MD09G1185600.v1.1

Protein BIG GRAIN 1-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
16069085 .. 16070479
1395 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1185600.v1.1.491

Sequence Viewer

Length: 1395 bp
ATGGAGAGGTGGGATATCAAATCACTCCCAAAAAACCGAGAAGCCAGCTCCAACCGACAGAGCAGAAACCGAGAAGCCAGCTCCCACCGACAGAGCAGAGACAACCCATCTTTCTCCTCCTCCCTCCTCGACTCTATTTACCGTTCCATCGACGAGACCACCGCCGGCAGCGAAGGAGTAGCTTCGAGGAGCGAACAACACCACCGCCTCATCTTCTACAAAGAAACCATGAAGAAAAAACAGAGCACCGCCGCCGCCGTCACTACCAGCGGCCGACATGGCCATGCACGCTCTAAAGAAGACCAGCAGCACGAAATCATGAATTTCCGACGAGCCTGCTTGGTGGAGAAGTGGATGGAGAAGGAGGCTGAGAAGTCCGTACCTGTTCGACGAAATTCCATTACGGATTTCGAGACGAAAAAGTCGAGATACAGTCACCAGAACGAGTTCCTGACGAATTCTAGTTCCAGTTCTTCGGATTCGAGTGGTGGGTTTTCTTCCTCGGAGTCAGACTCCATGTACGGATCAAAGTCGAGGTCCTCATCGTCATGCTACAGCATGCACAGGCCGAAGCCAATTCGAACCAGCATTTCGTCTGAAAAGGTTCTGTTTGATGATCACCAGAGAAATCACCATCACAATTCACAGAAGAAGAAGCACGAGAATGGCTTCATGAAGACGAAATCGAAAGCGCTGAAGATTTACGGCGATTTGAAGAAGGTGAAGCAGCCGATTTCGCCAGGTGGTCGGCTGGCCAGTTTTCTCAACTCTCTGTTCAATGCAGGGCACGTGAAGAAGTCCAAAATTGATGATTTGGGTGCGGAGAGAAAATCGTCATCAAAGTCTGGACAAATGGGGTACTCAAACCCCAGTAGTACTTGTTCGTCAGCCTCTTCGTTTTCGAGGTCTTGCTTGAGAAAAGCGCCTCTTTCGAGAAGCGAGTTGAGTGGCATCAGCAGCAATGTTGATGCCGCGAAGAGGTCAGTGAGGTTTTGTCCTGTGAGTGTGATTGTGGATGAGGATTGCCGCCCGTGCGGACAAAAGACTCTGCTTAAAGAGGAGTCGGATTTAATGGCCGTGGCTAGAGCTGCTGCGGCCATTAAACCTCCAACAAATGAAGATGTTGGAGTTGAGTGTTGTGTGATGGATGTTGATGAGGATGATGATCATCGACGTCGAATTGAGGAAGTTGCGAGAGATTACTTGATGAAGAATTATCAGAAGAAGCATGACGAAGATGATGAGGATGATGATGATGCAGAGAGCTATGCAAGTTCTGATCTCTTTGAGTTGGATACTGCTGGGGTTGAAGAAAGGTATCGTGAAGAACTGCCTGTGTATGAGACTACCTTTTTCGACAGAAATCGAGCCATTGCTAACGGTTTGATTTTGTAA

Protein Analysis

465

Amino Acids

52.26

Weight (kDa)

8.55

Isoelectric Point (pI)

63.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013871)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54200 AT3G13980
fragaria_vesca FvH4_6g34500
malus_domestica MD09G1185600.v1.1 MD17G1170300.v1.1
prunus_persica Prupe.3G043400_v2.0.a1
pyrus_communis pycom09g10290 pycom12419g00180
rosa_chinensis RchiOBHm_Chr2g0144811
rosa_laevigata RLG00000020115
rosa_multiflora Rmu_sc0002354.1_g000024
rosa_roxburghii Rroxscaffold_2G00100950
rosa_rugosa Rorug02G0390000
rosa_samantha Rh2AG441700 Rh2BG452300 Rh2DG462100
rosa_wichuraiana Rw2G036120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 421
AatII GACGTC 1 cut(s) 1177
AccII CGCG 1 cut(s) 974
AclWI GGATC 1 cut(s) 532
AcoI YGGCCR 5 cut(s) 271, 280, 753, 1074, 1095
AcsI RAATTY 3 cut(s) 322, 394, 457
AcuI CTGAAG 1 cut(s) 716
AcvI CACGTG 1 cut(s) 790
AcyI GRCGYC 1 cut(s) 1174
AfaI GTAC 4 cut(s) 381, 521, 860, 877
AfeI AGCGCT 1 cut(s) 693
AfiI CCNNNNNNNGG 1 cut(s) 978
AgsI TTSAA 3 cut(s) 715, 778, 1310
AjnI CCWGG 1 cut(s) 739
AluBI AGCT 5 cut(s) 48, 81, 182, 1088, 1266
AluI AGCT 5 cut(s) 48, 81, 182, 1088, 1266
Alw21I GWGCWC 1 cut(s) 248
Alw26I GTCTC 4 cut(s) 93, 149, 407, 1337
AlwI GGATC 1 cut(s) 532
Aor51HI AGCGCT 1 cut(s) 693
AoxI GGCC 6 cut(s) 271, 280, 566, 753, 1074, 1095
ApeKI GCWGC 6 cut(s) 168, 307, 727, 957, 1088, 1091
ApoI RAATTY 3 cut(s) 322, 394, 457
ArsI GACNNNNNNTTYG 2 cut(s) 521, 553
Asp700I GAANNNNTTC 3 cut(s) 446, 603, 668
AspLEI GCGC 2 cut(s) 694, 925
AspS9I GGNCC 1 cut(s) 537
AsuHPI GGTGA 4 cut(s) 428, 611, 623, 733
AsuII TTCGAA 1 cut(s) 580
AvaII GGWCC 1 cut(s) 537
BaeGI GKGCMC 1 cut(s) 789
BalI TGGCCA 2 cut(s) 282, 755
BauI CACGAG 1 cut(s) 659
BbrPI CACGTG 1 cut(s) 790
BbsI GAAGAC 2 cut(s) 306, 683
Bbv12I GWGCWC 1 cut(s) 248
BbvI GCAGC 6 cut(s) 180, 319, 739, 969, 1075, 1078
BccI CCATC 5 cut(s) 115, 155, 349, 642, 1138
BceAI ACGGC 3 cut(s) 242, 721, 1061
BcgI CGANNNNNNTGC 2 cut(s) 318, 352
BciT130I CCWGG 1 cut(s) 741
BciVI GTATCC 1 cut(s) 1288
BclI TGATCA 2 cut(s) 616, 1165
BcoDI GTCTC 4 cut(s) 93, 149, 407, 1337
BfaI CTAG 2 cut(s) 462, 1083
BfmI CTRYAG 1 cut(s) 553
BfoI RGCGCY 2 cut(s) 695, 926
BfuI GTATCC 1 cut(s) 1288
BglI GCCNNNNNGGC 1 cut(s) 279
BmcAI AGTACT 1 cut(s) 877
Bme1390I CCNGG 1 cut(s) 741
Bme18I GGWCC 1 cut(s) 537
BmgT120I GGNCC 1 cut(s) 537
BmrFI CCNGG 1 cut(s) 741
BmrI ACTGGG 1 cut(s) 864
BmsI GCATC 3 cut(s) 958, 960, 1246
BmuI ACTGGG 1 cut(s) 864
BpiI GAAGAC 2 cut(s) 306, 683
BplI GAGNNNNNCTC 2 cut(s) 497, 529
Bpu14I TTCGAA 1 cut(s) 580
BpuEI CTTGAG 1 cut(s) 934
BsaAI YACGTR 1 cut(s) 790
BsaBI GATNNNNATC 2 cut(s) 1164, 1167
BsaHI GRCGYC 1 cut(s) 1174
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 501, 1077
Bsc4I CCNNNNNNNGG 1 cut(s) 978
Bse118I RCCGGY 1 cut(s) 164
Bse1I ACTGG 3 cut(s) 468, 756, 870
Bse3DI GCAATG 2 cut(s) 967, 1371
Bse8I GATNNNNATC 2 cut(s) 1164, 1167
BseBI CCWGG 1 cut(s) 741
BseDI CCNNGG 2 cut(s) 501, 1077
BseGI GGATG 5 cut(s) 360, 1021, 1153, 1165, 1252
BseJI GATNNNNATC 2 cut(s) 1164, 1167
BseLI CCNNNNNNNGG 1 cut(s) 978
BseMI GCAATG 2 cut(s) 967, 1371
BseMII CTCAG 1 cut(s) 360
BseNI ACTGG 3 cut(s) 468, 756, 870
BseRI GAGGAG 5 cut(s) 106, 109, 116, 202, 1073
BseSI GKGCMC 1 cut(s) 789
BseX3I CGGCCG 1 cut(s) 271
BseXI GCAGC 6 cut(s) 180, 319, 739, 969, 1075, 1078
BseYI CCCAGC 1 cut(s) 1301
Bsh1236I CGCG 1 cut(s) 974
Bsh1285I CGRYCG 1 cut(s) 274
BshFI GGCC 6 cut(s) 273, 282, 568, 755, 1076, 1097
BsiEI CGRYCG 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 248
BsiSI CCGG 1 cut(s) 165
BslI CCNNNNNNNGG 1 cut(s) 978
BsmAI GTCTC 4 cut(s) 93, 149, 407, 1337
BsmBI CGTCTC 1 cut(s) 407
BsnI GGCC 6 cut(s) 273, 282, 568, 755, 1076, 1097
Bso31I GGTCTC 1 cut(s) 149
Bsp119I TTCGAA 1 cut(s) 580
Bsp1286I GDGCHC 2 cut(s) 248, 789
Bsp143I GATC 4 cut(s) 524, 616, 1165, 1279
BspANI GGCC 6 cut(s) 273, 282, 568, 755, 1076, 1097
BspCNI CTCAG 1 cut(s) 361
BspFNI CGCG 1 cut(s) 974
BspHI TCATGA 2 cut(s) 318, 672
BspPI GGATC 1 cut(s) 532
BspT104I TTCGAA 1 cut(s) 580
BspTNI GGTCTC 1 cut(s) 149
BsrDI GCAATG 2 cut(s) 967, 1371
BsrFI RCCGGY 1 cut(s) 164
BsrI ACTGG 3 cut(s) 468, 756, 870
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 2 cut(s) 501, 1077
BssMI GATC 4 cut(s) 524, 616, 1165, 1279
BssNI GRCGYC 1 cut(s) 1174
BssSI CACGAG 1 cut(s) 659
Bst2BI CACGAG 1 cut(s) 659
Bst2UI CCWGG 1 cut(s) 741
Bst4CI ACNGT 3 cut(s) 143, 434, 1382
Bst6I CTCTTC 2 cut(s) 898, 971
BstACI GRCGYC 1 cut(s) 1174
BstBAI YACGTR 1 cut(s) 790
BstBI TTCGAA 1 cut(s) 580
BstC8I GCNNGC 7 cut(s) 46, 79, 166, 289, 337, 560, 753
BstDEI CTNAG 1 cut(s) 369
BstDSI CCRYGG 1 cut(s) 1077
BstF5I GGATG 5 cut(s) 360, 1021, 1153, 1165, 1252
BstFNI CGCG 1 cut(s) 974
BstH2I RGCGCY 2 cut(s) 695, 926
BstHHI GCGC 2 cut(s) 694, 925
BstKTI GATC 4 cut(s) 527, 619, 1168, 1282
BstMAI GTCTC 4 cut(s) 93, 149, 407, 1337
BstMBI GATC 4 cut(s) 524, 616, 1165, 1279
BstMCI CGRYCG 1 cut(s) 274
BstMWI GCNNNNNNNGC 7 cut(s) 279, 288, 736, 957, 1032, 1088, 1094
BstNI CCWGG 1 cut(s) 741
BstNSI RCATGY 1 cut(s) 562
BstSCI CCNGG 1 cut(s) 739
BstSFI CTRYAG 1 cut(s) 553
BstSLI GKGCMC 1 cut(s) 789
BstUI CGCG 1 cut(s) 974
BstV1I GCAGC 6 cut(s) 180, 319, 739, 969, 1075, 1078
BstV2I GAAGAC 2 cut(s) 306, 683
BstZI CGGCCG 1 cut(s) 271
BsuI GTATCC 1 cut(s) 1288
BsuRI GGCC 6 cut(s) 273, 282, 568, 755, 1076, 1097
BtgI CCRYGG 1 cut(s) 1077
BtsCI GGATG 5 cut(s) 360, 1021, 1153, 1165, 1252
BtsIMutI CAGTG 1 cut(s) 990
Cac8I GCNNGC 7 cut(s) 46, 79, 166, 289, 337, 560, 753
CciI TCATGA 2 cut(s) 318, 672
CfoI GCGC 2 cut(s) 694, 925
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 1 cut(s) 537
Csp6I GTAC 4 cut(s) 380, 520, 859, 876
CviAII CATG 9 cut(s) 229, 278, 284, 319, 517, 549, 559, 673, 1229
CviQI GTAC 4 cut(s) 380, 520, 859, 876
DdeI CTNAG 1 cut(s) 369
DpnI GATC 4 cut(s) 526, 618, 1167, 1281
DpnII GATC 4 cut(s) 524, 616, 1165, 1279
DrdI GACNNNNNNGTC 1 cut(s) 421
DseDI GACNNNNNNGTC 1 cut(s) 421
EaeI YGGCCR 5 cut(s) 271, 280, 753, 1074, 1095
EagI CGGCCG 1 cut(s) 271
Eam1104I CTCTTC 2 cut(s) 898, 971
EarI CTCTTC 2 cut(s) 898, 971
EclXI CGGCCG 1 cut(s) 271
Eco31I GGTCTC 1 cut(s) 149
Eco32I GATATC 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 537
Eco47III AGCGCT 1 cut(s) 693
Eco52I CGGCCG 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 716
Eco72I CACGTG 1 cut(s) 790
EcoO109I RGGNCCY 1 cut(s) 537
EcoRI GAATTC 1 cut(s) 457
EcoRII CCWGG 1 cut(s) 739
EcoRV GATATC 1 cut(s) 16
Esp3I CGTCTC 1 cut(s) 407
FaeI CATG 9 cut(s) 232, 281, 287, 322, 520, 552, 562, 676, 1232
FalI AAGNNNNNCTT 2 cut(s) 912, 944
FatI CATG 9 cut(s) 228, 277, 283, 318, 516, 548, 558, 672, 1228
FbaI TGATCA 2 cut(s) 616, 1165
FokI GGATG 5 cut(s) 367, 1028, 1160, 1172, 1259
FspBI CTAG 2 cut(s) 462, 1083
GlaI GCGC 2 cut(s) 693, 924
GsaI CCCAGC 1 cut(s) 1305
HaeII RGCGCY 2 cut(s) 695, 926
HaeIII GGCC 6 cut(s) 273, 282, 568, 755, 1076, 1097
HapII CCGG 1 cut(s) 165
HhaI GCGC 2 cut(s) 694, 925
Hin1I GRCGYC 1 cut(s) 1174
Hin1II CATG 9 cut(s) 232, 281, 287, 322, 520, 552, 562, 676, 1232
Hin6I GCGC 2 cut(s) 692, 923
HinP1I GCGC 2 cut(s) 692, 923
HinfI GANTC 6 cut(s) 131, 479, 506, 512, 1045, 1061
HpaII CCGG 1 cut(s) 165
HphI GGTGA 4 cut(s) 428, 611, 623, 733
Hpy188I TCNGA 8 cut(s) 329, 478, 505, 511, 598, 1066, 1221, 1279
Hpy188III TCNNGA 8 cut(s) 319, 412, 426, 451, 673, 846, 933, 1322
Hpy99I CGWCG 5 cut(s) 155, 333, 393, 1176, 1179
HpyAV CCTTC 3 cut(s) 167, 355, 712
HpyCH4III ACNGT 3 cut(s) 143, 434, 1382
HpyCH4IV ACGT 2 cut(s) 789, 1174
HpyCH4V TGCA 5 cut(s) 287, 562, 782, 1259, 1271
HpyF10VI GCNNNNNNNGC 7 cut(s) 279, 288, 736, 957, 1032, 1088, 1094
HpyF3I CTNAG 1 cut(s) 369
HpySE526I ACGT 2 cut(s) 789, 1174
Hsp92I GRCGYC 1 cut(s) 1174
Hsp92II CATG 9 cut(s) 232, 281, 287, 322, 520, 552, 562, 676, 1232
HspAI GCGC 2 cut(s) 692, 923
KroI GCCGGC 1 cut(s) 164
KroNI GCCGGC 1 cut(s) 166
Ksp22I TGATCA 2 cut(s) 616, 1165
Kzo9I GATC 4 cut(s) 524, 616, 1165, 1279
LmnI GCTCC 3 cut(s) 53, 86, 189
Lsp1109I GCAGC 6 cut(s) 180, 319, 739, 969, 1075, 1078
LweI GCATC 3 cut(s) 958, 960, 1246
MaeI CTAG 2 cut(s) 462, 1083
MaeII ACGT 2 cut(s) 789, 1174
MaeIII GTNAC 2 cut(s) 259, 434
MalI GATC 4 cut(s) 526, 618, 1167, 1281
MboI GATC 4 cut(s) 524, 616, 1165, 1279
MhlI GDGCHC 2 cut(s) 248, 789
MlsI TGGCCA 2 cut(s) 282, 755
MluCI AATT 8 cut(s) 322, 394, 457, 576, 640, 804, 1179, 1213
MluNI TGGCCA 2 cut(s) 282, 755
MlyI GAGTC 5 cut(s) 125, 506, 515, 1039, 1070
MmeI TCCRAC 6 cut(s) 75, 352, 1044, 1105, 1133, 1272
Mox20I TGGCCA 2 cut(s) 282, 755
MroNI GCCGGC 1 cut(s) 164
MroXI GAANNNNTTC 3 cut(s) 446, 603, 668
MscI TGGCCA 2 cut(s) 282, 755
MseI TTAA 3 cut(s) 1053, 1070, 1101
MslI CAYNNNNRTG 3 cut(s) 282, 547, 663
Msp20I TGGCCA 2 cut(s) 282, 755
MspA1I CMGCKG 1 cut(s) 270
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 741
MvaI CCWGG 1 cut(s) 741
MvnI CGCG 1 cut(s) 974
MwoI GCNNNNNNNGC 7 cut(s) 279, 288, 736, 957, 1032, 1088, 1094
NaeI GCCGGC 1 cut(s) 166
NdeII GATC 4 cut(s) 524, 616, 1165, 1279
NgoMIV GCCGGC 1 cut(s) 164
NlaIII CATG 9 cut(s) 232, 281, 287, 322, 520, 552, 562, 676, 1232
NmuCI GTSAC 2 cut(s) 259, 434
NspI RCATGY 1 cut(s) 562
NspV TTCGAA 1 cut(s) 580
PaeI GCATGC 1 cut(s) 562
PagI TCATGA 2 cut(s) 318, 672
PcsI WCGNNNNNNNCGW 1 cut(s) 422
PdiI GCCGGC 1 cut(s) 166
PdmI GAANNNNTTC 3 cut(s) 446, 603, 668
PfeI GAWTC 1 cut(s) 479
PleI GAGTC 5 cut(s) 125, 506, 514, 1039, 1069
PmaCI CACGTG 1 cut(s) 790
PmlI CACGTG 1 cut(s) 790
PpsI GAGTC 5 cut(s) 125, 506, 514, 1039, 1069
Ppu21I YACGTR 1 cut(s) 790
PpuMI RGGWCCY 1 cut(s) 537
Psp5II RGGWCCY 1 cut(s) 537
Psp6I CCWGG 1 cut(s) 739
PspCI CACGTG 1 cut(s) 790
PspFI CCCAGC 1 cut(s) 1301
PspGI CCWGG 1 cut(s) 739
PspPI GGNCC 1 cut(s) 537
PspPPI RGGWCCY 1 cut(s) 537
PsrI GAACNNNNNNTAC 2 cut(s) 865, 897
RsaI GTAC 4 cut(s) 381, 521, 860, 877
RsaNI GTAC 4 cut(s) 380, 520, 859, 876
RseI CAYNNNNRTG 3 cut(s) 282, 547, 663
SaqAI TTAA 3 cut(s) 1053, 1070, 1101
Sau3AI GATC 4 cut(s) 524, 616, 1165, 1279
Sau96I GGNCC 1 cut(s) 537
ScaI AGTACT 1 cut(s) 877
SchI GAGTC 5 cut(s) 125, 506, 515, 1039, 1070
ScrFI CCNGG 1 cut(s) 741
SduI GDGCHC 2 cut(s) 248, 789
SfaNI GCATC 3 cut(s) 958, 960, 1246
SfcI CTRYAG 1 cut(s) 553
SfiI GGCCNNNNNGGCC 1 cut(s) 279
SfuI TTCGAA 1 cut(s) 580
SinI GGWCC 1 cut(s) 537
SmiMI CAYNNNNRTG 3 cut(s) 282, 547, 663
SmlI CTYRAG 1 cut(s) 913
SmoI CTYRAG 1 cut(s) 913
SphI GCATGC 1 cut(s) 562
Sse9I AATT 8 cut(s) 322, 394, 457, 576, 640, 804, 1179, 1213
SspMI CTAG 2 cut(s) 462, 1083
StyD4I CCNGG 1 cut(s) 739
TaaI ACNGT 3 cut(s) 143, 434, 1382
TaiI ACGT 2 cut(s) 792, 1177
TasI AATT 8 cut(s) 322, 394, 457, 576, 640, 804, 1179, 1213
TatI WGTACW 1 cut(s) 875
TauI GCSGC 6 cut(s) 254, 257, 273, 974, 1029, 1097
TfiI GAWTC 1 cut(s) 479
Tru1I TTAA 3 cut(s) 1053, 1070, 1101
Tru9I TTAA 3 cut(s) 1053, 1070, 1101
TscAI CASTG 1 cut(s) 990
TseFI GTSAC 2 cut(s) 259, 434
TseI GCWGC 6 cut(s) 168, 307, 727, 957, 1088, 1091
Tsp45I GTSAC 2 cut(s) 259, 434
TspDTI ATGAA 6 cut(s) 245, 335, 661, 689, 1131, 1223
TspGWI ACGGA 3 cut(s) 367, 419, 537
TspRI CASTG 1 cut(s) 990
VpaK11BI GGWCC 1 cut(s) 537
XapI RAATTY 3 cut(s) 322, 394, 457
XceI RCATGY 1 cut(s) 562
XmnI GAANNNNTTC 3 cut(s) 446, 603, 668
XspI CTAG 2 cut(s) 462, 1083
ZraI GACGTC 1 cut(s) 1175
ZrmI AGTACT 1 cut(s) 877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.