATGGTGCGAGAGCAGCTTTGAGCCTCGGTGGGACAATGCTAGGGTACTATCCTGTTAGGGTCTTACCCTCAAAAACTGCCATCCTTCCTGTGAATCCTACATTCCTCCCCAGGTCAGAAGATGAACGGGAAATGTGTAGCAGGACTGTATATTGTACAAATATCGATAAGAAGGTTGCTCAAGCTGATGTCAAGAATTTCTTTGAAACAGCTTGCGGTGAGGTTACTCGTTTGAGGCTTTTGGGGGATCATGTGCATTCAACTCGTATAGCTTTTGTTGAATTTGCAATGGCAGAAAGTGCTATACTTGCGCTGAATTGCAGCGGAATGGTGTTGGGAACACAACCCATCAGGGTAAGTCCTTCAAAGACACCTGTGAGGCCACGCGTTACCCGTCCATTGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2 RRM_1

Protein Analysis

221

Amino Acids

24.43

Weight (kDa)

5.87

Isoelectric Point (pI)

42.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53650 AT1G53650 AT3G14450
fragaria_vesca	FvH4_3g16680 FvH4_3g16680
malus_domestica	MD05G1208300.v1.1 MD10G1194800.v1.1
prunus_persica	Prupe.4G149200_v2.0.a1 Prupe.4G149200_v2.0.a1
pyrus_communis	pycom05g19400 pycom10g16820
rosa_chinensis	RchiOBHm_Chr5g0027791
rosa_laevigata	RLG00000033043
rosa_multiflora	Rmu_sc0000920.1_g000007
rosa_roxburghii	Rroxscaffold_1G00051820
rosa_rugosa	Rorug05G0101100 Rorug05G0101200
rosa_samantha	Rh5AG195400 Rh5BG193700 Rh5CG214000 Rh5DG195700
rosa_wichuraiana	Rw5G017830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	642
AciI	CCGC	4 cut(s)	177, 212, 471, 579
AclWI	GGATC	2 cut(s)	203, 510
AcsI	RAATTY	3 cut(s)	198, 451, 536
AfaI	GTAC	2 cut(s)	302, 412
AflIII	ACRYGT	1 cut(s)	640
AgsI	TTSAA	4 cut(s)	461, 516, 536, 621
AjnI	CCWGG	1 cut(s)	365
AluBI	AGCT	6 cut(s)	73, 82, 272, 440, 467, 527
AluI	AGCT	6 cut(s)	73, 82, 272, 440, 467, 527
Alw21I	GWGCWC	1 cut(s)	225
AlwI	GGATC	2 cut(s)	203, 510
AoxI	GGCC	2 cut(s)	11, 635
ApeKI	GCWGC	3 cut(s)	158, 269, 576
ApoI	RAATTY	3 cut(s)	198, 451, 536
AspLEI	GCGC	1 cut(s)	568
AsuHPI	GGTGA	2 cut(s)	218, 485
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	3 cut(s)	145, 281, 588
BccI	CCATC	2 cut(s)	344, 611
BcgI	CGANNNNNNTGC	2 cut(s)	500, 534
BciT130I	CCWGG	1 cut(s)	367
BfaI	CTAG	1 cut(s)	296
BisI	GCNGC	3 cut(s)	159, 270, 577
BlpI	GCTNAGC	1 cut(s)	83
BlsI	GCNGC	3 cut(s)	160, 271, 578
Bme1390I	CCNGG	1 cut(s)	367
BmrFI	CCNGG	1 cut(s)	367
BpiI	GAAGAC	1 cut(s)	63
Bpu1102I	GCTNAGC	1 cut(s)	83
BpuEI	CTTGAG	1 cut(s)	420
Bsa29I	ATCGAT	1 cut(s)	420
BsaBI	GATNNNNATC	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	280, 365
Bse3DI	GCAATG	2 cut(s)	549, 653
Bse8I	GATNNNNATC	1 cut(s)	128
BseBI	CCWGG	1 cut(s)	367
BseCI	ATCGAT	1 cut(s)	420
BseDI	CCNNGG	2 cut(s)	280, 365
BseGI	GGATG	1 cut(s)	336
BseJI	GATNNNNATC	1 cut(s)	128
BseMI	GCAATG	2 cut(s)	549, 653
BseMII	CTCAG	1 cut(s)	74
BseXI	GCAGC	3 cut(s)	145, 281, 588
Bsh1236I	CGCG	1 cut(s)	642
BshFI	GGCC	2 cut(s)	13, 637
BshVI	ATCGAT	1 cut(s)	420
BsiHKAI	GWGCWC	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	301
BsmI	GAATGC	2 cut(s)	214, 511
BsnI	GGCC	2 cut(s)	13, 637
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp1407I	TGTACA	1 cut(s)	410
Bsp143I	GATC	3 cut(s)	129, 208, 502
Bsp1720I	GCTNAGC	1 cut(s)	83
BspACI	CCGC	4 cut(s)	177, 212, 471, 579
BspANI	GGCC	2 cut(s)	13, 637
BspCNI	CTCAG	1 cut(s)	75
BspDI	ATCGAT	1 cut(s)	420
BspFNI	CGCG	1 cut(s)	642
BspPI	GGATC	2 cut(s)	203, 510
BspQI	GCTCTTC	1 cut(s)	141
BsrDI	GCAATG	2 cut(s)	549, 653
BsrGI	TGTACA	1 cut(s)	410
BssECI	CCNNGG	2 cut(s)	280, 365
BssMI	GATC	3 cut(s)	129, 208, 502
Bst2UI	CCWGG	1 cut(s)	367
Bst4CI	ACNGT	3 cut(s)	19, 111, 403
Bst6I	CTCTTC	2 cut(s)	46, 141
BstAPI	GCANNNNNTGC	2 cut(s)	220, 554
BstAUI	TGTACA	1 cut(s)	410
BstC8I	GCNNGC	1 cut(s)	469
BstDEI	CTNAG	2 cut(s)	61, 83
BstF5I	GGATG	1 cut(s)	336
BstFNI	CGCG	1 cut(s)	642
BstHHI	GCGC	1 cut(s)	568
BstKTI	GATC	3 cut(s)	132, 211, 505
BstMBI	GATC	3 cut(s)	129, 208, 502
BstMWI	GCNNNNNNNGC	5 cut(s)	79, 220, 269, 554, 563
BstNI	CCWGG	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	365
BstUI	CGCG	1 cut(s)	642
BstV1I	GCAGC	3 cut(s)	145, 281, 588
BstV2I	GAAGAC	1 cut(s)	63
Bsu15I	ATCGAT	1 cut(s)	420
BsuRI	GGCC	2 cut(s)	13, 637
BsuTUI	ATCGAT	1 cut(s)	420
BtsCI	GGATG	1 cut(s)	336
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	469
CfoI	GCGC	1 cut(s)	568
ClaI	ATCGAT	1 cut(s)	420
CseI	GACGC	1 cut(s)	140
Csp6I	GTAC	2 cut(s)	301, 411
CviAII	CATG	1 cut(s)	506
CviQI	GTAC	2 cut(s)	301, 411
DdeI	CTNAG	2 cut(s)	61, 83
DpnI	GATC	3 cut(s)	131, 210, 504
DpnII	GATC	3 cut(s)	129, 208, 502
Eam1104I	CTCTTC	2 cut(s)	46, 141
EarI	CTCTTC	2 cut(s)	46, 141
EcoRII	CCWGG	1 cut(s)	365
FaeI	CATG	1 cut(s)	509
FaiI	YATR	8 cut(s)	114, 116, 164, 258, 406, 507, 524, 560
FalI	AAGNNNNNCTT	4 cut(s)	138, 170, 440, 472
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	1 cut(s)	505
Fnu4HI	GCNGC	3 cut(s)	159, 270, 577
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	3 cut(s)	159, 270, 577
FspBI	CTAG	1 cut(s)	296
GlaI	GCGC	1 cut(s)	567
GluI	GCNGC	3 cut(s)	159, 270, 577
HaeIII	GGCC	2 cut(s)	13, 637
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	1 cut(s)	568
Hin1II	CATG	1 cut(s)	509
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	1 cut(s)	349
HphI	GGTGA	2 cut(s)	218, 485
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	2 cut(s)	123, 373
Hpy188III	TCNNGA	1 cut(s)	448
Hpy8I	GTNNAC	1 cut(s)	190
HpyAV	CCTTC	4 cut(s)	17, 350, 421, 627
HpyCH4III	ACNGT	3 cut(s)	19, 111, 403
HpyCH4V	TGCA	5 cut(s)	233, 511, 542, 576, 658
HpyF10VI	GCNNNNNNNGC	5 cut(s)	79, 220, 269, 554, 563
HpyF3I	CTNAG	2 cut(s)	61, 83
Hsp92II	CATG	1 cut(s)	509
HspAI	GCGC	1 cut(s)	566
Kzo9I	GATC	3 cut(s)	129, 208, 502
LguI	GCTCTTC	1 cut(s)	141
LmnI	GCTCC	1 cut(s)	228
LpnPI	CCDG	8 cut(s)	31, 321, 352, 357, 379, 382, 592, 642
Lsp1109I	GCAGC	3 cut(s)	145, 281, 588
MaeI	CTAG	1 cut(s)	296
MaeIII	GTNAC	3 cut(s)	139, 478, 643
MalI	GATC	3 cut(s)	131, 210, 504
MboI	GATC	3 cut(s)	129, 208, 502
MboII	GAAGA	4 cut(s)	63, 68, 158, 386
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	4 cut(s)	198, 451, 536, 571
MluI	ACGCGT	1 cut(s)	640
MnlI	CCTC	6 cut(s)	290, 334, 371, 469, 483, 627
MseI	TTAA	2 cut(s)	41, 661
MspA1I	CMGCKG	1 cut(s)	579
MspR9I	CCNGG	1 cut(s)	367
Mva1269I	GAATGC	2 cut(s)	214, 511
MvaI	CCWGG	1 cut(s)	367
MvnI	CGCG	1 cut(s)	642
MwoI	GCNNNNNNNGC	5 cut(s)	79, 220, 269, 554, 563
NdeII	GATC	3 cut(s)	129, 208, 502
NlaIII	CATG	1 cut(s)	509
PciSI	GCTCTTC	1 cut(s)	141
PcsI	WCGNNNNNNNCGW	1 cut(s)	646
PctI	GAATGC	2 cut(s)	214, 511
PfeI	GAWTC	1 cut(s)	349
PkrI	GCNGC	3 cut(s)	160, 271, 578
Psp6I	CCWGG	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	365
RsaI	GTAC	2 cut(s)	302, 412
RsaNI	GTAC	2 cut(s)	301, 411
SapI	GCTCTTC	1 cut(s)	141
SaqAI	TTAA	2 cut(s)	41, 661
SatI	GCNGC	3 cut(s)	159, 270, 577
Sau3AI	GATC	3 cut(s)	129, 208, 502
ScrFI	CCNGG	1 cut(s)	367
SduI	GDGCHC	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	435
SmoI	CTYRAG	1 cut(s)	435
Sse9I	AATT	4 cut(s)	198, 451, 536, 571
SsiI	CCGC	4 cut(s)	177, 212, 471, 579
SspMI	CTAG	1 cut(s)	296
StyD4I	CCNGG	1 cut(s)	365
TaaI	ACNGT	3 cut(s)	19, 111, 403
TaqI	TCGA	3 cut(s)	21, 132, 420
TasI	AATT	4 cut(s)	198, 451, 536, 571
TatI	WGTACW	1 cut(s)	410
TfiI	GAWTC	1 cut(s)	349
Tru1I	TTAA	2 cut(s)	41, 661
Tru9I	TTAA	2 cut(s)	41, 661
TscAI	CASTG	1 cut(s)	225
TseI	GCWGC	3 cut(s)	158, 269, 576
TspDTI	ATGAA	1 cut(s)	393
TspGWI	ACGGA	1 cut(s)	215
TspRI	CASTG	1 cut(s)	225
XapI	RAATTY	3 cut(s)	198, 451, 536
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.