Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009193

Physical Location & Seq

Genomic Coordinates Forward (+)

8905915 .. 8907927

Gene Structure 2013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0101100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGCAGGCCTCAATTTTCATTCCAACTTCATCAACCTCTCACTCCCTTCTGAAACCTATCTCAAACCCTCTTCTGGGTCATTCTCTATCTTCAAAACCATGCTTGCCTCTGAAAAGAAGAGCCTCTTTCACCACCAAAGCACTTCTGTCAACTACTAAAGAATCAGTCTTGAAAGATTTTCATGAACGCAGAGCTCTCAAGATTATTTCAGGTCTGCAGAATTTTGACAAAGAAAATGTTGCATCAGTCATTACTGCTGCAGAACAGGGAGGAGCAACTCATGTTGATATAGCTTGTGACCCTGAGTTGGTGAAGCTTGCTATTGGTCTAACTTCTCTTCCGGTTTGTGTTTCTTCTGTAGATCCCGAGGCATTTCCAGCTGCTGTTGAAGCAGGAGCACTAATGGTTGAGATTGGAAACTATGACTCATTCTATGAGATGGGTGTGATTTTCACTCCTGAGCAGATATTAAATCTAGCAAAACACACCAAGAGGATTCTTCCATCTGTGGCCTTATCAGTCACTGTACCACATACACTAAGCCTCCCAGACCAGGTCAAGCTTGCAGAGATGCTAGAGCAGGAAGGTGTAGATATCATCCAGACTGAAGGAGGAAAATGTTCCAACCCCTCCCAATCCGGCGTTCTTGGTTTGATCGAGAAGGCGTCACCAACATTAGCAGCAGCATACTCTATATCACGGGCTGTCAACATTCCTGTCATGTGTTCATCTGGACTGAGTGCAGTTACAGCACCAATGGCCATAACAGCAGGAGCAGCGGGTGTGGGCGTGGGCTCAGCAGTTAACAAGCTCAATGATGTAGTTGCGATGATTGCAGAAGTCAGGAGTATCTCCGATTCATTAGGAGCATCAGCTGGTACCAGTAGGCGTACTACCAGCGAAGAAAAAACTTTGAAACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2 RRM_1

Protein Analysis

307

Amino Acids

32.03

Weight (kDa)

6.32

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF561	PF04481	55 - 290	8.2e-86	Protein of unknown function (DUF561)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53650 AT1G53650 AT3G14450
fragaria_vesca	FvH4_3g16680 FvH4_3g16680
malus_domestica	MD05G1208300.v1.1 MD10G1194800.v1.1
prunus_persica	Prupe.4G149200_v2.0.a1 Prupe.4G149200_v2.0.a1
pyrus_communis	pycom05g19400 pycom10g16820
rosa_chinensis	RchiOBHm_Chr5g0027791
rosa_laevigata	RLG00000033043
rosa_multiflora	Rmu_sc0000920.1_g000007
rosa_roxburghii	Rroxscaffold_1G00051820
rosa_rugosa	Rorug05G0101100 Rorug05G0101200
rosa_samantha	Rh5AG195400 Rh5BG193700 Rh5CG214000 Rh5DG195700
rosa_wichuraiana	Rw5G017830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	878
AccB1I	GGYRCC	1 cut(s)	878
AciI	CCGC	1 cut(s)	779
AclWI	GGATC	1 cut(s)	356
AcoI	YGGCCR	1 cut(s)	759
AcsI	RAATTY	1 cut(s)	220
AcuI	CTGAAG	1 cut(s)	627
AcyI	GRCGYC	1 cut(s)	665
AfaI	GTAC	3 cut(s)	528, 880, 892
AfiI	CCNNNNNNNGG	4 cut(s)	73, 74, 307, 553
AgsI	TTSAA	4 cut(s)	93, 172, 389, 916
AjnI	CCWGG	1 cut(s)	552
AjuI	GAANNNNNNNTTGG	2 cut(s)	627, 659
AluBI	AGCT	7 cut(s)	194, 293, 316, 380, 562, 811, 875
AluI	AGCT	7 cut(s)	194, 293, 316, 380, 562, 811, 875
Alw21I	GWGCWC	2 cut(s)	196, 400
AlwI	GGATC	1 cut(s)	356
AlwNI	CAGNNNCTG	2 cut(s)	383, 524
Ama87I	CYCGRG	1 cut(s)	365
AoxI	GGCC	3 cut(s)	6, 510, 759
ApeKI	GCWGC	5 cut(s)	257, 380, 680, 683, 776
ApoI	RAATTY	1 cut(s)	220
Asp700I	GAANNNNTTC	1 cut(s)	619
Asp718I	GGTACC	1 cut(s)	878
AsuHPI	GGTGA	3 cut(s)	121, 322, 660
AvaI	CYCGRG	1 cut(s)	365
BalI	TGGCCA	1 cut(s)	761
BanI	GGYRCC	1 cut(s)	878
BanII	GRGCYC	2 cut(s)	196, 797
Bbv12I	GWGCWC	2 cut(s)	196, 400
BbvI	GCAGC	5 cut(s)	244, 367, 692, 695, 788
BccI	CCATC	2 cut(s)	433, 511
BciT130I	CCWGG	1 cut(s)	554
BfaI	CTAG	2 cut(s)	476, 575
BfmI	CTRYAG	3 cut(s)	215, 258, 357
BisI	GCNGC	5 cut(s)	258, 381, 681, 684, 777
BlpI	GCTNAGC	1 cut(s)	796
BlsI	GCNGC	5 cut(s)	259, 382, 682, 685, 778
Bme1390I	CCNGG	1 cut(s)	554
BmeT110I	CYCGRG	1 cut(s)	365
BmiI	GGNNCC	1 cut(s)	880
BmrFI	CCNGG	1 cut(s)	554
BmsI	GCATC	3 cut(s)	251, 561, 878
Bpu10I	CCTNAGC	1 cut(s)	459
Bpu1102I	GCTNAGC	1 cut(s)	796
BpuEI	CTTGAG	1 cut(s)	182
BsaHI	GRCGYC	1 cut(s)	665
BsaJI	CCNNGG	1 cut(s)	366
BsaWI	WCCGGW	1 cut(s)	340
BsaXI	ACNNNNNCTCC	2 cut(s)	528, 558
Bsc4I	CCNNNNNNNGG	4 cut(s)	73, 74, 307, 553
Bse1I	ACTGG	1 cut(s)	882
BseBI	CCWGG	1 cut(s)	554
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	1 cut(s)	597
BseLI	CCNNNNNNNGG	4 cut(s)	73, 74, 307, 553
BseMII	CTCAG	4 cut(s)	294, 450, 728, 810
BseNI	ACTGG	1 cut(s)	882
BseRI	GAGGAG	1 cut(s)	285
BseXI	GCAGC	5 cut(s)	244, 367, 692, 695, 788
BsgI	GTGCAG	1 cut(s)	762
BshFI	GGCC	3 cut(s)	8, 512, 761
BshNI	GGYRCC	1 cut(s)	878
BsiHKAI	GWGCWC	2 cut(s)	196, 400
BsiHKCI	CYCGRG	1 cut(s)	365
BsiSI	CCGG	2 cut(s)	341, 639
BslI	CCNNNNNNNGG	4 cut(s)	73, 74, 307, 553
BsnI	GGCC	3 cut(s)	8, 512, 761
BsoBI	CYCGRG	1 cut(s)	365
Bsp1286I	GDGCHC	3 cut(s)	196, 400, 797
Bsp143I	GATC	2 cut(s)	361, 654
Bsp1720I	GCTNAGC	1 cut(s)	796
BspACI	CCGC	1 cut(s)	779
BspANI	GGCC	3 cut(s)	8, 512, 761
BspCNI	CTCAG	4 cut(s)	295, 451, 729, 809
BspHI	TCATGA	1 cut(s)	181
BspLI	GGNNCC	1 cut(s)	880
BspMAI	CTGCAG	2 cut(s)	219, 262
BspPI	GGATC	1 cut(s)	356
BspQI	GCTCTTC	1 cut(s)	112
BspT107I	GGYRCC	1 cut(s)	878
BsrI	ACTGG	1 cut(s)	882
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	2 cut(s)	361, 654
BssNI	GRCGYC	1 cut(s)	665
Bst2UI	CCWGG	1 cut(s)	554
Bst4CI	ACNGT	2 cut(s)	526, 921
Bst6I	CTCTTC	3 cut(s)	75, 112, 342
BstACI	GRCGYC	1 cut(s)	665
BstC8I	GCNNGC	4 cut(s)	6, 104, 318, 564
BstDEI	CTNAG	5 cut(s)	303, 459, 539, 737, 796
BstF5I	GGATG	1 cut(s)	597
BstKTI	GATC	2 cut(s)	364, 657
BstMBI	GATC	2 cut(s)	361, 654
BstMWI	GCNNNNNNNGC	7 cut(s)	377, 389, 749, 758, 767, 776, 833
BstNI	CCWGG	1 cut(s)	554
BstSCI	CCNGG	1 cut(s)	552
BstSFI	CTRYAG	3 cut(s)	215, 258, 357
BstV1I	GCAGC	5 cut(s)	244, 367, 692, 695, 788
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BsuRI	GGCC	3 cut(s)	8, 512, 761
BtgZI	GCGATG	1 cut(s)	842
BtsCI	GGATG	1 cut(s)	597
BtsIMutI	CAGTG	1 cut(s)	522
Cac8I	GCNNGC	4 cut(s)	6, 104, 318, 564
CaiI	CAGNNNCTG	2 cut(s)	383, 524
CciI	TCATGA	1 cut(s)	181
CseI	GACGC	1 cut(s)	654
CsiI	ACCWGGT	1 cut(s)	552
Csp6I	GTAC	3 cut(s)	527, 879, 891
CviAII	CATG	4 cut(s)	99, 182, 281, 721
CviQI	GTAC	3 cut(s)	527, 879, 891
DdeI	CTNAG	5 cut(s)	303, 459, 539, 737, 796
DpnI	GATC	2 cut(s)	363, 656
DpnII	GATC	2 cut(s)	361, 654
EaeI	YGGCCR	1 cut(s)	759
Eam1104I	CTCTTC	3 cut(s)	75, 112, 342
EarI	CTCTTC	3 cut(s)	75, 112, 342
Ecl136II	GAGCTC	1 cut(s)	194
Eco147I	AGGCCT	1 cut(s)	8
Eco24I	GRGCYC	2 cut(s)	196, 797
Eco32I	GATATC	1 cut(s)	595
Eco53kI	GAGCTC	1 cut(s)	194
Eco57I	CTGAAG	1 cut(s)	627
Eco88I	CYCGRG	1 cut(s)	365
EcoICRI	GAGCTC	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	552
EcoRV	GATATC	1 cut(s)	595
EcoT38I	GRGCYC	2 cut(s)	196, 797
FaeI	CATG	4 cut(s)	102, 185, 284, 724
FalI	AAGNNNNNCTT	2 cut(s)	109, 141
FatI	CATG	4 cut(s)	98, 181, 280, 720
FauI	CCCGC	1 cut(s)	772
Fnu4HI	GCNGC	5 cut(s)	258, 381, 681, 684, 777
FokI	GGATG	1 cut(s)	584
FriOI	GRGCYC	2 cut(s)	196, 797
Fsp4HI	GCNGC	5 cut(s)	258, 381, 681, 684, 777
FspBI	CTAG	2 cut(s)	476, 575
GluI	GCNGC	5 cut(s)	258, 381, 681, 684, 777
HaeIII	GGCC	3 cut(s)	8, 512, 761
HapII	CCGG	2 cut(s)	341, 639
HgaI	GACGC	1 cut(s)	654
Hin1I	GRCGYC	1 cut(s)	665
Hin1II	CATG	4 cut(s)	102, 185, 284, 724
HincII	GTYRAC	3 cut(s)	150, 709, 805
HindII	GTYRAC	3 cut(s)	150, 709, 805
HindIII	AAGCTT	2 cut(s)	314, 560
HinfI	GANTC	4 cut(s)	161, 425, 496, 857
HpaI	GTTAAC	1 cut(s)	805
HpaII	CCGG	2 cut(s)	341, 639
HphI	GGTGA	3 cut(s)	121, 322, 660
Hpy166II	GTNNAC	3 cut(s)	150, 709, 805
Hpy188I	TCNGA	3 cut(s)	51, 111, 856
Hpy188III	TCNNGA	9 cut(s)	169, 182, 199, 365, 458, 601, 658, 732, 844
Hpy8I	GTNNAC	3 cut(s)	150, 709, 805
HpyAV	CCTTC	4 cut(s)	56, 578, 602, 655
HpyCH4III	ACNGT	2 cut(s)	526, 921
HpyCH4V	TGCA	7 cut(s)	4, 217, 242, 260, 566, 743, 836
HpyF10VI	GCNNNNNNNGC	7 cut(s)	377, 389, 749, 758, 767, 776, 833
HpyF3I	CTNAG	5 cut(s)	303, 459, 539, 737, 796
Hsp92I	GRCGYC	1 cut(s)	665
Hsp92II	CATG	4 cut(s)	102, 185, 284, 724
KpnI	GGTACC	1 cut(s)	882
KspAI	GTTAAC	1 cut(s)	805
Kzo9I	GATC	2 cut(s)	361, 654
LguI	GCTCTTC	1 cut(s)	112
LmnI	GCTCC	4 cut(s)	272, 395, 773, 866
Lsp1109I	GCAGC	5 cut(s)	244, 367, 692, 695, 788
LweI	GCATC	3 cut(s)	251, 561, 878
MabI	ACCWGGT	1 cut(s)	552
MaeI	CTAG	2 cut(s)	476, 575
MaeIII	GTNAC	4 cut(s)	296, 520, 666, 745
MalI	GATC	2 cut(s)	363, 656
MboI	GATC	2 cut(s)	361, 654
MboII	GAAGA	7 cut(s)	62, 81, 129, 329, 345, 491, 914
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	3 cut(s)	196, 400, 797
MlsI	TGGCCA	1 cut(s)	761
MluCI	AATT	2 cut(s)	12, 220
MluNI	TGGCCA	1 cut(s)	761
MlyI	GAGTC	1 cut(s)	419
MmeI	TCCRAC	2 cut(s)	47, 648
Mox20I	TGGCCA	1 cut(s)	761
MroXI	GAANNNNTTC	1 cut(s)	619
MscI	TGGCCA	1 cut(s)	761
MseI	TTAA	2 cut(s)	470, 804
Msp20I	TGGCCA	1 cut(s)	761
MspA1I	CMGCKG	3 cut(s)	380, 779, 875
MspI	CCGG	2 cut(s)	341, 639
MspR9I	CCNGG	1 cut(s)	554
MvaI	CCWGG	1 cut(s)	554
MwoI	GCNNNNNNNGC	7 cut(s)	377, 389, 749, 758, 767, 776, 833
NdeII	GATC	2 cut(s)	361, 654
NlaIII	CATG	4 cut(s)	102, 185, 284, 724
NlaIV	GGNNCC	1 cut(s)	880
NmuCI	GTSAC	3 cut(s)	296, 520, 666
PagI	TCATGA	1 cut(s)	181
PceI	AGGCCT	1 cut(s)	8
PciSI	GCTCTTC	1 cut(s)	112
PdmI	GAANNNNTTC	1 cut(s)	619
PfeI	GAWTC	3 cut(s)	161, 496, 857
PflFI	GACNNNGTC	1 cut(s)	554
PkrI	GCNGC	5 cut(s)	259, 382, 682, 685, 778
PleI	GAGTC	1 cut(s)	419
PpsI	GAGTC	1 cut(s)	419
Psp124BI	GAGCTC	1 cut(s)	196
Psp6I	CCWGG	1 cut(s)	552
PspGI	CCWGG	1 cut(s)	552
PspN4I	GGNNCC	1 cut(s)	880
PstI	CTGCAG	2 cut(s)	219, 262
PstNI	CAGNNNCTG	2 cut(s)	383, 524
PsuI	RGATCY	1 cut(s)	361
PsyI	GACNNNGTC	1 cut(s)	554
PvuII	CAGCTG	2 cut(s)	380, 875
RsaI	GTAC	3 cut(s)	528, 880, 892
RsaNI	GTAC	3 cut(s)	527, 879, 891
SacI	GAGCTC	1 cut(s)	196
SapI	GCTCTTC	1 cut(s)	112
SaqAI	TTAA	2 cut(s)	470, 804
SatI	GCNGC	5 cut(s)	258, 381, 681, 684, 777
Sau3AI	GATC	2 cut(s)	361, 654
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	1 cut(s)	554
SduI	GDGCHC	3 cut(s)	196, 400, 797
SexAI	ACCWGGT	1 cut(s)	552
SfaNI	GCATC	3 cut(s)	251, 561, 878
SfcI	CTRYAG	3 cut(s)	215, 258, 357
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	2 cut(s)	12, 220
SseBI	AGGCCT	1 cut(s)	8
SsiI	CCGC	1 cut(s)	779
SspMI	CTAG	2 cut(s)	476, 575
SstI	GAGCTC	1 cut(s)	196
StuI	AGGCCT	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	552
TaaI	ACNGT	2 cut(s)	526, 921
TaqI	TCGA	1 cut(s)	657
TasI	AATT	2 cut(s)	12, 220
TfiI	GAWTC	3 cut(s)	161, 496, 857
Tru1I	TTAA	2 cut(s)	470, 804
Tru9I	TTAA	2 cut(s)	470, 804
TscAI	CASTG	1 cut(s)	529
TseFI	GTSAC	3 cut(s)	296, 520, 666
TseI	GCWGC	5 cut(s)	257, 380, 680, 683, 776
Tsp45I	GTSAC	3 cut(s)	296, 520, 666
TspDTI	ATGAA	6 cut(s)	7, 18, 170, 198, 717, 849
TspRI	CASTG	1 cut(s)	529
Tth111I	GACNNNGTC	1 cut(s)	554
XapI	RAATTY	1 cut(s)	220
XmnI	GAANNNNTTC	1 cut(s)	619
XspI	CTAG	2 cut(s)	476, 575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.