Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009193

Physical Location & Seq

Genomic Coordinates Forward (+)

22340591 .. 22346452

Gene Structure 5862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g19400.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCTGCGGTTTCTGAGATTTCCGGTGAGGCAGCCTCTGCCAAAAACTCCAACTTGGATTCAATGTCAAAACCCATTTCTGAATCCAAATCAGAATTCGATGTGCAGAAGCTGGTGGATATGTTCACCAAGCTCAACCCTTTAGCCAAAGAGTTCTTCCCTTCATCTTATTCTCCCCAGCACCATTCCAATTTTGAAAACTCTGTCAATAACAATAAGCTCTCACCCAATGATAATCAGGCCAACATTCGAAGGAGAAGAAATAACTTTAATCAGGGGAAGCGAAGACTTAGTGGGAGAGCTTTCAGAGCTGAGCGGGAAAGTAATATTAGGCGAACAGTATATGTTTCTGATATTGATCAGCAAGTTACCGAAGAGCGTCTTGCTGCCATATTTAGTAGTTGCGGACAAGTTGTTGACTGCCGGATTTGTGGTGATCCGCATTCAGTACTCCGTTTTGCATTTGTGGAGTTTGCTGATGAGCATGGTGCAAGAGCCGCTTTGAGCCTTGGTGGGACTATGCTTGGGTACTATCCTGTCAGGGTCTTACCCTCAAAAACTGCCATCCTTCCTGTGAATCCTACATTCCTCCCCAGGTCAGAAGATGAGCGGGAAATGTGTAGCAGGACTGTGTATTGTACAAATATTGATAAGAAGGTTGCTCAAGCTGAAGTCAAGAATTTCTTTGAAACAGCTTGTGGTGAGGTTACTCGTTTGAGGCTTTTGGGGGATCATGTGCATTCAACTCGTATAGCTTTTGTTGAATTTGCAATGGCGGAAAGTGCTATACTTGCGCTCAATTGTAGCGGAATGGTGTTGGGAGCACAACCCATCAGGGTAAGTCCTTCAAAGACTCCTGTGAGACCACGCGTTACTCGTCCATTGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2 RRM_1

Protein Analysis

297

Amino Acids

32.98

Weight (kDa)

9.11

Isoelectric Point (pI)

52.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53650 AT1G53650 AT3G14450
fragaria_vesca	FvH4_3g16680 FvH4_3g16680
malus_domestica	MD05G1208300.v1.1 MD10G1194800.v1.1
prunus_persica	Prupe.4G149200_v2.0.a1 Prupe.4G149200_v2.0.a1
pyrus_communis	pycom05g19400 pycom10g16820
rosa_chinensis	RchiOBHm_Chr5g0027791
rosa_laevigata	RLG00000033043
rosa_multiflora	Rmu_sc0000920.1_g000007
rosa_roxburghii	Rroxscaffold_1G00051820
rosa_rugosa	Rorug05G0101100 Rorug05G0101200
rosa_samantha	Rh5AG195400 Rh5BG193700 Rh5CG214000 Rh5DG195700
rosa_wichuraiana	Rw5G017830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	316, 610
AccII	CGCG	1 cut(s)	870
AciI	CCGC	8 cut(s)	8, 316, 405, 440, 498, 610, 776, 807
AclWI	GGATC	2 cut(s)	431, 738
AcsI	RAATTY	3 cut(s)	95, 679, 764
AcuI	CTGAAG	1 cut(s)	690
AfaI	GTAC	3 cut(s)	450, 530, 640
AflIII	ACRYGT	1 cut(s)	868
AgsI	TTSAA	6 cut(s)	63, 197, 689, 744, 764, 849
AjnI	CCWGG	1 cut(s)	593
AjuI	GAANNNNNNNTTGG	4 cut(s)	80, 112, 140, 172
AluBI	AGCT	8 cut(s)	112, 133, 220, 302, 311, 668, 695, 755
AluI	AGCT	8 cut(s)	112, 133, 220, 302, 311, 668, 695, 755
Alw21I	GWGCWC	1 cut(s)	826
Alw26I	GTCTC	1 cut(s)	856
AlwI	GGATC	2 cut(s)	431, 738
AlwNI	CAGNNNCTG	2 cut(s)	38, 112
AoxI	GGCC	1 cut(s)	240
ApeKI	GCWGC	3 cut(s)	5, 32, 386
ApoI	RAATTY	3 cut(s)	95, 679, 764
AspLEI	GCGC	1 cut(s)	796
AsuHPI	GGTGA	5 cut(s)	38, 118, 216, 446, 713
AsuII	TTCGAA	1 cut(s)	250
BbsI	GAAGAC	1 cut(s)	292
Bbv12I	GWGCWC	1 cut(s)	826
BbvI	GCAGC	2 cut(s)	44, 373
BccI	CCATC	2 cut(s)	572, 839
BcgI	CGANNNNNNTGC	2 cut(s)	728, 762
BciT130I	CCWGG	1 cut(s)	595
BclI	TGATCA	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	856
BisI	GCNGC	4 cut(s)	6, 33, 387, 498
BlpI	GCTNAGC	1 cut(s)	312
BlsI	GCNGC	4 cut(s)	7, 34, 388, 499
BmcAI	AGTACT	1 cut(s)	450
Bme1390I	CCNGG	1 cut(s)	595
BmrFI	CCNGG	1 cut(s)	595
BpiI	GAAGAC	1 cut(s)	292
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
Bpu1102I	GCTNAGC	1 cut(s)	312
Bpu14I	TTCGAA	1 cut(s)	250
BpuEI	CTTGAG	1 cut(s)	648
BsaBI	GATNNNNATC	1 cut(s)	357
BsaI	GGTCTC	1 cut(s)	856
BsaJI	CCNNGG	2 cut(s)	508, 593
BsaWI	WCCGGW	1 cut(s)	23
Bse3DI	GCAATG	2 cut(s)	777, 881
Bse8I	GATNNNNATC	1 cut(s)	357
BseBI	CCWGG	1 cut(s)	595
BseDI	CCNNGG	2 cut(s)	508, 593
BseGI	GGATG	1 cut(s)	564
BseJI	GATNNNNATC	1 cut(s)	357
BseMI	GCAATG	2 cut(s)	777, 881
BseMII	CTCAG	2 cut(s)	6, 303
BseXI	GCAGC	2 cut(s)	44, 373
BseYI	CCCAGC	1 cut(s)	177
BsgI	GTGCAG	1 cut(s)	125
Bsh1236I	CGCG	1 cut(s)	870
BshFI	GGCC	1 cut(s)	242
BsiHKAI	GWGCWC	1 cut(s)	826
BsiSI	CCGG	2 cut(s)	24, 424
BslFI	GGGAC	1 cut(s)	529
BsmAI	GTCTC	1 cut(s)	856
BsmFI	GGGAC	1 cut(s)	529
BsmI	GAATGC	2 cut(s)	442, 739
BsnI	GGCC	1 cut(s)	242
Bso31I	GGTCTC	1 cut(s)	856
Bsp119I	TTCGAA	1 cut(s)	250
Bsp1286I	GDGCHC	1 cut(s)	826
Bsp1407I	TGTACA	1 cut(s)	638
Bsp143I	GATC	3 cut(s)	358, 436, 730
Bsp1720I	GCTNAGC	1 cut(s)	312
BspACI	CCGC	8 cut(s)	8, 316, 405, 440, 498, 610, 776, 807
BspANI	GGCC	1 cut(s)	242
BspCNI	CTCAG	2 cut(s)	7, 304
BspFNI	CGCG	1 cut(s)	870
BspPI	GGATC	2 cut(s)	431, 738
BspQI	GCTCTTC	1 cut(s)	369
BspT104I	TTCGAA	1 cut(s)	250
BspTNI	GGTCTC	1 cut(s)	856
BsrBI	CCGCTC	2 cut(s)	316, 610
BsrDI	GCAATG	2 cut(s)	777, 881
BsrGI	TGTACA	1 cut(s)	638
BssECI	CCNNGG	2 cut(s)	508, 593
BssMI	GATC	3 cut(s)	358, 436, 730
BssT1I	CCWWGG	1 cut(s)	508
Bst2UI	CCWGG	1 cut(s)	595
Bst4CI	ACNGT	2 cut(s)	340, 631
Bst6I	CTCTTC	1 cut(s)	369
BstAPI	GCANNNNNTGC	1 cut(s)	38
BstAUI	TGTACA	1 cut(s)	638
BstBI	TTCGAA	1 cut(s)	250
BstDEI	CTNAG	3 cut(s)	15, 290, 312
BstF5I	GGATG	1 cut(s)	564
BstFNI	CGCG	1 cut(s)	870
BstHHI	GCGC	1 cut(s)	796
BstKTI	GATC	3 cut(s)	361, 439, 733
BstMAI	GTCTC	1 cut(s)	856
BstMBI	GATC	3 cut(s)	358, 436, 730
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 308, 497, 782, 791
BstNI	CCWGG	1 cut(s)	595
BstSCI	CCNGG	1 cut(s)	593
BstUI	CGCG	1 cut(s)	870
BstV1I	GCAGC	2 cut(s)	44, 373
BstV2I	GAAGAC	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	242
BtsCI	GGATG	1 cut(s)	564
CaiI	CAGNNNCTG	2 cut(s)	38, 112
CfoI	GCGC	1 cut(s)	796
CseI	GACGC	1 cut(s)	368
Csp6I	GTAC	3 cut(s)	449, 529, 639
CviAII	CATG	2 cut(s)	485, 734
CviQI	GTAC	3 cut(s)	449, 529, 639
DdeI	CTNAG	3 cut(s)	15, 290, 312
DpnI	GATC	3 cut(s)	360, 438, 732
DpnII	GATC	3 cut(s)	358, 436, 730
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
EciI	GGCGGA	1 cut(s)	791
Eco130I	CCWWGG	1 cut(s)	508
Eco31I	GGTCTC	1 cut(s)	856
Eco57I	CTGAAG	1 cut(s)	690
EcoRI	GAATTC	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	593
EcoT14I	CCWWGG	1 cut(s)	508
ErhI	CCWWGG	1 cut(s)	508
FaeI	CATG	2 cut(s)	488, 737
FaiI	YATR	9 cut(s)	122, 343, 345, 392, 486, 521, 735, 752, 788
FalI	AAGNNNNNCTT	6 cut(s)	366, 398, 484, 516, 668, 700
FaqI	GGGAC	1 cut(s)	529
FatI	CATG	2 cut(s)	484, 733
FauI	CCCGC	2 cut(s)	309, 603
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	4 cut(s)	6, 33, 387, 498
FokI	GGATG	1 cut(s)	551
Fsp4HI	GCNGC	4 cut(s)	6, 33, 387, 498
GlaI	GCGC	1 cut(s)	795
GluI	GCNGC	4 cut(s)	6, 33, 387, 498
GsaI	CCCAGC	1 cut(s)	181
HaeIII	GGCC	1 cut(s)	242
HapII	CCGG	2 cut(s)	24, 424
HgaI	GACGC	1 cut(s)	368
HhaI	GCGC	1 cut(s)	796
Hin1II	CATG	2 cut(s)	488, 737
Hin6I	GCGC	1 cut(s)	794
HinP1I	GCGC	1 cut(s)	794
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HinfI	GANTC	4 cut(s)	59, 83, 577, 853
HpaII	CCGG	2 cut(s)	24, 424
HphI	GGTGA	5 cut(s)	38, 118, 216, 446, 713
Hpy166II	GTNNAC	2 cut(s)	126, 418
Hpy188I	TCNGA	6 cut(s)	16, 82, 94, 308, 352, 601
Hpy188III	TCNNGA	1 cut(s)	676
Hpy8I	GTNNAC	2 cut(s)	126, 418
HpyAV	CCTTC	5 cut(s)	171, 246, 578, 649, 855
HpyCH4III	ACNGT	2 cut(s)	340, 631
HpyCH4V	TGCA	6 cut(s)	106, 461, 491, 739, 770, 886
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 308, 497, 782, 791
HpyF3I	CTNAG	3 cut(s)	15, 290, 312
Hsp92II	CATG	2 cut(s)	488, 737
HspAI	GCGC	1 cut(s)	794
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	3 cut(s)	358, 436, 730
LguI	GCTCTTC	1 cut(s)	369
LmnI	GCTCC	1 cut(s)	821
Lsp1109I	GCAGC	2 cut(s)	44, 373
MaeIII	GTNAC	3 cut(s)	367, 706, 871
MalI	GATC	3 cut(s)	360, 438, 732
MbiI	CCGCTC	2 cut(s)	316, 610
MboI	GATC	3 cut(s)	358, 436, 730
MboII	GAAGA	5 cut(s)	148, 270, 297, 386, 614
MfeI	CAATTG	1 cut(s)	799
MhlI	GDGCHC	1 cut(s)	826
MluCI	AATT	5 cut(s)	95, 190, 679, 764, 799
MluI	ACGCGT	1 cut(s)	868
MlyI	GAGTC	1 cut(s)	847
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	6 cut(s)	22, 46, 562, 599, 697, 711
MseI	TTAA	2 cut(s)	270, 889
MspI	CCGG	2 cut(s)	24, 424
MspR9I	CCNGG	1 cut(s)	595
MunI	CAATTG	1 cut(s)	799
Mva1269I	GAATGC	2 cut(s)	442, 739
MvaI	CCWGG	1 cut(s)	595
MvnI	CGCG	1 cut(s)	870
MwoI	GCNNNNNNNGC	5 cut(s)	38, 308, 497, 782, 791
NdeII	GATC	3 cut(s)	358, 436, 730
NlaIII	CATG	2 cut(s)	488, 737
NspV	TTCGAA	1 cut(s)	250
PciSI	GCTCTTC	1 cut(s)	369
PcsI	WCGNNNNNNNCGW	1 cut(s)	874
PctI	GAATGC	2 cut(s)	442, 739
PfeI	GAWTC	3 cut(s)	59, 83, 577
PkrI	GCNGC	4 cut(s)	7, 34, 388, 499
PleI	GAGTC	1 cut(s)	847
PpsI	GAGTC	1 cut(s)	847
Psp6I	CCWGG	1 cut(s)	593
PspFI	CCCAGC	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	593
PstNI	CAGNNNCTG	2 cut(s)	38, 112
RsaI	GTAC	3 cut(s)	450, 530, 640
RsaNI	GTAC	3 cut(s)	449, 529, 639
SapI	GCTCTTC	1 cut(s)	369
SaqAI	TTAA	2 cut(s)	270, 889
SatI	GCNGC	4 cut(s)	6, 33, 387, 498
Sau3AI	GATC	3 cut(s)	358, 436, 730
ScaI	AGTACT	1 cut(s)	450
SchI	GAGTC	1 cut(s)	847
ScrFI	CCNGG	1 cut(s)	595
SduI	GDGCHC	1 cut(s)	826
SfuI	TTCGAA	1 cut(s)	250
SmlI	CTYRAG	1 cut(s)	663
SmoI	CTYRAG	1 cut(s)	663
Sse9I	AATT	5 cut(s)	95, 190, 679, 764, 799
SsiI	CCGC	8 cut(s)	8, 316, 405, 440, 498, 610, 776, 807
SspI	AATATT	2 cut(s)	328, 646
StyD4I	CCNGG	1 cut(s)	593
StyI	CCWWGG	1 cut(s)	508
TaaI	ACNGT	2 cut(s)	340, 631
TaqI	TCGA	2 cut(s)	99, 250
TasI	AATT	5 cut(s)	95, 190, 679, 764, 799
TatI	WGTACW	2 cut(s)	448, 638
TauI	GCSGC	1 cut(s)	500
TfiI	GAWTC	3 cut(s)	59, 83, 577
Tru1I	TTAA	2 cut(s)	270, 889
Tru9I	TTAA	2 cut(s)	270, 889
TseI	GCWGC	3 cut(s)	5, 32, 386
TspDTI	ATGAA	1 cut(s)	153
TspGWI	ACGGA	1 cut(s)	443
XapI	RAATTY	3 cut(s)	95, 679, 764
ZrmI	AGTACT	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.