Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0009193

Physical Location & Seq

Genomic Coordinates Reverse (-)

8518373 .. 8525886

Gene Structure 7514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G149200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCTGCGGTTGCTGAGATTTCCGGTGAGGCAGCCTCTGTCAAAAACTCAAACTTGGATTCAATGTCAAAACCCATGTCCGAATCCAAATCAGAATTTGATGTGCAGAAGCTGGTGGATATGTTCACCAAGCTGAACCCTTTAGCCAAAGAGTTTTTCCCTTCATCTTACTCTCACCACCAACATTCCAATTTTGACAACTCTTTGGCGGTCAATAACAATAAGCTCTCAGCCAATGATAATCTGGCCAATAATCGAAGGAGAAGAAATAGCTTTAATCAGGGGAAGAGAAGACTTAGTGGGAGAGCTTTCAGAGCTGAGCGGGAAAATAGTATTAGACGAACAGTATATGTTTCTGATATTGATCAGCAAGTTACCGAAGAGCGTCTTGCTGCCATATTTAGTAGTTGCGGACAAGTTGTTGACTGCCGAATTTGTGGTGATCCGCACTCCGTACTCCGTTTTGCATTTGTGGAGTTTGCTGATGAGCATGGTGCGAGAGCAGCTTTGAACCTTGGTGGGACAATGCTAGGGTACTATCCTGTTAGGGTCTTACCCTCAAAAACTGCCATCCTTCCTGTGAACCCTACATTCCTCCCTAGGTCAGAAGATGAACGGGAAATGTGTAGCAGGACTGTATATTGTACAAATATTGATAAGAAGGTTTCTCAAGCTGAAGTCAAGAATTTCTTTGAAACAGCTTGTGGTGAGGTTACTCGTTTGAGGCTTTTAGGAGATCATGTGCATTCAACTCGTATAGCTTTTGTTGAATTTGCAATGGGTAAGTCCTTCAAAGACACCTGTGCGGCCACGTGTTACTCGTCCATTGCATTAACCAATACCACCGGAAAAGATCTGTGGATGGAGCCTGGAGGGCTTTACGATCGGAGGAACTTTGTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2 RRM_1

Protein Analysis

302

Amino Acids

33.69

Weight (kDa)

8.58

Isoelectric Point (pI)

44.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53650 AT1G53650 AT3G14450
fragaria_vesca	FvH4_3g16680 FvH4_3g16680
malus_domestica	MD05G1208300.v1.1 MD10G1194800.v1.1
prunus_persica	Prupe.4G149200_v2.0.a1 Prupe.4G149200_v2.0.a1
pyrus_communis	pycom05g19400 pycom10g16820
rosa_chinensis	RchiOBHm_Chr5g0027791
rosa_laevigata	RLG00000033043
rosa_multiflora	Rmu_sc0000920.1_g000007
rosa_roxburghii	Rroxscaffold_1G00051820
rosa_rugosa	Rorug05G0101100 Rorug05G0101200
rosa_samantha	Rh5AG195400 Rh5BG193700 Rh5CG214000 Rh5DG195700
rosa_wichuraiana	Rw5G017830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	322
AciI	CCGC	6 cut(s)	8, 209, 322, 411, 446, 806
AclWI	GGATC	1 cut(s)	437
AcoI	YGGCCR	2 cut(s)	246, 807
AcsI	RAATTY	4 cut(s)	95, 432, 685, 770
AcuI	CTGAAG	1 cut(s)	696
AcvI	CACGTG	1 cut(s)	813
AfaI	GTAC	3 cut(s)	456, 536, 646
AflIII	ACRYGT	1 cut(s)	812
AgsI	TTSAA	6 cut(s)	63, 511, 695, 750, 770, 793
AjnI	CCWGG	1 cut(s)	868
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AlwI	GGATC	1 cut(s)	437
AlwNI	CAGNNNCTG	2 cut(s)	38, 112
AoxI	GGCC	2 cut(s)	246, 807
ApeKI	GCWGC	4 cut(s)	5, 32, 392, 503
ApoI	RAATTY	4 cut(s)	95, 432, 685, 770
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
AspA2I	CCTAGG	1 cut(s)	599
AsuHPI	GGTGA	5 cut(s)	38, 118, 167, 452, 719
AvrII	CCTAGG	1 cut(s)	599
BalI	TGGCCA	1 cut(s)	248
BbrPI	CACGTG	1 cut(s)	813
BbsI	GAAGAC	1 cut(s)	298
BbvI	GCAGC	3 cut(s)	44, 379, 515
BccI	CCATC	2 cut(s)	578, 856
BcgI	CGANNNNNNTGC	2 cut(s)	734, 768
BciT130I	CCWGG	1 cut(s)	870
BclI	TGATCA	1 cut(s)	364
BfaI	CTAG	2 cut(s)	530, 600
BglI	GCCNNNNNGGC	1 cut(s)	874
BglII	AGATCT	1 cut(s)	853
BisI	GCNGC	5 cut(s)	6, 33, 393, 504, 807
BlnI	CCTAGG	1 cut(s)	599
BlpI	GCTNAGC	1 cut(s)	318
BlsI	GCNGC	5 cut(s)	7, 34, 394, 505, 808
Bme1390I	CCNGG	1 cut(s)	870
BmiI	GGNNCC	1 cut(s)	867
BmrFI	CCNGG	1 cut(s)	870
BpiI	GAAGAC	1 cut(s)	298
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpmI	CTGGAG	1 cut(s)	891
Bpu1102I	GCTNAGC	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	654
BsaAI	YACGTR	1 cut(s)	813
BsaBI	GATNNNNATC	1 cut(s)	363
BsaJI	CCNNGG	2 cut(s)	514, 599
BsaWI	WCCGGW	2 cut(s)	23, 845
BsaXI	ACNNNNNCTCC	2 cut(s)	726, 756
Bse3DI	GCAATG	2 cut(s)	783, 825
Bse8I	GATNNNNATC	1 cut(s)	363
BseBI	CCWGG	1 cut(s)	870
BseDI	CCNNGG	2 cut(s)	514, 599
BseGI	GGATG	2 cut(s)	570, 867
BseJI	GATNNNNATC	1 cut(s)	363
BseMI	GCAATG	2 cut(s)	783, 825
BseMII	CTCAG	3 cut(s)	6, 243, 309
BseXI	GCAGC	3 cut(s)	44, 379, 515
BsgI	GTGCAG	1 cut(s)	125
Bsh1285I	CGRYCG	1 cut(s)	886
BshFI	GGCC	2 cut(s)	248, 809
BsiEI	CGRYCG	1 cut(s)	886
BsiSI	CCGG	2 cut(s)	24, 846
BslFI	GGGAC	1 cut(s)	535
BsmFI	GGGAC	1 cut(s)	535
BsmI	GAATGC	1 cut(s)	745
BsnI	GGCC	2 cut(s)	248, 809
Bsp1407I	TGTACA	1 cut(s)	644
Bsp143I	GATC	5 cut(s)	364, 442, 736, 853, 883
Bsp1720I	GCTNAGC	1 cut(s)	318
BspACI	CCGC	6 cut(s)	8, 209, 322, 411, 446, 806
BspANI	GGCC	2 cut(s)	248, 809
BspCNI	CTCAG	3 cut(s)	7, 242, 310
BspLI	GGNNCC	1 cut(s)	867
BspPI	GGATC	1 cut(s)	437
BspQI	GCTCTTC	1 cut(s)	375
BsrBI	CCGCTC	1 cut(s)	322
BsrDI	GCAATG	2 cut(s)	783, 825
BsrGI	TGTACA	1 cut(s)	644
BssECI	CCNNGG	2 cut(s)	514, 599
BssMI	GATC	5 cut(s)	364, 442, 736, 853, 883
BssT1I	CCWWGG	2 cut(s)	514, 599
Bst2UI	CCWGG	1 cut(s)	870
Bst4CI	ACNGT	2 cut(s)	346, 637
Bst6I	CTCTTC	2 cut(s)	281, 375
BstAUI	TGTACA	1 cut(s)	644
BstBAI	YACGTR	1 cut(s)	813
BstDEI	CTNAG	4 cut(s)	15, 229, 296, 318
BstF5I	GGATG	2 cut(s)	570, 867
BstKTI	GATC	5 cut(s)	367, 445, 739, 856, 886
BstMBI	GATC	5 cut(s)	364, 442, 736, 853, 883
BstMCI	CGRYCG	1 cut(s)	886
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 314, 503, 874
BstNI	CCWGG	1 cut(s)	870
BstSCI	CCNGG	1 cut(s)	868
BstV1I	GCAGC	3 cut(s)	44, 379, 515
BstV2I	GAAGAC	1 cut(s)	298
BstX2I	RGATCY	1 cut(s)	853
BstYI	RGATCY	1 cut(s)	853
BsuRI	GGCC	2 cut(s)	248, 809
BtsCI	GGATG	2 cut(s)	570, 867
CaiI	CAGNNNCTG	2 cut(s)	38, 112
CseI	GACGC	1 cut(s)	374
Csp6I	GTAC	3 cut(s)	455, 535, 645
CviAII	CATG	3 cut(s)	76, 491, 740
CviQI	GTAC	3 cut(s)	455, 535, 645
DdeI	CTNAG	4 cut(s)	15, 229, 296, 318
DpnI	GATC	5 cut(s)	366, 444, 738, 855, 885
DpnII	GATC	5 cut(s)	364, 442, 736, 853, 883
EaeI	YGGCCR	2 cut(s)	246, 807
Eam1104I	CTCTTC	2 cut(s)	281, 375
EarI	CTCTTC	2 cut(s)	281, 375
Eco130I	CCWWGG	2 cut(s)	514, 599
Eco57I	CTGAAG	1 cut(s)	696
Eco72I	CACGTG	1 cut(s)	813
EcoRII	CCWGG	1 cut(s)	868
EcoT14I	CCWWGG	2 cut(s)	514, 599
ErhI	CCWWGG	2 cut(s)	514, 599
FaeI	CATG	3 cut(s)	79, 494, 743
FaiI	YATR	9 cut(s)	77, 122, 349, 351, 398, 492, 640, 741, 758
FalI	AAGNNNNNCTT	4 cut(s)	372, 404, 674, 706
FaqI	GGGAC	1 cut(s)	535
FatI	CATG	3 cut(s)	75, 490, 739
FauI	CCCGC	1 cut(s)	315
FbaI	TGATCA	1 cut(s)	364
Fnu4HI	GCNGC	5 cut(s)	6, 33, 393, 504, 807
FokI	GGATG	2 cut(s)	557, 874
Fsp4HI	GCNGC	5 cut(s)	6, 33, 393, 504, 807
FspBI	CTAG	2 cut(s)	530, 600
GluI	GCNGC	5 cut(s)	6, 33, 393, 504, 807
GsuI	CTGGAG	1 cut(s)	891
HaeIII	GGCC	2 cut(s)	248, 809
HapII	CCGG	2 cut(s)	24, 846
HgaI	GACGC	1 cut(s)	374
Hin1II	CATG	3 cut(s)	79, 494, 743
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	2 cut(s)	59, 83
HpaII	CCGG	2 cut(s)	24, 846
HphI	GGTGA	5 cut(s)	38, 118, 167, 452, 719
Hpy166II	GTNNAC	3 cut(s)	126, 424, 583
Hpy188I	TCNGA	6 cut(s)	82, 94, 314, 358, 607, 888
Hpy188III	TCNNGA	1 cut(s)	682
Hpy8I	GTNNAC	3 cut(s)	126, 424, 583
HpyAV	CCTTC	5 cut(s)	171, 252, 584, 655, 799
HpyCH4III	ACNGT	2 cut(s)	346, 637
HpyCH4IV	ACGT	1 cut(s)	812
HpyCH4V	TGCA	5 cut(s)	106, 467, 745, 776, 830
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 314, 503, 874
HpyF3I	CTNAG	4 cut(s)	15, 229, 296, 318
HpySE526I	ACGT	1 cut(s)	812
Hsp92II	CATG	3 cut(s)	79, 494, 743
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	5 cut(s)	364, 442, 736, 853, 883
LguI	GCTCTTC	1 cut(s)	375
LmnI	GCTCC	1 cut(s)	865
Lsp1109I	GCAGC	3 cut(s)	44, 379, 515
MaeI	CTAG	2 cut(s)	530, 600
MaeII	ACGT	1 cut(s)	812
MaeIII	GTNAC	3 cut(s)	373, 712, 815
MalI	GATC	5 cut(s)	366, 444, 738, 855, 885
MbiI	CCGCTC	1 cut(s)	322
MboI	GATC	5 cut(s)	364, 442, 736, 853, 883
MboII	GAAGA	5 cut(s)	276, 298, 303, 392, 620
MflI	RGATCY	1 cut(s)	853
MlsI	TGGCCA	1 cut(s)	248
MluCI	AATT	5 cut(s)	95, 190, 432, 685, 770
MluNI	TGGCCA	1 cut(s)	248
MnlI	CCTC	8 cut(s)	22, 46, 568, 605, 703, 717, 866, 882
Mox20I	TGGCCA	1 cut(s)	248
MscI	TGGCCA	1 cut(s)	248
MseI	TTAA	3 cut(s)	276, 833, 904
Msp20I	TGGCCA	1 cut(s)	248
MspI	CCGG	2 cut(s)	24, 846
MspR9I	CCNGG	1 cut(s)	870
Mva1269I	GAATGC	1 cut(s)	745
MvaI	CCWGG	1 cut(s)	870
MwoI	GCNNNNNNNGC	4 cut(s)	11, 314, 503, 874
NdeII	GATC	5 cut(s)	364, 442, 736, 853, 883
NlaIII	CATG	3 cut(s)	79, 494, 743
NlaIV	GGNNCC	1 cut(s)	867
PciSI	GCTCTTC	1 cut(s)	375
PcsI	WCGNNNNNNNCGW	1 cut(s)	818
PctI	GAATGC	1 cut(s)	745
PfeI	GAWTC	2 cut(s)	59, 83
PkrI	GCNGC	5 cut(s)	7, 34, 394, 505, 808
Ple19I	CGATCG	1 cut(s)	886
PmaCI	CACGTG	1 cut(s)	813
PmlI	CACGTG	1 cut(s)	813
Ppu21I	YACGTR	1 cut(s)	813
Psp6I	CCWGG	1 cut(s)	868
PspCI	CACGTG	1 cut(s)	813
PspGI	CCWGG	1 cut(s)	868
PspN4I	GGNNCC	1 cut(s)	867
PstNI	CAGNNNCTG	2 cut(s)	38, 112
PsuI	RGATCY	1 cut(s)	853
PvuI	CGATCG	1 cut(s)	886
RsaI	GTAC	3 cut(s)	456, 536, 646
RsaNI	GTAC	3 cut(s)	455, 535, 645
SapI	GCTCTTC	1 cut(s)	375
SaqAI	TTAA	3 cut(s)	276, 833, 904
SatI	GCNGC	5 cut(s)	6, 33, 393, 504, 807
Sau3AI	GATC	5 cut(s)	364, 442, 736, 853, 883
ScrFI	CCNGG	1 cut(s)	870
SmlI	CTYRAG	1 cut(s)	669
SmoI	CTYRAG	1 cut(s)	669
Sse9I	AATT	5 cut(s)	95, 190, 432, 685, 770
SsiI	CCGC	6 cut(s)	8, 209, 322, 411, 446, 806
SspI	AATATT	1 cut(s)	652
SspMI	CTAG	2 cut(s)	530, 600
StyD4I	CCNGG	1 cut(s)	868
StyI	CCWWGG	2 cut(s)	514, 599
TaaI	ACNGT	2 cut(s)	346, 637
TaiI	ACGT	1 cut(s)	815
TaqI	TCGA	1 cut(s)	256
TasI	AATT	5 cut(s)	95, 190, 432, 685, 770
TatI	WGTACW	1 cut(s)	644
TauI	GCSGC	1 cut(s)	809
TfiI	GAWTC	2 cut(s)	59, 83
Tru1I	TTAA	3 cut(s)	276, 833, 904
Tru9I	TTAA	3 cut(s)	276, 833, 904
TseI	GCWGC	4 cut(s)	5, 32, 392, 503
TspDTI	ATGAA	2 cut(s)	153, 627
TspGWI	ACGGA	2 cut(s)	442, 449
XapI	RAATTY	4 cut(s)	95, 432, 685, 770
XcmI	CCANNNNNNNNNTGG	1 cut(s)	241
XmaJI	CCTAGG	1 cut(s)	599
XspI	CTAG	2 cut(s)	530, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.