Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013871

Physical Location & Seq

Genomic Coordinates Reverse (-)

3081574 .. 3082953

Gene Structure 1380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G043400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGGAGAAGTGGGATATCAAAACACTGCAAAAAAACCGAGAAGCTCGAAGCAACCGACATAGTAGAGAAAACCCATCTTTCTCCTCCACTCTCCTCGACACCATTTACCGTTCGATCGACGAACCCAACACCGGTGAAGGAGTTTCAAGAAGAGAAGAGCAACAACACCTTATCTTCTACAAAGAAACCACGAAGAAAAAACAGAGCACCACCGCTGCTGCTGCTGCTGCTACTACTACCAGTGGCCGCCATGGCCTCTTCAAAGAAGACCGGGAACATGAAATTATGAGCCTCCGAAGAGCCTGCTTGATCGAAAAGTGGATGGAGAAGAAAGCGACTGATAAGTCCTTACCTGTTCGACGAAATTCCATGGCGGATTTTGACACGAAAAAGTCGAGCTACAATCGTAATGAGTTCCTTTTGAATTCGAGCTCCAGCTCTTCGGACTCGAGCTGCGGTGGTGGGTTTTCTTCATCCGAGTCAGAGTCCATGTACGGATCAAAATCGAGGTCGTCGTCGTCATGCTACAGCATGCACAGGCCTAAGCCAATTCGAACCAGCATTTCATCCGAGAAGGTTCAATTTGAGCAGAGAAATCACCATAATTCACAGAAGACAAAGCACGAGAACAGTTTTGTGAAGACGAAATCGAAAGCGTTGAAGATTTACGGCGATTTGAAGAAGGTGAGGCAGCCAATTTCGCCGGGTGGCCGGCTCGCGAGTTTTCTCAACTCTCTGTTTAATGCAGGGCATGTGAAGAAGTCGAAAATTGATGGTTTGGGTGTGGAGAGAAAACCATCATACGATTTGGGTGCGGAGAGAAAATCATCCTCAAAATCTGGACAACAGGGGCATTCAAACTCGAGCAGCACTTGTTCCTCAGCCTCTTCTTTTTCGAGGTCTTGTCTGCGAAAAACGCCTCTTTCGAGAAGCGAGCTGAGTGGCATCGGCAGCAACAATGGAGATGTCGCAAAAAGGTCAGTGAGGTTCTGCCCTGTGAGTGTGATTGTGGACGAGGACTGTCAGCCATGCGGGCAGAAGACTCTGCATGAAGCAGAGCCGGGTTTAATGGCGGCGGAGAAAGCCGCGAAACCTCCAACAATTGAAGATATTAGGTTTGAGTGCTGTGTAATGGAGGTTGATGACGACGACGAACACCGTCGGAGAGTTGAGCAAGTTGCTAGAGATTACTTATTGTTGAAGAATTATCAGAAGAAGAATGTTGAAGAAGAAGATGATGACGCAGAGAGTTATGCAAGCTCTGATCTGTTTGAGTTGGATACTGCCGGGGTTGAAGAAAGGTACCGTGAAGAATTGCCGGTGTATGAGACTACCTTTTTCGACAGAAATCGAGCCATTTCTAATCGTTTGATTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009733 GO:0009914 GO:0009966 GO:0009967 GO:0010033 GO:0010646 GO:0010647 GO:0010817 GO:0010928 GO:0010929 GO:0016020 GO:0023051 GO:0023056 GO:0040008 GO:0042221 GO:0044464 GO:0048518 GO:0048522 GO:0048580 GO:0048583 GO:0048584 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080050 GO:0080113 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

460

Amino Acids

51.72

Weight (kDa)

8.89

Isoelectric Point (pI)

62.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54200 AT3G13980
fragaria_vesca	FvH4_6g34500
malus_domestica	MD09G1185600.v1.1 MD17G1170300.v1.1
prunus_persica	Prupe.3G043400_v2.0.a1
pyrus_communis	pycom09g10290 pycom12419g00180
rosa_chinensis	RchiOBHm_Chr2g0144811
rosa_laevigata	RLG00000020115
rosa_multiflora	Rmu_sc0002354.1_g000024
rosa_roxburghii	Rroxscaffold_2G00100950
rosa_rugosa	Rorug02G0390000
rosa_samantha	Rh2AG441700 Rh2BG452300 Rh2DG462100
rosa_wichuraiana	Rw2G036120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	343
Acc65I	GGTACC	1 cut(s)	1302
AccB1I	GGYRCC	1 cut(s)	1302
AccII	CGCG	2 cut(s)	719, 1088
AciI	CCGC	9 cut(s)	213, 247, 374, 456, 815, 1032, 1073, 1076, 1086
AclWI	GGATC	1 cut(s)	505
AcoI	YGGCCR	2 cut(s)	244, 709
AcsI	RAATTY	2 cut(s)	364, 424
AfaI	GTAC	2 cut(s)	494, 1304
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgeI	ACCGGT	1 cut(s)	131
AluBI	AGCT	7 cut(s)	44, 399, 432, 438, 453, 937, 1260
AluI	AGCT	7 cut(s)	44, 399, 432, 438, 453, 937, 1260
Alw21I	GWGCWC	2 cut(s)	209, 434
Alw26I	GTCTC	1 cut(s)	1322
AlwI	GGATC	1 cut(s)	505
Ama87I	CYCGRG	2 cut(s)	448, 862
AoxI	GGCC	4 cut(s)	244, 253, 539, 709
ApeKI	GCWGC	9 cut(s)	215, 218, 221, 224, 227, 453, 691, 867, 951
ApoI	RAATTY	2 cut(s)	364, 424
ArsI	GACNNNNNNTTYG	2 cut(s)	494, 526
AsiGI	ACCGGT	1 cut(s)	131
Asp718I	GGTACC	1 cut(s)	1302
AsuC2I	CCSGG	4 cut(s)	272, 705, 1062, 1288
AsuHPI	GGTGA	3 cut(s)	146, 590, 697
AsuII	TTCGAA	1 cut(s)	553
AvaI	CYCGRG	2 cut(s)	448, 862
BanI	GGYRCC	1 cut(s)	1302
BanII	GRGCYC	1 cut(s)	434
BauI	CACGAG	1 cut(s)	623
BbsI	GAAGAC	4 cut(s)	273, 620, 647, 1046
Bbv12I	GWGCWC	2 cut(s)	209, 434
BbvCI	CCTCAGC	1 cut(s)	880
BbvI	GCAGC	9 cut(s)	202, 205, 208, 211, 214, 440, 703, 879, 963
BccI	CCATC	4 cut(s)	82, 316, 767, 805
BceAI	ACGGC	1 cut(s)	685
BcgI	CGANNNNNNTGC	4 cut(s)	285, 319, 794, 828
BciVI	GTATCC	1 cut(s)	1273
BcnI	CCSGG	4 cut(s)	272, 705, 1062, 1288
BcoDI	GTCTC	1 cut(s)	1322
BfaI	CTAG	1 cut(s)	1182
BfmI	CTRYAG	1 cut(s)	526
BfuI	GTATCC	1 cut(s)	1273
BglI	GCCNNNNNGGC	2 cut(s)	252, 1033
Bme1390I	CCNGG	4 cut(s)	272, 705, 1062, 1288
BmeT110I	CYCGRG	2 cut(s)	448, 862
BmiI	GGNNCC	1 cut(s)	1304
BmrFI	CCNGG	4 cut(s)	272, 705, 1062, 1288
BmsI	GCATC	1 cut(s)	954
BpiI	GAAGAC	4 cut(s)	273, 620, 647, 1046
BpmI	CTGGAG	1 cut(s)	418
Bpu10I	CCTNAGC	2 cut(s)	543, 880
Bpu14I	TTCGAA	1 cut(s)	553
BpuMI	CCSGG	4 cut(s)	272, 705, 1062, 1288
BsaBI	GATNNNNATC	1 cut(s)	502
BsaJI	CCNNGG	3 cut(s)	250, 369, 1287
BsaWI	WCCGGW	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse118I	RCCGGY	3 cut(s)	131, 711, 1318
Bse1I	ACTGG	1 cut(s)	240
Bse8I	GATNNNNATC	1 cut(s)	502
BseDI	CCNNGG	3 cut(s)	250, 369, 1287
BseGI	GGATG	4 cut(s)	327, 473, 566, 827
BseJI	GATNNNNATC	1 cut(s)	502
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMII	CTCAG	2 cut(s)	894, 929
BseNI	ACTGG	1 cut(s)	240
BseRI	GAGGAG	2 cut(s)	73, 83
BseXI	GCAGC	9 cut(s)	202, 205, 208, 211, 214, 440, 703, 879, 963
Bsh1236I	CGCG	2 cut(s)	719, 1088
Bsh1285I	CGRYCG	1 cut(s)	117
BshFI	GGCC	4 cut(s)	246, 255, 541, 711
BshNI	GGYRCC	1 cut(s)	1302
BshTI	ACCGGT	1 cut(s)	131
BsiEI	CGRYCG	1 cut(s)	117
BsiHKAI	GWGCWC	2 cut(s)	209, 434
BsiHKCI	CYCGRG	2 cut(s)	448, 862
BsiSI	CCGG	7 cut(s)	132, 271, 704, 712, 1061, 1287, 1319
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmAI	GTCTC	1 cut(s)	1322
BsmI	GAATGC	1 cut(s)	853
BsnI	GGCC	4 cut(s)	246, 255, 541, 711
BsoBI	CYCGRG	2 cut(s)	448, 862
Bsp119I	TTCGAA	1 cut(s)	553
Bsp1286I	GDGCHC	2 cut(s)	209, 434
Bsp143I	GATC	4 cut(s)	114, 309, 497, 1264
Bsp19I	CCATGG	2 cut(s)	250, 369
Bsp68I	TCGCGA	1 cut(s)	719
BspACI	CCGC	9 cut(s)	213, 247, 374, 456, 815, 1032, 1073, 1076, 1086
BspANI	GGCC	4 cut(s)	246, 255, 541, 711
BspCNI	CTCAG	2 cut(s)	893, 930
BspFNI	CGCG	2 cut(s)	719, 1088
BspLI	GGNNCC	1 cut(s)	1304
BspPI	GGATC	1 cut(s)	505
BspQI	GCTCTTC	3 cut(s)	150, 292, 445
BspT104I	TTCGAA	1 cut(s)	553
BspT107I	GGYRCC	1 cut(s)	1302
BsrFI	RCCGGY	3 cut(s)	131, 711, 1318
BsrI	ACTGG	1 cut(s)	240
BssAI	RCCGGY	3 cut(s)	131, 711, 1318
BssECI	CCNNGG	3 cut(s)	250, 369, 1287
BssMI	GATC	4 cut(s)	114, 309, 497, 1264
BssSI	CACGAG	1 cut(s)	623
BssT1I	CCWWGG	2 cut(s)	250, 369
Bst2BI	CACGAG	1 cut(s)	623
Bst4CI	ACNGT	5 cut(s)	110, 632, 1022, 1160, 1307
Bst6I	CTCTTC	6 cut(s)	145, 150, 263, 292, 445, 892
BstBI	TTCGAA	1 cut(s)	553
BstC8I	GCNNGC	7 cut(s)	304, 533, 713, 717, 935, 1034, 1258
BstDEI	CTNAG	3 cut(s)	543, 880, 938
BstDSI	CCRYGG	2 cut(s)	250, 369
BstF5I	GGATG	4 cut(s)	327, 473, 566, 827
BstFNI	CGCG	2 cut(s)	719, 1088
BstKTI	GATC	4 cut(s)	117, 312, 500, 1267
BstMAI	GTCTC	1 cut(s)	1322
BstMBI	GATC	4 cut(s)	114, 309, 497, 1264
BstMCI	CGRYCG	1 cut(s)	117
BstMWI	GCNNNNNNNGC	9 cut(s)	221, 224, 227, 252, 700, 916, 951, 1033, 1082
BstNSI	RCATGY	2 cut(s)	535, 755
BstSCI	CCNGG	4 cut(s)	270, 703, 1060, 1286
BstSFI	CTRYAG	1 cut(s)	526
BstUI	CGCG	2 cut(s)	719, 1088
BstV1I	GCAGC	9 cut(s)	202, 205, 208, 211, 214, 440, 703, 879, 963
BstV2I	GAAGAC	4 cut(s)	273, 620, 647, 1046
BsuI	GTATCC	1 cut(s)	1273
BsuRI	GGCC	4 cut(s)	246, 255, 541, 711
BtgI	CCRYGG	2 cut(s)	250, 369
BtsCI	GGATG	4 cut(s)	327, 473, 566, 827
BtsI	GCAGTG	1 cut(s)	23
BtsIMutI	CAGTG	3 cut(s)	23, 247, 987
BtuMI	TCGCGA	1 cut(s)	719
Cac8I	GCNNGC	7 cut(s)	304, 533, 713, 717, 935, 1034, 1258
Cfr10I	RCCGGY	3 cut(s)	131, 711, 1318
CseI	GACGC	1 cut(s)	1250
Csp6I	GTAC	2 cut(s)	493, 1303
CspAI	ACCGGT	1 cut(s)	131
CviAII	CATG	9 cut(s)	251, 278, 370, 490, 522, 532, 752, 1029, 1049
CviQI	GTAC	2 cut(s)	493, 1303
DdeI	CTNAG	3 cut(s)	543, 880, 938
DpnI	GATC	4 cut(s)	116, 311, 499, 1266
DpnII	GATC	4 cut(s)	114, 309, 497, 1264
DrdI	GACNNNNNNGTC	1 cut(s)	343
DseDI	GACNNNNNNGTC	1 cut(s)	343
EaeI	YGGCCR	2 cut(s)	244, 709
Eam1104I	CTCTTC	6 cut(s)	145, 150, 263, 292, 445, 892
EarI	CTCTTC	6 cut(s)	145, 150, 263, 292, 445, 892
EciI	GGCGGA	2 cut(s)	389, 1091
Ecl136II	GAGCTC	1 cut(s)	432
Eco130I	CCWWGG	2 cut(s)	250, 369
Eco147I	AGGCCT	1 cut(s)	541
Eco24I	GRGCYC	1 cut(s)	434
Eco32I	GATATC	1 cut(s)	16
Eco53kI	GAGCTC	1 cut(s)	432
Eco88I	CYCGRG	2 cut(s)	448, 862
EcoICRI	GAGCTC	1 cut(s)	432
EcoRI	GAATTC	1 cut(s)	424
EcoRV	GATATC	1 cut(s)	16
EcoT14I	CCWWGG	2 cut(s)	250, 369
EcoT38I	GRGCYC	1 cut(s)	434
ErhI	CCWWGG	2 cut(s)	250, 369
FaeI	CATG	9 cut(s)	254, 281, 373, 493, 525, 535, 755, 1032, 1052
FatI	CATG	9 cut(s)	250, 277, 369, 489, 521, 531, 751, 1028, 1048
FauI	CCCGC	1 cut(s)	1025
FokI	GGATG	4 cut(s)	334, 460, 553, 814
FriOI	GRGCYC	1 cut(s)	434
FspBI	CTAG	1 cut(s)	1182
GsuI	CTGGAG	1 cut(s)	418
HaeIII	GGCC	4 cut(s)	246, 255, 541, 711
HapII	CCGG	7 cut(s)	132, 271, 704, 712, 1061, 1287, 1319
HgaI	GACGC	1 cut(s)	1250
Hin1II	CATG	9 cut(s)	254, 281, 373, 493, 525, 535, 755, 1032, 1052
HinfI	GANTC	4 cut(s)	446, 479, 485, 1042
HpaII	CCGG	7 cut(s)	132, 271, 704, 712, 1061, 1287, 1319
HphI	GGTGA	3 cut(s)	146, 590, 697
Hpy166II	GTNNAC	1 cut(s)	1012
Hpy188I	TCNGA	8 cut(s)	296, 445, 478, 484, 571, 1164, 1212, 1264
Hpy188III	TCNNGA	4 cut(s)	147, 718, 840, 927
Hpy8I	GTNNAC	1 cut(s)	1012
Hpy99I	CGWCG	7 cut(s)	122, 363, 517, 520, 1151, 1154, 1164
HpyAV	CCTTC	3 cut(s)	131, 568, 676
HpyCH4III	ACNGT	5 cut(s)	110, 632, 1022, 1160, 1307
HpyCH4V	TGCA	5 cut(s)	28, 535, 746, 1048, 1256
HpyF10VI	GCNNNNNNNGC	9 cut(s)	221, 224, 227, 252, 700, 916, 951, 1033, 1082
HpyF3I	CTNAG	3 cut(s)	543, 880, 938
Hsp92II	CATG	9 cut(s)	254, 281, 373, 493, 525, 535, 755, 1032, 1052
KpnI	GGTACC	1 cut(s)	1306
KroI	GCCGGC	1 cut(s)	711
KroNI	GCCGGC	1 cut(s)	713
Kzo9I	GATC	4 cut(s)	114, 309, 497, 1264
LguI	GCTCTTC	3 cut(s)	150, 292, 445
LmnI	GCTCC	1 cut(s)	437
Lsp1109I	GCAGC	9 cut(s)	202, 205, 208, 211, 214, 440, 703, 879, 963
LweI	GCATC	1 cut(s)	954
MaeI	CTAG	1 cut(s)	1182
MalI	GATC	4 cut(s)	116, 311, 499, 1266
MboI	GATC	4 cut(s)	114, 309, 497, 1264
MfeI	CAATTG	1 cut(s)	1101
MhlI	GDGCHC	2 cut(s)	209, 434
MlyI	GAGTC	4 cut(s)	440, 488, 494, 1036
MmeI	TCCRAC	3 cut(s)	1121, 1142, 1257
MroNI	GCCGGC	1 cut(s)	711
MseI	TTAA	2 cut(s)	741, 1067
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	7 cut(s)	132, 271, 704, 712, 1061, 1287, 1319
MspR9I	CCNGG	4 cut(s)	272, 705, 1062, 1288
MunI	CAATTG	1 cut(s)	1101
Mva1269I	GAATGC	1 cut(s)	853
MvnI	CGCG	2 cut(s)	719, 1088
MwoI	GCNNNNNNNGC	9 cut(s)	221, 224, 227, 252, 700, 916, 951, 1033, 1082
NaeI	GCCGGC	1 cut(s)	713
NciI	CCSGG	4 cut(s)	272, 705, 1062, 1288
NcoI	CCATGG	2 cut(s)	250, 369
NdeII	GATC	4 cut(s)	114, 309, 497, 1264
NgoMIV	GCCGGC	1 cut(s)	711
NlaIII	CATG	9 cut(s)	254, 281, 373, 493, 525, 535, 755, 1032, 1052
NlaIV	GGNNCC	1 cut(s)	1304
NruI	TCGCGA	1 cut(s)	719
NspI	RCATGY	2 cut(s)	535, 755
NspV	TTCGAA	1 cut(s)	553
PaeI	GCATGC	1 cut(s)	535
PaeR7I	CTCGAG	2 cut(s)	448, 862
PceI	AGGCCT	1 cut(s)	541
PciSI	GCTCTTC	3 cut(s)	150, 292, 445
PcsI	WCGNNNNNNNCGW	4 cut(s)	52, 392, 512, 923
PctI	GAATGC	1 cut(s)	853
PdiI	GCCGGC	1 cut(s)	713
PinAI	ACCGGT	1 cut(s)	131
Ple19I	CGATCG	1 cut(s)	117
PleI	GAGTC	4 cut(s)	440, 487, 493, 1036
PpsI	GAGTC	4 cut(s)	440, 487, 493, 1036
Psp124BI	GAGCTC	1 cut(s)	434
PspN4I	GGNNCC	1 cut(s)	1304
PspXI	VCTCGAGB	2 cut(s)	448, 862
PvuI	CGATCG	1 cut(s)	117
RruI	TCGCGA	1 cut(s)	719
RsaI	GTAC	2 cut(s)	494, 1304
RsaNI	GTAC	2 cut(s)	493, 1303
SacI	GAGCTC	1 cut(s)	434
SapI	GCTCTTC	3 cut(s)	150, 292, 445
SaqAI	TTAA	2 cut(s)	741, 1067
Sau3AI	GATC	4 cut(s)	114, 309, 497, 1264
SchI	GAGTC	4 cut(s)	440, 488, 494, 1036
ScrFI	CCNGG	4 cut(s)	272, 705, 1062, 1288
SduI	GDGCHC	2 cut(s)	209, 434
SfaNI	GCATC	1 cut(s)	954
SfcI	CTRYAG	1 cut(s)	526
SfiI	GGCCNNNNNGGCC	1 cut(s)	252
Sfr274I	CTCGAG	2 cut(s)	448, 862
SfuI	TTCGAA	1 cut(s)	553
SgrAI	CRCCGGYG	1 cut(s)	131
SlaI	CTCGAG	2 cut(s)	448, 862
SmlI	CTYRAG	2 cut(s)	448, 862
SmoI	CTYRAG	2 cut(s)	448, 862
SphI	GCATGC	1 cut(s)	535
SseBI	AGGCCT	1 cut(s)	541
SsiI	CCGC	9 cut(s)	213, 247, 374, 456, 815, 1032, 1073, 1076, 1086
SspMI	CTAG	1 cut(s)	1182
SstI	GAGCTC	1 cut(s)	434
StuI	AGGCCT	1 cut(s)	541
StyD4I	CCNGG	4 cut(s)	270, 703, 1060, 1286
StyI	CCWWGG	2 cut(s)	250, 369
TaaI	ACNGT	5 cut(s)	110, 632, 1022, 1160, 1307
TauI	GCSGC	3 cut(s)	249, 1076, 1088
Tru1I	TTAA	2 cut(s)	741, 1067
Tru9I	TTAA	2 cut(s)	741, 1067
TscAI	CASTG	3 cut(s)	30, 247, 987
TseI	GCWGC	9 cut(s)	215, 218, 221, 224, 227, 453, 691, 867, 951
TspDTI	ATGAA	4 cut(s)	294, 462, 555, 1065
TspGWI	ACGGA	1 cut(s)	510
TspRI	CASTG	3 cut(s)	30, 247, 987
XapI	RAATTY	2 cut(s)	364, 424
XceI	RCATGY	2 cut(s)	535, 755
XhoI	CTCGAG	2 cut(s)	448, 862
XspI	CTAG	1 cut(s)	1182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.