Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013871

Physical Location & Seq

Genomic Coordinates Forward (+)

20235465 .. 20237358

Gene Structure 1894 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G54200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGATCCTTGGGATACTTATAACATACCACTAGACCACCAACACCGTCTCCGTAACCGCCGTGACCACCGTCATCCTTCCTTCTCCTCTACTCTCCTCGACCAAATTTACCGCTCCATCGACGATTCCTCTACTAACTCCTCATCCATGAGAAAAACCAAACATCAGAACCGCGAGGACACGCGTGTTTCTGCTAACCGCCGCGACGATTTCAACAGATCCAAGAATCTTAAAACCATAGAACCTGTTTTCTTCAAACATTCAAGCTCAAGCTCCTCTGACTCAAGCGGATTCTCGTCTTCCGAGTCTGATTATTTCTACAGACGATCTAAATCCTCGCCGGCGATTTCTCATCCTAAACCGATACGAACCACCGTGGAACGATTCGAAAGATCTCCTCAGAATCACCGACCTAACAGTAGTAATAAACAAGAACATGGAAGCTTTCTCAAAACGAAATCTAAAGCGTTGAAGATTTATAGCGATTTGAAGAAAGTGAAACAACCGATTTCTCCCGGTGGTCGTCTCGCTACTTTCCTTAACTCCATATTCACCGGCGCCGGAAACACTAAAAAACTTAACAAAATCAACACAACCGTCACTTCCACCACCGCCGCCGCCGCCGCAGCGTCATCAACCACTACATGCTCCTCTGCTTCATCATTCTCCAGATCTTGCTTGAGCAAAACGCCATCGTCTAGCGAAAAATCGAAAAGATCCGTACGTTTTTGTCCCGTCAACGTCATCTTCGACGAAGACTCCTCCAAGTACAACAACAAGAACAACAAAGTGTACGGAAACAACGAACGTGAATATGAATCCATTCGTCATACTCTAGAGAACCGAGTCATGGAAGAGAATCGTCGTGTAATCGAAGCAGCTAAAGAACTTCTGAGAAGTTACCAGAAGAAGAATAAAGAAGTCATTGAAGTCTCCGTCGAAGACGATGAAGAAGACGACGATGATGATGCGTTGAGTTGCACAAGCTCTGATCTGTTCGAGTTGGATAATTTGTCGGCGATAGGAATCGATAGGTATAGAGAGGAGCTTCCGGTTTACGAAACAACTCGCTTGAACACTAATCGTATCATTTCTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007623 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009733 GO:0009914 GO:0009966 GO:0009967 GO:0010033 GO:0010646 GO:0010647 GO:0010817 GO:0010928 GO:0010929 GO:0016020 GO:0023051 GO:0023056 GO:0040008 GO:0042221 GO:0044464 GO:0048511 GO:0048518 GO:0048522 GO:0048580 GO:0048583 GO:0048584 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080050 GO:0080113 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

366

Amino Acids

41.77

Weight (kDa)

9.35

Isoelectric Point (pI)

62.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54200 AT3G13980
fragaria_vesca	FvH4_6g34500
malus_domestica	MD09G1185600.v1.1 MD17G1170300.v1.1
prunus_persica	Prupe.3G043400_v2.0.a1
pyrus_communis	pycom09g10290 pycom12419g00180
rosa_chinensis	RchiOBHm_Chr2g0144811
rosa_laevigata	RLG00000020115
rosa_multiflora	Rmu_sc0002354.1_g000024
rosa_roxburghii	Rroxscaffold_2G00100950
rosa_rugosa	Rorug02G0390000
rosa_samantha	Rh2AG441700 Rh2BG452300 Rh2DG462100
rosa_wichuraiana	Rw2G036120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	21
AccB1I	GGYRCC	1 cut(s)	557
AccBSI	CCGCTC	1 cut(s)	114
AccII	CGCG	3 cut(s)	174, 184, 204
AclWI	GGATC	3 cut(s)	12, 213, 711
AcsI	RAATTY	1 cut(s)	105
AcyI	GRCGYC	1 cut(s)	558
AfaI	GTAC	3 cut(s)	723, 770, 794
AfiI	CCNNNNNNNGG	1 cut(s)	850
AflIII	ACRYGT	1 cut(s)	182
AgsI	TTSAA	7 cut(s)	214, 256, 264, 472, 490, 929, 1075
AluBI	AGCT	6 cut(s)	267, 273, 444, 881, 987, 1048
AluI	AGCT	6 cut(s)	267, 273, 444, 881, 987, 1048
Alw26I	GTCTC	3 cut(s)	53, 530, 937
AlwI	GGATC	3 cut(s)	12, 213, 711
ApeKI	GCWGC	2 cut(s)	626, 878
ApoI	RAATTY	1 cut(s)	105
Asp700I	GAANNNNTTC	1 cut(s)	822
AspLEI	GCGC	1 cut(s)	560
AsuC2I	CCSGG	1 cut(s)	516
AsuHPI	GGTGA	2 cut(s)	398, 544
AsuII	TTCGAA	1 cut(s)	387
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	557
BbsI	GAAGAC	4 cut(s)	291, 762, 948, 960
BbvI	GCAGC	2 cut(s)	638, 890
BccI	CCATC	2 cut(s)	125, 700
BceAI	ACGGC	1 cut(s)	45
BcgI	CGANNNNNNTGC	2 cut(s)	950, 984
BciVI	GTATCC	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	516
BcoDI	GTCTC	3 cut(s)	53, 530, 937
BfaI	CTAG	4 cut(s)	32, 699, 836, 1095
BfmI	CTRYAG	1 cut(s)	319
BfoI	RGCGCY	1 cut(s)	561
BfuI	GTATCC	1 cut(s)	7
BglII	AGATCT	2 cut(s)	392, 671
BisI	GCNGC	7 cut(s)	202, 615, 618, 621, 624, 627, 879
BlsI	GCNGC	7 cut(s)	203, 616, 619, 622, 625, 628, 880
Bme1390I	CCNGG	1 cut(s)	516
BmiI	GGNNCC	2 cut(s)	6, 559
BmrFI	CCNGG	1 cut(s)	516
BmsI	GCATC	1 cut(s)	958
BoxI	GACNNNNGTC	1 cut(s)	69
BpiI	GAAGAC	4 cut(s)	291, 762, 948, 960
BpmI	CTGGAG	1 cut(s)	652
Bpu14I	TTCGAA	1 cut(s)	387
BpuEI	CTTGAG	3 cut(s)	253, 268, 700
BpuMI	CCSGG	1 cut(s)	516
Bsa29I	ATCGAT	1 cut(s)	1029
BsaBI	GATNNNNATC	2 cut(s)	331, 1025
BsaHI	GRCGYC	1 cut(s)	558
BsaJI	CCNNGG	2 cut(s)	8, 375
BsaWI	WCCGGW	1 cut(s)	1051
BsaXI	ACNNNNNCTCC	4 cut(s)	33, 63, 743, 773
Bsc4I	CCNNNNNNNGG	1 cut(s)	850
Bse118I	RCCGGY	2 cut(s)	340, 554
Bse8I	GATNNNNATC	2 cut(s)	331, 1025
BseCI	ATCGAT	1 cut(s)	1029
BseDI	CCNNGG	2 cut(s)	8, 375
BseGI	GGATG	3 cut(s)	73, 143, 352
BseJI	GATNNNNATC	2 cut(s)	331, 1025
BseLI	CCNNNNNNNGG	1 cut(s)	850
BseMII	CTCAG	2 cut(s)	413, 884
BseRI	GAGGAG	8 cut(s)	76, 86, 130, 265, 387, 640, 751, 1058
BseXI	GCAGC	2 cut(s)	638, 890
Bsh1236I	CGCG	3 cut(s)	174, 184, 204
BshNI	GGYRCC	1 cut(s)	557
BshVI	ATCGAT	1 cut(s)	1029
BsiSI	CCGG	5 cut(s)	341, 516, 555, 561, 1052
BsiWI	CGTACG	1 cut(s)	721
BslFI	GGGAC	1 cut(s)	717
BslI	CCNNNNNNNGG	1 cut(s)	850
BsmAI	GTCTC	3 cut(s)	53, 530, 937
BsmBI	CGTCTC	2 cut(s)	53, 530
BsmFI	GGGAC	1 cut(s)	717
Bsp119I	TTCGAA	1 cut(s)	387
Bsp143I	GATC	7 cut(s)	4, 218, 326, 392, 671, 716, 991
BspCNI	CTCAG	2 cut(s)	412, 885
BspDI	ATCGAT	1 cut(s)	1029
BspFNI	CGCG	3 cut(s)	174, 184, 204
BspLI	GGNNCC	2 cut(s)	6, 559
BspPI	GGATC	3 cut(s)	12, 213, 711
BspT104I	TTCGAA	1 cut(s)	387
BspT107I	GGYRCC	1 cut(s)	557
BsrBI	CCGCTC	1 cut(s)	114
BsrFI	RCCGGY	2 cut(s)	340, 554
BssAI	RCCGGY	2 cut(s)	340, 554
BssECI	CCNNGG	2 cut(s)	8, 375
BssMI	GATC	7 cut(s)	4, 218, 326, 392, 671, 716, 991
BssNI	GRCGYC	1 cut(s)	558
BssT1I	CCWWGG	1 cut(s)	8
Bst4CI	ACNGT	5 cut(s)	47, 71, 376, 419, 598
Bst6I	CTCTTC	1 cut(s)	849
BstACI	GRCGYC	1 cut(s)	558
BstBI	TTCGAA	1 cut(s)	387
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	2 cut(s)	399, 893
BstDSI	CCRYGG	1 cut(s)	375
BstF5I	GGATG	3 cut(s)	73, 143, 352
BstFNI	CGCG	3 cut(s)	174, 184, 204
BstH2I	RGCGCY	1 cut(s)	561
BstHHI	GCGC	1 cut(s)	560
BstKTI	GATC	7 cut(s)	7, 221, 329, 395, 674, 719, 994
BstMAI	GTCTC	3 cut(s)	53, 530, 937
BstMBI	GATC	7 cut(s)	4, 218, 326, 392, 671, 716, 991
BstMWI	GCNNNNNNNGC	3 cut(s)	620, 623, 626
BstNSI	RCATGY	1 cut(s)	648
BstPAI	GACNNNNGTC	1 cut(s)	69
BstSCI	CCNGG	1 cut(s)	514
BstSFI	CTRYAG	1 cut(s)	319
BstUI	CGCG	3 cut(s)	174, 184, 204
BstV1I	GCAGC	2 cut(s)	638, 890
BstV2I	GAAGAC	4 cut(s)	291, 762, 948, 960
BstX2I	RGATCY	5 cut(s)	4, 218, 392, 671, 716
BstYI	RGATCY	5 cut(s)	4, 218, 392, 671, 716
Bsu15I	ATCGAT	1 cut(s)	1029
BsuI	GTATCC	1 cut(s)	7
BsuTUI	ATCGAT	1 cut(s)	1029
BtgI	CCRYGG	1 cut(s)	375
BtsCI	GGATG	3 cut(s)	73, 143, 352
Cac8I	GCNNGC	1 cut(s)	342
CfoI	GCGC	1 cut(s)	560
Cfr10I	RCCGGY	2 cut(s)	340, 554
ClaI	ATCGAT	1 cut(s)	1029
CseI	GACGC	1 cut(s)	618
Csp6I	GTAC	3 cut(s)	722, 769, 793
CviAII	CATG	4 cut(s)	148, 437, 645, 850
CviJI	RGCY	6 cut(s)	267, 273, 444, 881, 987, 1048
CviKI_1	RGCY	6 cut(s)	267, 273, 444, 881, 987, 1048
CviQI	GTAC	3 cut(s)	722, 769, 793
DdeI	CTNAG	2 cut(s)	399, 893
DinI	GGCGCC	1 cut(s)	559
DpnI	GATC	7 cut(s)	6, 220, 328, 394, 673, 718, 993
DpnII	GATC	7 cut(s)	4, 218, 326, 392, 671, 716, 991
Eam1104I	CTCTTC	1 cut(s)	849
EarI	CTCTTC	1 cut(s)	849
Eco130I	CCWWGG	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	8
EgeI	GGCGCC	1 cut(s)	559
EheI	GGCGCC	1 cut(s)	559
ErhI	CCWWGG	1 cut(s)	8
Esp3I	CGTCTC	2 cut(s)	53, 530
FaeI	CATG	4 cut(s)	151, 440, 648, 853
FaqI	GGGAC	1 cut(s)	717
FatI	CATG	4 cut(s)	147, 436, 644, 849
Fnu4HI	GCNGC	7 cut(s)	202, 615, 618, 621, 624, 627, 879
FokI	GGATG	3 cut(s)	60, 130, 339
Fsp4HI	GCNGC	7 cut(s)	202, 615, 618, 621, 624, 627, 879
FspBI	CTAG	4 cut(s)	32, 699, 836, 1095
GlaI	GCGC	1 cut(s)	559
GluI	GCNGC	7 cut(s)	202, 615, 618, 621, 624, 627, 879
GsuI	CTGGAG	1 cut(s)	652
HaeII	RGCGCY	1 cut(s)	561
HapII	CCGG	5 cut(s)	341, 516, 555, 561, 1052
HgaI	GACGC	1 cut(s)	618
HhaI	GCGC	1 cut(s)	560
Hin1I	GRCGYC	1 cut(s)	558
Hin1II	CATG	4 cut(s)	151, 440, 648, 853
Hin6I	GCGC	1 cut(s)	558
HinP1I	GCGC	1 cut(s)	558
HincII	GTYRAC	1 cut(s)	739
HindII	GTYRAC	1 cut(s)	739
HindIII	AAGCTT	1 cut(s)	442
HpaII	CCGG	5 cut(s)	341, 516, 555, 561, 1052
HphI	GGTGA	2 cut(s)	398, 544
Hpy166II	GTNNAC	3 cut(s)	739, 793, 1057
Hpy188I	TCNGA	7 cut(s)	168, 280, 304, 310, 402, 894, 991
Hpy188III	TCNNGA	3 cut(s)	669, 836, 1095
Hpy8I	GTNNAC	3 cut(s)	739, 793, 1057
Hpy99I	CGWCG	6 cut(s)	125, 209, 755, 867, 941, 962
HpyAV	CCTTC	2 cut(s)	87, 91
HpyCH4III	ACNGT	5 cut(s)	47, 71, 376, 419, 598
HpyCH4IV	ACGT	3 cut(s)	724, 741, 808
HpyCH4V	TGCA	1 cut(s)	981
HpyF10VI	GCNNNNNNNGC	3 cut(s)	620, 623, 626
HpyF3I	CTNAG	2 cut(s)	399, 893
HpySE526I	ACGT	3 cut(s)	724, 741, 808
Hsp92I	GRCGYC	1 cut(s)	558
Hsp92II	CATG	4 cut(s)	151, 440, 648, 853
HspAI	GCGC	1 cut(s)	558
KasI	GGCGCC	1 cut(s)	557
KroI	GCCGGC	1 cut(s)	340
KroNI	GCCGGC	1 cut(s)	342
Kzo9I	GATC	7 cut(s)	4, 218, 326, 392, 671, 716, 991
LmnI	GCTCC	4 cut(s)	119, 278, 653, 1045
LpnPI	CCDG	8 cut(s)	258, 354, 529, 568, 574, 682, 917, 1065
Lsp1109I	GCAGC	2 cut(s)	638, 890
LweI	GCATC	1 cut(s)	958
MaeI	CTAG	4 cut(s)	32, 699, 836, 1095
MaeII	ACGT	3 cut(s)	724, 741, 808
MaeIII	GTNAC	4 cut(s)	53, 62, 598, 899
MalI	GATC	7 cut(s)	6, 220, 328, 394, 673, 718, 993
MbiI	CCGCTC	1 cut(s)	114
MboI	GATC	7 cut(s)	4, 218, 326, 392, 671, 716, 991
MflI	RGATCY	5 cut(s)	4, 218, 392, 671, 716
MluCI	AATT	2 cut(s)	105, 1009
MluI	ACGCGT	1 cut(s)	182
Mly113I	GGCGCC	1 cut(s)	558
MlyI	GAGTC	4 cut(s)	275, 314, 752, 855
MmeI	TCCRAC	1 cut(s)	984
MreI	CGCCGGCG	1 cut(s)	340
MroNI	GCCGGC	1 cut(s)	340
MroXI	GAANNNNTTC	1 cut(s)	822
MseI	TTAA	3 cut(s)	231, 540, 579
MspI	CCGG	5 cut(s)	341, 516, 555, 561, 1052
MspR9I	CCNGG	1 cut(s)	516
MvnI	CGCG	3 cut(s)	174, 184, 204
MwoI	GCNNNNNNNGC	3 cut(s)	620, 623, 626
NaeI	GCCGGC	1 cut(s)	342
NarI	GGCGCC	1 cut(s)	558
NciI	CCSGG	1 cut(s)	516
NdeII	GATC	7 cut(s)	4, 218, 326, 392, 671, 716, 991
NgoMIV	GCCGGC	1 cut(s)	340
NlaIII	CATG	4 cut(s)	151, 440, 648, 853
NlaIV	GGNNCC	2 cut(s)	6, 559
NmuCI	GTSAC	2 cut(s)	62, 598
NspI	RCATGY	1 cut(s)	648
NspV	TTCGAA	1 cut(s)	387
PcsI	WCGNNNNNNNCGW	2 cut(s)	747, 801
PdiI	GCCGGC	1 cut(s)	342
PdmI	GAANNNNTTC	1 cut(s)	822
PfeI	GAWTC	8 cut(s)	125, 226, 291, 384, 403, 818, 859, 1026
Pfl23II	CGTACG	1 cut(s)	721
PkrI	GCNGC	7 cut(s)	203, 616, 619, 622, 625, 628, 880
PleI	GAGTC	4 cut(s)	275, 313, 752, 854
PluTI	GGCGCC	1 cut(s)	561
PpsI	GAGTC	4 cut(s)	275, 313, 752, 854
PshAI	GACNNNNGTC	1 cut(s)	69
PsiI	TTATAA	1 cut(s)	21
PspLI	CGTACG	1 cut(s)	721
PspN4I	GGNNCC	2 cut(s)	6, 559
PsuI	RGATCY	5 cut(s)	4, 218, 392, 671, 716
RsaI	GTAC	3 cut(s)	723, 770, 794
RsaNI	GTAC	3 cut(s)	722, 769, 793
SaqAI	TTAA	3 cut(s)	231, 540, 579
SatI	GCNGC	7 cut(s)	202, 615, 618, 621, 624, 627, 879
Sau3AI	GATC	7 cut(s)	4, 218, 326, 392, 671, 716, 991
SchI	GAGTC	4 cut(s)	275, 314, 752, 855
ScrFI	CCNGG	1 cut(s)	516
SfaNI	GCATC	1 cut(s)	958
SfcI	CTRYAG	1 cut(s)	319
SfoI	GGCGCC	1 cut(s)	559
SfuI	TTCGAA	1 cut(s)	387
SgrAI	CRCCGGYG	2 cut(s)	340, 554
SmlI	CTYRAG	3 cut(s)	268, 283, 679
SmoI	CTYRAG	3 cut(s)	268, 283, 679
Sse9I	AATT	2 cut(s)	105, 1009
SspDI	GGCGCC	1 cut(s)	557
SspMI	CTAG	4 cut(s)	32, 699, 836, 1095
StyD4I	CCNGG	1 cut(s)	514
StyI	CCWWGG	1 cut(s)	8
TaaI	ACNGT	5 cut(s)	47, 71, 376, 419, 598
TaiI	ACGT	3 cut(s)	727, 744, 811
TaqI	TCGA	9 cut(s)	99, 120, 387, 710, 750, 873, 939, 999, 1029
TasI	AATT	2 cut(s)	105, 1009
TatI	WGTACW	1 cut(s)	768
TauI	GCSGC	5 cut(s)	204, 617, 620, 623, 626
TfiI	GAWTC	8 cut(s)	125, 226, 291, 384, 403, 818, 859, 1026
Tru1I	TTAA	3 cut(s)	231, 540, 579
Tru9I	TTAA	3 cut(s)	231, 540, 579
TseFI	GTSAC	2 cut(s)	62, 598
TseI	GCWGC	2 cut(s)	626, 878
Tsp45I	GTSAC	2 cut(s)	62, 598
TspDTI	ATGAA	3 cut(s)	648, 831, 963
TspGWI	ACGGA	4 cut(s)	41, 709, 810, 925
XapI	RAATTY	1 cut(s)	105
XbaI	TCTAGA	2 cut(s)	835, 1094
XceI	RCATGY	1 cut(s)	648
XmnI	GAANNNNTTC	1 cut(s)	822
XspI	CTAG	4 cut(s)	32, 699, 836, 1095

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.