Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009193

Physical Location & Seq

Genomic Coordinates Forward (+)

4849539 .. 4851678

Gene Structure 2140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G14450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCTACGGTCACTGAGATGCCCACTGATGTTGTTGTTGTCGACGATGTTAAGGAAGTTAGTACCAAAAGCGAAAAGATCATCGATGAGGGAATTGAGAAGAGCTCGATCACGGATTCTAAAACCGAAACTGAATCTCGGCTTGATATGCACAAGCTTGTGGCTATGTTCAAGAAACTGAATCCTTTGGCCAAGGAGTTTTTCCCTTCTTACTACGATCCGAAGAAGAACAATCAGGTAGCTAAGGCTAACCAATTTCTGCCGGCTGACGATTTTGAGACCACCAAGAAGCAATCTGGTGAAGAATTTGATCTTGATGCCAAGAAGGATGACAATACCCGCAAGAGAAGAAACTATAGCCAAGGGAGAAGGAGGTTAACTGGAAGAATTTCTAAGGCTCAAAGAGAGGATAGTATTAGAAGAACAGTTTATGTTTCTGACATTGACCAGAGTGTGACTGAGGAGGGTCTTGCTGGCTTGTTTAGTAACTGTGGACAAGTTGTTGACTGTAGAATTTGTGGCGATCCACATTCGGTTCTTCGATTTGCGTTTGTTGAGTTTGCTGATGACCAGGGCGCACATGAAGCTTTAAGCCTTGGTGGAACAATGCTCGGGTTCTACCCGGTGAGGGTCTTACCCTCAAAAACTGCCATCCTACCAGTGAATCCCACATTTCTTCCAAGGTCAGAAGATGAAAGGGAGATGTGCACAAGGACAATCTATTGCACCAACATCGACAAGAAAGTTTCTCAAGCTGATGTGAGAAACTTCTTTGAATCTGCATGTGGTGAGGTAACTCGTCTGAGGCTTCTTGGCGATCAATTGCATTCAACTCGCATAGCTTTTGTTGAATTTGCTCTGGCAGATAGTGCACTTAGCGCGCTCAATTGCAGCGGAATGGTCGTTGGATCACAACCGATAAGGGTAAGTCCATCAAAGACACCAGTGAGGCCAAGAATCACTCGACCACCATCGACAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2 RRM_1

Protein Analysis

327

Amino Acids

36.55

Weight (kDa)

6.91

Isoelectric Point (pI)

52.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	143 - 205	1.6e-11	RNA recognition motif
RRM_1	PF00076	240 - 308	1e-08	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53650 AT1G53650 AT3G14450
fragaria_vesca	FvH4_3g16680 FvH4_3g16680
malus_domestica	MD05G1208300.v1.1 MD10G1194800.v1.1
prunus_persica	Prupe.4G149200_v2.0.a1 Prupe.4G149200_v2.0.a1
pyrus_communis	pycom05g19400 pycom10g16820
rosa_chinensis	RchiOBHm_Chr5g0027791
rosa_laevigata	RLG00000033043
rosa_multiflora	Rmu_sc0000920.1_g000007
rosa_roxburghii	Rroxscaffold_1G00051820
rosa_rugosa	Rorug05G0101100 Rorug05G0101200
rosa_samantha	Rh5AG195400 Rh5BG193700 Rh5CG214000 Rh5DG195700
rosa_wichuraiana	Rw5G017830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	42
AccII	CGCG	1 cut(s)	881
AciI	CCGC	2 cut(s)	340, 894
AclWI	GGATC	3 cut(s)	212, 518, 916
AcoI	YGGCCR	1 cut(s)	189
AcsI	RAATTY	4 cut(s)	305, 387, 513, 851
AfaI	GTAC	1 cut(s)	64
AfiI	CCNNNNNNNGG	1 cut(s)	628
AgsI	TTSAA	4 cut(s)	172, 776, 831, 851
AjnI	CCWGG	1 cut(s)	570
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
AluBI	AGCT	6 cut(s)	105, 157, 242, 587, 755, 842
AluI	AGCT	6 cut(s)	105, 157, 242, 587, 755, 842
Alw21I	GWGCWC	3 cut(s)	107, 710, 874
Alw26I	GTCTC	1 cut(s)	272
Alw44I	GTGCAC	2 cut(s)	706, 870
AlwI	GGATC	3 cut(s)	212, 518, 916
Ama87I	CYCGRG	1 cut(s)	611
AoxI	GGCC	2 cut(s)	189, 950
ApaLI	GTGCAC	2 cut(s)	706, 870
ApeKI	GCWGC	1 cut(s)	891
ApoI	RAATTY	4 cut(s)	305, 387, 513, 851
Asp700I	GAANNNNTTC	1 cut(s)	388
AspLEI	GCGC	3 cut(s)	578, 881, 883
AsuC2I	CCSGG	1 cut(s)	623
AsuHPI	GGTGA	3 cut(s)	311, 637, 800
AvaI	CYCGRG	1 cut(s)	611
BaeGI	GKGCMC	2 cut(s)	710, 874
BalI	TGGCCA	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	107
Bbv12I	GWGCWC	3 cut(s)	107, 710, 874
BbvI	GCAGC	1 cut(s)	903
BccI	CCATC	3 cut(s)	659, 940, 979
BcgI	CGANNNNNNTGC	4 cut(s)	715, 749, 815, 849
BciT130I	CCWGG	1 cut(s)	572
BcnI	CCSGG	1 cut(s)	623
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	1 cut(s)	982
BfmI	CTRYAG	2 cut(s)	355, 508
BisI	GCNGC	1 cut(s)	892
BlsI	GCNGC	1 cut(s)	893
Bme1390I	CCNGG	2 cut(s)	572, 623
BmeT110I	CYCGRG	1 cut(s)	611
BmrFI	CCNGG	2 cut(s)	572, 623
BmsI	GCATC	2 cut(s)	9, 307
BplI	GAGNNNNNCTC	2 cut(s)	89, 121
Bpu10I	CCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	735
BpuMI	CCSGG	1 cut(s)	623
Bsa29I	ATCGAT	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	272
BsaJI	CCNNGG	5 cut(s)	192, 361, 571, 595, 680
Bsc4I	CCNNNNNNNGG	1 cut(s)	628
Bse118I	RCCGGY	1 cut(s)	262
Bse1I	ACTGG	3 cut(s)	385, 659, 944
BseBI	CCWGG	1 cut(s)	572
BseCI	ATCGAT	1 cut(s)	84
BseDI	CCNNGG	5 cut(s)	192, 361, 571, 595, 680
BseGI	GGATG	2 cut(s)	334, 651
BseLI	CCNNNNNNNGG	1 cut(s)	628
BseMII	CTCAG	3 cut(s)	6, 450, 794
BseNI	ACTGG	3 cut(s)	385, 659, 944
BsePI	GCGCGC	1 cut(s)	879
BseRI	GAGGAG	1 cut(s)	476
BseSI	GKGCMC	2 cut(s)	710, 874
BseXI	GCAGC	1 cut(s)	903
Bsh1236I	CGCG	1 cut(s)	881
BshFI	GGCC	2 cut(s)	191, 952
BshVI	ATCGAT	1 cut(s)	84
BsiHKAI	GWGCWC	3 cut(s)	107, 710, 874
BsiHKCI	CYCGRG	1 cut(s)	611
BsiSI	CCGG	2 cut(s)	263, 623
BslI	CCNNNNNNNGG	1 cut(s)	628
BsmAI	GTCTC	1 cut(s)	272
BsmI	GAATGC	1 cut(s)	826
BsnI	GGCC	2 cut(s)	191, 952
Bso31I	GGTCTC	1 cut(s)	272
BsoBI	CYCGRG	1 cut(s)	611
Bsp1286I	GDGCHC	3 cut(s)	107, 710, 874
Bsp143I	GATC	7 cut(s)	78, 108, 217, 310, 523, 817, 908
BspACI	CCGC	2 cut(s)	340, 894
BspANI	GGCC	2 cut(s)	191, 952
BspCNI	CTCAG	3 cut(s)	7, 451, 795
BspDI	ATCGAT	1 cut(s)	84
BspFNI	CGCG	1 cut(s)	881
BspPI	GGATC	3 cut(s)	212, 518, 916
BspQI	GCTCTTC	1 cut(s)	95
BspTNI	GGTCTC	1 cut(s)	272
BsrFI	RCCGGY	1 cut(s)	262
BsrI	ACTGG	3 cut(s)	385, 659, 944
BssAI	RCCGGY	1 cut(s)	262
BssECI	CCNNGG	5 cut(s)	192, 361, 571, 595, 680
BssHII	GCGCGC	1 cut(s)	879
BssMI	GATC	7 cut(s)	78, 108, 217, 310, 523, 817, 908
BssT1I	CCWWGG	4 cut(s)	192, 361, 595, 680
Bst2UI	CCWGG	1 cut(s)	572
Bst4CI	ACNGT	4 cut(s)	10, 427, 491, 509
Bst6I	CTCTTC	1 cut(s)	95
BstAPI	GCANNNNNTGC	1 cut(s)	869
BstC8I	GCNNGC	3 cut(s)	264, 475, 881
BstDEI	CTNAG	6 cut(s)	15, 243, 393, 459, 803, 875
BstF5I	GGATG	2 cut(s)	334, 651
BstFNI	CGCG	1 cut(s)	881
BstHHI	GCGC	3 cut(s)	578, 881, 883
BstKTI	GATC	7 cut(s)	81, 111, 220, 313, 526, 820, 911
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	7 cut(s)	78, 108, 217, 310, 523, 817, 908
BstMWI	GCNNNNNNNGC	4 cut(s)	148, 584, 869, 878
BstNI	CCWGG	1 cut(s)	572
BstNSI	RCATGY	1 cut(s)	786
BstSCI	CCNGG	2 cut(s)	570, 621
BstSFI	CTRYAG	2 cut(s)	355, 508
BstSLI	GKGCMC	2 cut(s)	710, 874
BstUI	CGCG	1 cut(s)	881
BstV1I	GCAGC	1 cut(s)	903
Bsu15I	ATCGAT	1 cut(s)	84
BsuRI	GGCC	2 cut(s)	191, 952
BsuTUI	ATCGAT	1 cut(s)	84
BtsCI	GGATG	2 cut(s)	334, 651
BtsIMutI	CAGTG	4 cut(s)	12, 24, 666, 951
Cac8I	GCNNGC	3 cut(s)	264, 475, 881
CfoI	GCGC	3 cut(s)	578, 881, 883
Cfr10I	RCCGGY	1 cut(s)	262
ClaI	ATCGAT	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	63
CspCI	CAANNNNNGTGG	2 cut(s)	13, 48
CviAII	CATG	2 cut(s)	581, 783
CviQI	GTAC	1 cut(s)	63
DdeI	CTNAG	6 cut(s)	15, 243, 393, 459, 803, 875
DpnI	GATC	7 cut(s)	80, 110, 219, 312, 525, 819, 910
DpnII	GATC	7 cut(s)	78, 108, 217, 310, 523, 817, 908
EaeI	YGGCCR	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Ecl136II	GAGCTC	1 cut(s)	105
Eco130I	CCWWGG	4 cut(s)	192, 361, 595, 680
Eco24I	GRGCYC	1 cut(s)	107
Eco31I	GGTCTC	1 cut(s)	272
Eco53kI	GAGCTC	1 cut(s)	105
Eco88I	CYCGRG	1 cut(s)	611
EcoICRI	GAGCTC	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	570
EcoT14I	CCWWGG	4 cut(s)	192, 361, 595, 680
EcoT38I	GRGCYC	1 cut(s)	107
ErhI	CCWWGG	4 cut(s)	192, 361, 595, 680
FaeI	CATG	2 cut(s)	584, 786
FaiI	YATR	7 cut(s)	149, 167, 357, 432, 582, 784, 839
FatI	CATG	2 cut(s)	580, 782
FauI	CCCGC	1 cut(s)	347
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	1 cut(s)	892
FokI	GGATG	2 cut(s)	341, 638
FriOI	GRGCYC	1 cut(s)	107
Fsp4HI	GCNGC	1 cut(s)	892
FspBI	CTAG	1 cut(s)	982
GlaI	GCGC	3 cut(s)	577, 880, 882
GluI	GCNGC	1 cut(s)	892
HaeIII	GGCC	2 cut(s)	191, 952
HapII	CCGG	2 cut(s)	263, 623
HhaI	GCGC	3 cut(s)	578, 881, 883
Hin1II	CATG	2 cut(s)	584, 786
Hin6I	GCGC	3 cut(s)	576, 879, 881
HinP1I	GCGC	3 cut(s)	576, 879, 881
HincII	GTYRAC	3 cut(s)	43, 378, 505
HindII	GTYRAC	3 cut(s)	43, 378, 505
HindIII	AAGCTT	2 cut(s)	155, 585
HinfI	GANTC	6 cut(s)	116, 134, 181, 664, 776, 957
HpaI	GTTAAC	1 cut(s)	378
HpaII	CCGG	2 cut(s)	263, 623
HphI	GGTGA	3 cut(s)	311, 637, 800
Hpy166II	GTNNAC	6 cut(s)	43, 378, 494, 505, 708, 872
Hpy188I	TCNGA	4 cut(s)	222, 439, 688, 804
Hpy188III	TCNNGA	2 cut(s)	172, 314
Hpy8I	GTNNAC	6 cut(s)	43, 378, 494, 505, 708, 872
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	3 cut(s)	216, 319, 363
HpyCH4III	ACNGT	4 cut(s)	10, 427, 491, 509
HpyCH4V	TGCA	7 cut(s)	151, 708, 726, 782, 826, 872, 891
HpyF10VI	GCNNNNNNNGC	4 cut(s)	148, 584, 869, 878
HpyF3I	CTNAG	6 cut(s)	15, 243, 393, 459, 803, 875
Hsp92II	CATG	2 cut(s)	584, 786
HspAI	GCGC	3 cut(s)	576, 879, 881
KroI	GCCGGC	1 cut(s)	262
KroNI	GCCGGC	1 cut(s)	264
KspAI	GTTAAC	1 cut(s)	378
Kzo9I	GATC	7 cut(s)	78, 108, 217, 310, 523, 817, 908
LguI	GCTCTTC	1 cut(s)	95
Lsp1109I	GCAGC	1 cut(s)	903
LweI	GCATC	2 cut(s)	9, 307
MaeI	CTAG	1 cut(s)	982
MaeIII	GTNAC	4 cut(s)	10, 454, 485, 793
MalI	GATC	7 cut(s)	80, 110, 219, 312, 525, 819, 910
MboI	GATC	7 cut(s)	78, 108, 217, 310, 523, 817, 908
MfeI	CAATTG	2 cut(s)	821, 886
MhlI	GDGCHC	3 cut(s)	107, 710, 874
MlsI	TGGCCA	1 cut(s)	191
MluCI	AATT	8 cut(s)	93, 254, 305, 387, 513, 821, 851, 886
MluNI	TGGCCA	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	886
Mox20I	TGGCCA	1 cut(s)	191
MroNI	GCCGGC	1 cut(s)	262
MroXI	GAANNNNTTC	1 cut(s)	388
MscI	TGGCCA	1 cut(s)	191
MseI	TTAA	3 cut(s)	51, 377, 590
MslI	CAYNNNNRTG	1 cut(s)	17
Msp20I	TGGCCA	1 cut(s)	191
MspA1I	CMGCKG	1 cut(s)	894
MspI	CCGG	2 cut(s)	263, 623
MspR9I	CCNGG	2 cut(s)	572, 623
MunI	CAATTG	2 cut(s)	821, 886
Mva1269I	GAATGC	1 cut(s)	826
MvaI	CCWGG	1 cut(s)	572
MvnI	CGCG	1 cut(s)	881
MwoI	GCNNNNNNNGC	4 cut(s)	148, 584, 869, 878
NaeI	GCCGGC	1 cut(s)	264
NciI	CCSGG	1 cut(s)	623
NdeII	GATC	7 cut(s)	78, 108, 217, 310, 523, 817, 908
NgoMIV	GCCGGC	1 cut(s)	262
NlaIII	CATG	2 cut(s)	584, 786
NmeAIII	GCCGAG	1 cut(s)	118
NmuCI	GTSAC	2 cut(s)	10, 454
NspI	RCATGY	1 cut(s)	786
PauI	GCGCGC	1 cut(s)	879
PciSI	GCTCTTC	1 cut(s)	95
PctI	GAATGC	1 cut(s)	826
PdiI	GCCGGC	1 cut(s)	264
PdmI	GAANNNNTTC	1 cut(s)	388
PfeI	GAWTC	6 cut(s)	116, 134, 181, 664, 776, 957
PkrI	GCNGC	1 cut(s)	893
Psp124BI	GAGCTC	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	570
PspGI	CCWGG	1 cut(s)	570
PteI	GCGCGC	1 cut(s)	879
RsaI	GTAC	1 cut(s)	64
RsaNI	GTAC	1 cut(s)	63
RseI	CAYNNNNRTG	1 cut(s)	17
SacI	GAGCTC	1 cut(s)	107
SalI	GTCGAC	1 cut(s)	41
SapI	GCTCTTC	1 cut(s)	95
SaqAI	TTAA	3 cut(s)	51, 377, 590
SatI	GCNGC	1 cut(s)	892
Sau3AI	GATC	7 cut(s)	78, 108, 217, 310, 523, 817, 908
ScrFI	CCNGG	2 cut(s)	572, 623
SduI	GDGCHC	3 cut(s)	107, 710, 874
SfaNI	GCATC	2 cut(s)	9, 307
SfcI	CTRYAG	2 cut(s)	355, 508
SmiMI	CAYNNNNRTG	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	750
SmoI	CTYRAG	1 cut(s)	750
Sse9I	AATT	8 cut(s)	93, 254, 305, 387, 513, 821, 851, 886
SsiI	CCGC	2 cut(s)	340, 894
SspMI	CTAG	1 cut(s)	982
SstI	GAGCTC	1 cut(s)	107
StyD4I	CCNGG	2 cut(s)	570, 621
StyI	CCWWGG	4 cut(s)	192, 361, 595, 680
TaaI	ACNGT	4 cut(s)	10, 427, 491, 509
TaqI	TCGA	7 cut(s)	42, 84, 107, 541, 735, 964, 974
TasI	AATT	8 cut(s)	93, 254, 305, 387, 513, 821, 851, 886
TfiI	GAWTC	6 cut(s)	116, 134, 181, 664, 776, 957
Tru1I	TTAA	3 cut(s)	51, 377, 590
Tru9I	TTAA	3 cut(s)	51, 377, 590
TscAI	CASTG	4 cut(s)	19, 31, 666, 951
TseFI	GTSAC	2 cut(s)	10, 454
TseI	GCWGC	1 cut(s)	891
Tsp45I	GTSAC	2 cut(s)	10, 454
TspDTI	ATGAA	2 cut(s)	597, 708
TspGWI	ACGGA	1 cut(s)	128
TspRI	CASTG	4 cut(s)	19, 31, 666, 951
VneI	GTGCAC	2 cut(s)	706, 870
XapI	RAATTY	4 cut(s)	305, 387, 513, 851
XceI	RCATGY	1 cut(s)	786
XmiI	GTMKAC	1 cut(s)	42
XmnI	GAANNNNTTC	1 cut(s)	388
XspI	CTAG	1 cut(s)	982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.