Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009193

Physical Location & Seq

Genomic Coordinates Reverse (-)

10501063 .. 10506882

Gene Structure 5820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g16680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCTGCGGTTGCTGAGATGGGCGGTGAGGCAGCCTCTGCCAACAACCAGAAGTTGGATTCAGTACCGAAACCGGTATCTGAATCGAAACCCAAATCGGAATTCGATGTGCAGAAGCTGGTGGATATGTTCACCAAGCTGAACCCTTTAGCCAAAGAGTTCTTCCCTTCATCTTACTCACCTCTCCACAACCACAATTTTGATAACTCTTTTGCTGTCAATAACGATAAGCTCTTGCCCACTGACAATCAGGCCAACAATCGAAGGAGAAGAAATAACTACAATCAGGGGAAGAGAAGGTTAAGTGGGAGAGCTTTCAGAGCTGAGCGTGAAAATAGTATTAGACGAACAGTTTATGTTTCTGATATTGATCAGCAAGTTACTGAAGAGCGTCTTGCTGCCATATTTAGTAATTGTGGACAAGTGGTCGACTGCCGAATTTGCGGTGATCCGCATTCAGTACTCCGTTTTGCATTTGTGGAGTTTGCTGATGAGCATGGGGCGAGAGCTGCTTTGAACCTTGGTGGGACAATGTTAGGGTATTATCCTGTCAGAGTCTTACCTTCAAAAACTGCCATCCTCCCTGTGAACCCTACCTTCCTCCCTAGGTCAGAAGATGAGCGGGAAATGTGTAGCAGAACTGTATATTGTACAAATATCGATAAGAAGGTTTCTCAAGCTGAAGTCAAGAATTTCTTTGAAACAGCTTGTGGTGAGGTTACTCGTTTGAGGCTTTTGGGAGATCATGTGCATTCAACTCGTATAGCTTTTGTTGAATTTGCAATGGCAGAAAGTGCCATACTTGCACTGAACTGTAGCGGAATGGTGTTGGGAACACAACCCATCAGGGTAAGTCCTTCAAAGACACCTGTGCGGCCACGTGTCACTCGTCCATTGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2 RRM_1

Protein Analysis

301

Amino Acids

33.53

Weight (kDa)

9.08

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	118 - 180	1.7e-12	RNA recognition motif
RRM_1	PF00076	215 - 282	6.8e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53650 AT1G53650 AT3G14450
fragaria_vesca	FvH4_3g16680 FvH4_3g16680
malus_domestica	MD05G1208300.v1.1 MD10G1194800.v1.1
prunus_persica	Prupe.4G149200_v2.0.a1 Prupe.4G149200_v2.0.a1
pyrus_communis	pycom05g19400 pycom10g16820
rosa_chinensis	RchiOBHm_Chr5g0027791
rosa_laevigata	RLG00000033043
rosa_multiflora	Rmu_sc0000920.1_g000007
rosa_roxburghii	Rroxscaffold_1G00051820
rosa_rugosa	Rorug05G0101100 Rorug05G0101200
rosa_samantha	Rh5AG195400 Rh5BG193700 Rh5CG214000 Rh5DG195700
rosa_wichuraiana	Rw5G017830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	55
AccBSI	CCGCTC	1 cut(s)	622
AccI	GTMKAC	1 cut(s)	429
AciI	CCGC	7 cut(s)	8, 24, 444, 452, 622, 819, 874
AclWI	GGATC	1 cut(s)	443
AcoI	YGGCCR	1 cut(s)	875
AcsI	RAATTY	4 cut(s)	101, 438, 691, 776
AcuI	CTGAAG	2 cut(s)	405, 702
AcvI	CACGTG	1 cut(s)	881
AfaI	GTAC	3 cut(s)	66, 462, 652
AfiI	CCNNNNNNNGG	1 cut(s)	55
AflIII	ACRYGT	1 cut(s)	880
AgeI	ACCGGT	1 cut(s)	73
AgsI	TTSAA	6 cut(s)	517, 567, 701, 756, 776, 861
AhdI	GACNNNNNGTC	1 cut(s)	425
AjuI	GAANNNNNNNTTGG	4 cut(s)	86, 118, 146, 178
AluBI	AGCT	9 cut(s)	118, 139, 232, 314, 323, 509, 680, 707, 767
AluI	AGCT	9 cut(s)	118, 139, 232, 314, 323, 509, 680, 707, 767
AlwI	GGATC	1 cut(s)	443
AlwNI	CAGNNNCTG	2 cut(s)	38, 118
AoxI	GGCC	2 cut(s)	252, 875
ApeKI	GCWGC	4 cut(s)	5, 32, 398, 509
ApoI	RAATTY	4 cut(s)	101, 438, 691, 776
AsiGI	ACCGGT	1 cut(s)	73
AspA2I	CCTAGG	1 cut(s)	605
AsuHPI	GGTGA	5 cut(s)	38, 124, 171, 458, 725
AvrII	CCTAGG	1 cut(s)	605
BbrPI	CACGTG	1 cut(s)	881
BbvI	GCAGC	3 cut(s)	44, 385, 496
BccI	CCATC	3 cut(s)	13, 584, 851
BcgI	CGANNNNNNTGC	2 cut(s)	740, 774
BclI	TGATCA	1 cut(s)	370
BfaI	CTAG	1 cut(s)	606
BfmI	CTRYAG	1 cut(s)	814
BisI	GCNGC	5 cut(s)	6, 33, 399, 510, 875
BlnI	CCTAGG	1 cut(s)	605
BlpI	GCTNAGC	1 cut(s)	324
BlsI	GCNGC	5 cut(s)	7, 34, 400, 511, 876
BmcAI	AGTACT	1 cut(s)	462
BmeRI	GACNNNNNGTC	1 cut(s)	425
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
Bpu1102I	GCTNAGC	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	660
Bsa29I	ATCGAT	1 cut(s)	660
BsaAI	YACGTR	1 cut(s)	881
BsaBI	GATNNNNATC	1 cut(s)	369
BsaJI	CCNNGG	2 cut(s)	520, 605
BsaWI	WCCGGW	1 cut(s)	73
BsaXI	ACNNNNNCTCC	2 cut(s)	732, 762
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse118I	RCCGGY	1 cut(s)	73
Bse3DI	GCAATG	2 cut(s)	789, 893
Bse8I	GATNNNNATC	1 cut(s)	369
BseCI	ATCGAT	1 cut(s)	660
BseDI	CCNNGG	2 cut(s)	520, 605
BseGI	GGATG	1 cut(s)	576
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMI	GCAATG	2 cut(s)	789, 893
BseMII	CTCAG	2 cut(s)	6, 315
BseXI	GCAGC	3 cut(s)	44, 385, 496
BsgI	GTGCAG	1 cut(s)	131
BshFI	GGCC	2 cut(s)	254, 877
BshTI	ACCGGT	1 cut(s)	73
BshVI	ATCGAT	1 cut(s)	660
BsiSI	CCGG	1 cut(s)	74
BslFI	GGGAC	1 cut(s)	541
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	541
BsmI	GAATGC	2 cut(s)	454, 751
BsnI	GGCC	2 cut(s)	254, 877
Bsp1407I	TGTACA	1 cut(s)	650
Bsp143I	GATC	3 cut(s)	370, 448, 742
Bsp1720I	GCTNAGC	1 cut(s)	324
BspACI	CCGC	7 cut(s)	8, 24, 444, 452, 622, 819, 874
BspANI	GGCC	2 cut(s)	254, 877
BspCNI	CTCAG	2 cut(s)	7, 316
BspDI	ATCGAT	1 cut(s)	660
BspPI	GGATC	1 cut(s)	443
BspQI	GCTCTTC	1 cut(s)	381
BsrBI	CCGCTC	1 cut(s)	622
BsrDI	GCAATG	2 cut(s)	789, 893
BsrFI	RCCGGY	1 cut(s)	73
BsrGI	TGTACA	1 cut(s)	650
BssAI	RCCGGY	1 cut(s)	73
BssECI	CCNNGG	2 cut(s)	520, 605
BssMI	GATC	3 cut(s)	370, 448, 742
BssT1I	CCWWGG	2 cut(s)	520, 605
Bst4CI	ACNGT	3 cut(s)	352, 643, 815
Bst6I	CTCTTC	2 cut(s)	287, 381
BstAPI	GCANNNNNTGC	2 cut(s)	38, 794
BstAUI	TGTACA	1 cut(s)	650
BstBAI	YACGTR	1 cut(s)	881
BstDEI	CTNAG	2 cut(s)	15, 324
BstF5I	GGATG	1 cut(s)	576
BstKTI	GATC	3 cut(s)	373, 451, 745
BstMBI	GATC	3 cut(s)	370, 448, 742
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 38, 320, 441, 509, 794, 803
BstSFI	CTRYAG	1 cut(s)	814
BstV1I	GCAGC	3 cut(s)	44, 385, 496
Bsu15I	ATCGAT	1 cut(s)	660
BsuRI	GGCC	2 cut(s)	254, 877
BsuTUI	ATCGAT	1 cut(s)	660
BtsCI	GGATG	1 cut(s)	576
BtsIMutI	CAGTG	2 cut(s)	240, 806
CaiI	CAGNNNCTG	2 cut(s)	38, 118
Cfr10I	RCCGGY	1 cut(s)	73
ClaI	ATCGAT	1 cut(s)	660
CseI	GACGC	1 cut(s)	380
Csp6I	GTAC	3 cut(s)	65, 461, 651
CspAI	ACCGGT	1 cut(s)	73
CviAII	CATG	2 cut(s)	497, 746
CviQI	GTAC	3 cut(s)	65, 461, 651
DdeI	CTNAG	2 cut(s)	15, 324
DpnI	GATC	3 cut(s)	372, 450, 744
DpnII	GATC	3 cut(s)	370, 448, 742
DriI	GACNNNNNGTC	1 cut(s)	425
EaeI	YGGCCR	1 cut(s)	875
Eam1104I	CTCTTC	2 cut(s)	287, 381
Eam1105I	GACNNNNNGTC	1 cut(s)	425
EarI	CTCTTC	2 cut(s)	287, 381
Eco130I	CCWWGG	2 cut(s)	520, 605
Eco57I	CTGAAG	2 cut(s)	405, 702
Eco72I	CACGTG	1 cut(s)	881
EcoRI	GAATTC	1 cut(s)	101
EcoT14I	CCWWGG	2 cut(s)	520, 605
ErhI	CCWWGG	2 cut(s)	520, 605
FaeI	CATG	2 cut(s)	500, 749
FaiI	YATR	8 cut(s)	128, 357, 404, 498, 646, 747, 764, 800
FalI	AAGNNNNNCTT	4 cut(s)	378, 410, 680, 712
FaqI	GGGAC	1 cut(s)	541
FatI	CATG	2 cut(s)	496, 745
FauI	CCCGC	1 cut(s)	615
FbaI	TGATCA	1 cut(s)	370
FblI	GTMKAC	1 cut(s)	429
Fnu4HI	GCNGC	5 cut(s)	6, 33, 399, 510, 875
FokI	GGATG	1 cut(s)	563
Fsp4HI	GCNGC	5 cut(s)	6, 33, 399, 510, 875
FspBI	CTAG	1 cut(s)	606
GluI	GCNGC	5 cut(s)	6, 33, 399, 510, 875
HaeIII	GGCC	2 cut(s)	254, 877
HapII	CCGG	1 cut(s)	74
HgaI	GACGC	1 cut(s)	380
Hin1II	CATG	2 cut(s)	500, 749
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	3 cut(s)	59, 83, 555
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	5 cut(s)	38, 124, 171, 458, 725
Hpy166II	GTNNAC	4 cut(s)	132, 419, 430, 589
Hpy188I	TCNGA	6 cut(s)	82, 100, 320, 364, 554, 613
Hpy188III	TCNNGA	1 cut(s)	688
Hpy8I	GTNNAC	4 cut(s)	132, 419, 430, 589
HpyAV	CCTTC	7 cut(s)	177, 258, 291, 573, 607, 661, 867
HpyCH4III	ACNGT	3 cut(s)	352, 643, 815
HpyCH4IV	ACGT	1 cut(s)	880
HpyCH4V	TGCA	6 cut(s)	112, 473, 751, 782, 806, 898
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 38, 320, 441, 509, 794, 803
HpyF3I	CTNAG	2 cut(s)	15, 324
HpySE526I	ACGT	1 cut(s)	880
Hsp92II	CATG	2 cut(s)	500, 749
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	3 cut(s)	370, 448, 742
LguI	GCTCTTC	1 cut(s)	381
LpnPI	CCDG	9 cut(s)	62, 87, 104, 236, 272, 561, 597, 832, 882
Lsp1109I	GCAGC	3 cut(s)	44, 385, 496
MaeI	CTAG	1 cut(s)	606
MaeII	ACGT	1 cut(s)	880
MaeIII	GTNAC	3 cut(s)	379, 718, 883
MalI	GATC	3 cut(s)	372, 450, 744
MbiI	CCGCTC	1 cut(s)	622
MboI	GATC	3 cut(s)	370, 448, 742
MboII	GAAGA	5 cut(s)	154, 282, 304, 398, 626
MluCI	AATT	6 cut(s)	101, 196, 412, 438, 691, 776
MlyI	GAGTC	1 cut(s)	564
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	7 cut(s)	22, 46, 192, 590, 611, 709, 723
MseI	TTAA	1 cut(s)	302
MspI	CCGG	1 cut(s)	74
Mva1269I	GAATGC	2 cut(s)	454, 751
MwoI	GCNNNNNNNGC	7 cut(s)	11, 38, 320, 441, 509, 794, 803
NdeII	GATC	3 cut(s)	370, 448, 742
NlaIII	CATG	2 cut(s)	500, 749
NmuCI	GTSAC	1 cut(s)	883
PciSI	GCTCTTC	1 cut(s)	381
PcsI	WCGNNNNNNNCGW	1 cut(s)	886
PctI	GAATGC	2 cut(s)	454, 751
PfeI	GAWTC	2 cut(s)	59, 83
PflMI	CCANNNNNTGG	1 cut(s)	55
PinAI	ACCGGT	1 cut(s)	73
PkrI	GCNGC	5 cut(s)	7, 34, 400, 511, 876
PleI	GAGTC	1 cut(s)	563
PmaCI	CACGTG	1 cut(s)	881
PmlI	CACGTG	1 cut(s)	881
PpsI	GAGTC	1 cut(s)	563
Ppu21I	YACGTR	1 cut(s)	881
PspCI	CACGTG	1 cut(s)	881
PstNI	CAGNNNCTG	2 cut(s)	38, 118
RsaI	GTAC	3 cut(s)	66, 462, 652
RsaNI	GTAC	3 cut(s)	65, 461, 651
SalI	GTCGAC	1 cut(s)	428
SapI	GCTCTTC	1 cut(s)	381
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	5 cut(s)	6, 33, 399, 510, 875
Sau3AI	GATC	3 cut(s)	370, 448, 742
ScaI	AGTACT	1 cut(s)	462
SchI	GAGTC	1 cut(s)	564
SfcI	CTRYAG	1 cut(s)	814
SmlI	CTYRAG	1 cut(s)	675
SmoI	CTYRAG	1 cut(s)	675
Sse9I	AATT	6 cut(s)	101, 196, 412, 438, 691, 776
SsiI	CCGC	7 cut(s)	8, 24, 444, 452, 622, 819, 874
SspMI	CTAG	1 cut(s)	606
StyI	CCWWGG	2 cut(s)	520, 605
TaaI	ACNGT	3 cut(s)	352, 643, 815
TaiI	ACGT	1 cut(s)	883
TaqI	TCGA	5 cut(s)	86, 105, 262, 429, 660
TasI	AATT	6 cut(s)	101, 196, 412, 438, 691, 776
TatI	WGTACW	2 cut(s)	460, 650
TauI	GCSGC	1 cut(s)	877
TfiI	GAWTC	2 cut(s)	59, 83
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TscAI	CASTG	2 cut(s)	247, 813
TseFI	GTSAC	1 cut(s)	883
TseI	GCWGC	4 cut(s)	5, 32, 398, 509
Tsp45I	GTSAC	1 cut(s)	883
TspDTI	ATGAA	1 cut(s)	159
TspGWI	ACGGA	1 cut(s)	455
TspRI	CASTG	2 cut(s)	247, 813
Van91I	CCANNNNNTGG	1 cut(s)	55
XapI	RAATTY	4 cut(s)	101, 438, 691, 776
XmaJI	CCTAGG	1 cut(s)	605
XmiI	GTMKAC	1 cut(s)	429
XspI	CTAG	1 cut(s)	606
ZrmI	AGTACT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.