RLG00000020115

Protein BIG GRAIN 1-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
61145545 .. 61146729
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020115

Sequence Viewer

Length: 1185 bp
ATGGAGAGGTGGGATCACAAATCACAACGAGAAGCTCGACACAGTAAACACCGTAGAGAAAACCCTTCTTTCTCTTCGTCTCTGCTGGACTCTATTTACCGCTCAATCGACGAAGGCGAACAGATTGGAGCTCGGAGAGAAGGAGAGCTCATATTTTACAAGGAATCCATGAGGAAGAAACAGAGCGGTAGTGTTTCTTCTAATGGCTATGGCGTCAAAGCAGAGGAGGAGAACATGAGTCTCCAGCGAGCCTGCTTGATAGAGAAATGGATGGAGAAGAAAGCTGCGGGGGCTGACAAAGTCGTGGTTCGAAGAAATTCAATGGCGGATTTCGACAGGAGGTTCTTGAATTCGAGCTCCAGCTCTTCGGATTCGAGCTGCGGAGGTGGGTTTTCTTCGTCGGAGTCAGACTCCATGTACGGGTCAAGATCGAGGTCCTCATCTTCATGCTACAGCATGCCGAGGCCCAAACCCATCCGGACCAGCCTCTCATCGACCCGACCTGAAACCCATCAGAAGCCCAAGCAAGAAAACGGGTTCGTGAAGACGAAATCCAAGGCGTTGAAGATTTACGGCGACTTGAAGAAAGTGAAGCAGCCAATCTCACCGGGTGGAAAACTAGCCAGTTTTCTCAATTCCATTTTCAACAGCGGAAACGGAAAGAAGCACAAGATTAACATCGACGACTTGGGTTCCGACAGGAACTCGAAATCGACAAACGGGTCGAACTGTTCTTCTGCTTCTTCTTTTTCAAGGTCCTGTTTGCGCAAAACTTCTGTTTCTAGAGGTGAATTCAGCAATGGCGGTGGTGACAGTGCGAAAAGGTCAGTGAGGTTTTATCCGGTGAGCGTGATCGTGGACGAGGATTGCCAGCCGTGCGGGCACAAAACTCTTGAAGAGATGAAGAGGAGTTCTGCACTTGACTGTTTTGTTATGGATGAAGATGATCATCGTCGCCAAGTTGAGGAAGTAGCCAGAAGCTACTTGATGAAGAACTACCAGAAGAAGGCTCATGATGAGGAAATGGATGAGGATGAGGACGATGATGCAGCGAGCTATGCGAGTTCTGATCTGTTCGAGTTGGACACTGTTGGAGTTGAAGAAAGGTACCGTGAAGAATTACCGGTGTATGAAACTACGTATCTCGACAGAAATCGAGCCATTGCTAATGGTTTGATTTTGTAA

Protein Analysis

395

Amino Acids

44.25

Weight (kDa)

8.46

Isoelectric Point (pI)

68.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013871)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54200 AT3G13980
fragaria_vesca FvH4_6g34500
malus_domestica MD09G1185600.v1.1 MD17G1170300.v1.1
prunus_persica Prupe.3G043400_v2.0.a1
pyrus_communis pycom09g10290 pycom12419g00180
rosa_chinensis RchiOBHm_Chr2g0144811
rosa_laevigata RLG00000020115
rosa_multiflora Rmu_sc0002354.1_g000024
rosa_roxburghii Rroxscaffold_2G00100950
rosa_rugosa Rorug02G0390000
rosa_samantha Rh2AG441700 Rh2BG452300 Rh2DG462100
rosa_wichuraiana Rw2G036120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 721
Acc16I TGCGCA 1 cut(s) 767
Acc65I GGTACC 1 cut(s) 1107
AccB1I GGYRCC 1 cut(s) 1107
AccBSI CCGCTC 2 cut(s) 102, 186
AccIII TCCGGA 1 cut(s) 477
AciI CCGC 8 cut(s) 100, 186, 287, 326, 381, 651, 804, 879
AclWI GGATC 1 cut(s) 21
AcsI RAATTY 3 cut(s) 316, 349, 791
AcyI GRCGYC 1 cut(s) 213
AdeI CACNNNGTG 1 cut(s) 611
AfaI GTAC 2 cut(s) 419, 1109
AfiI CCNNNNNNNGG 3 cut(s) 420, 964, 1006
AgeI ACCGGT 1 cut(s) 1123
AgsI TTSAA 8 cut(s) 321, 349, 565, 583, 646, 753, 896, 1100
AluBI AGCT 9 cut(s) 35, 131, 148, 284, 357, 363, 378, 981, 1056
AluI AGCT 9 cut(s) 35, 131, 148, 284, 357, 363, 378, 981, 1056
Alw21I GWGCWC 3 cut(s) 133, 150, 359
Alw26I GTCTC 2 cut(s) 84, 245
AlwI GGATC 1 cut(s) 21
Aor13HI TCCGGA 1 cut(s) 477
AoxI GGCC 1 cut(s) 464
ApeKI GCWGC 4 cut(s) 284, 378, 595, 1049
ApoI RAATTY 3 cut(s) 316, 349, 791
AsiGI ACCGGT 1 cut(s) 1123
Asp700I GAANNNNTTC 1 cut(s) 316
Asp718I GGTACC 1 cut(s) 1107
AspLEI GCGC 1 cut(s) 768
AspS9I GGNCC 4 cut(s) 435, 465, 480, 756
AsuC2I CCSGG 1 cut(s) 609
AsuHPI GGTGA 4 cut(s) 597, 800, 821, 856
AsuII TTCGAA 1 cut(s) 310
AvaII GGWCC 3 cut(s) 435, 480, 756
BaeGI GKGCMC 1 cut(s) 885
BanI GGYRCC 1 cut(s) 1107
BanII GRGCYC 3 cut(s) 133, 150, 359
BarI GAAGNNNNNNTAC 2 cut(s) 181, 213
BbsI GAAGAC 1 cut(s) 551
Bbv12I GWGCWC 3 cut(s) 133, 150, 359
BbvI GCAGC 4 cut(s) 271, 365, 607, 1061
BccI CCATC 3 cut(s) 265, 482, 519
BceAI ACGGC 2 cut(s) 589, 859
BclI TGATCA 1 cut(s) 946
BcnI CCSGG 1 cut(s) 609
BcoDI GTCTC 2 cut(s) 84, 245
BfaI CTAG 2 cut(s) 620, 783
BfmI CTRYAG 1 cut(s) 451
BglI GCCNNNNNGGC 1 cut(s) 880
BisI GCNGC 4 cut(s) 285, 379, 596, 1050
BlsI GCNGC 4 cut(s) 286, 380, 597, 1051
Bme1390I CCNGG 1 cut(s) 609
Bme18I GGWCC 3 cut(s) 435, 480, 756
BmgT120I GGNCC 4 cut(s) 435, 465, 480, 756
BmiI GGNNCC 2 cut(s) 694, 1109
BmrFI CCNGG 1 cut(s) 609
BmsI GCATC 1 cut(s) 1036
BpiI GAAGAC 1 cut(s) 551
BplI GAGNNNNNCTC 2 cut(s) 395, 427
BpmI CTGGAG 2 cut(s) 227, 343
Bpu14I TTCGAA 1 cut(s) 310
BpuMI CCSGG 1 cut(s) 609
BsaAI YACGTR 1 cut(s) 1140
BsaBI GATNNNNATC 2 cut(s) 677, 948
BsaHI GRCGYC 1 cut(s) 213
BsaJI CCNNGG 2 cut(s) 461, 555
BsaWI WCCGGW 3 cut(s) 477, 841, 1123
Bsc4I CCNNNNNNNGG 3 cut(s) 420, 964, 1006
Bse118I RCCGGY 1 cut(s) 1123
Bse1I ACTGG 1 cut(s) 624
Bse3DI GCAATG 2 cut(s) 805, 1161
Bse8I GATNNNNATC 2 cut(s) 677, 948
BseAI TCCGGA 1 cut(s) 477
BseDI CCNNGG 2 cut(s) 461, 555
BseGI GGATG 5 cut(s) 276, 474, 943, 1033, 1039
BseJI GATNNNNATC 2 cut(s) 677, 948
BseLI CCNNNNNNNGG 3 cut(s) 420, 964, 1006
BseMI GCAATG 2 cut(s) 805, 1161
BseNI ACTGG 1 cut(s) 624
BseRI GAGGAG 3 cut(s) 239, 242, 922
BseSI GKGCMC 1 cut(s) 885
BseXI GCAGC 4 cut(s) 271, 365, 607, 1061
BsgI GTGCAG 1 cut(s) 900
BshFI GGCC 1 cut(s) 466
BshNI GGYRCC 1 cut(s) 1107
BshTI ACCGGT 1 cut(s) 1123
BsiHKAI GWGCWC 3 cut(s) 133, 150, 359
BsiSI CCGG 4 cut(s) 478, 608, 842, 1124
BslI CCNNNNNNNGG 3 cut(s) 420, 964, 1006
BsmAI GTCTC 2 cut(s) 84, 245
BsmBI CGTCTC 1 cut(s) 84
BsnI GGCC 1 cut(s) 466
Bsp119I TTCGAA 1 cut(s) 310
Bsp1286I GDGCHC 4 cut(s) 133, 150, 359, 885
Bsp13I TCCGGA 1 cut(s) 477
Bsp143I GATC 5 cut(s) 13, 428, 852, 946, 1069
BspACI CCGC 8 cut(s) 100, 186, 287, 326, 381, 651, 804, 879
BspANI GGCC 1 cut(s) 466
BspEI TCCGGA 1 cut(s) 477
BspHI TCATGA 1 cut(s) 1012
BspLI GGNNCC 2 cut(s) 694, 1109
BspPI GGATC 1 cut(s) 21
BspQI GCTCTTC 1 cut(s) 370
BspT104I TTCGAA 1 cut(s) 310
BspT107I GGYRCC 1 cut(s) 1107
BsrBI CCGCTC 2 cut(s) 102, 186
BsrDI GCAATG 2 cut(s) 805, 1161
BsrFI RCCGGY 1 cut(s) 1123
BsrI ACTGG 1 cut(s) 624
BssAI RCCGGY 1 cut(s) 1123
BssECI CCNNGG 2 cut(s) 461, 555
BssMI GATC 5 cut(s) 13, 428, 852, 946, 1069
BssNI GRCGYC 1 cut(s) 213
BssT1I CCWWGG 1 cut(s) 555
Bst4CI ACNGT 7 cut(s) 44, 53, 731, 815, 926, 1090, 1112
Bst6I CTCTTC 4 cut(s) 79, 370, 891, 899
BstACI GRCGYC 1 cut(s) 213
BstBAI YACGTR 1 cut(s) 1140
BstBI TTCGAA 1 cut(s) 310
BstC8I GCNNGC 6 cut(s) 249, 253, 458, 872, 881, 1054
BstF5I GGATG 5 cut(s) 276, 474, 943, 1033, 1039
BstHHI GCGC 1 cut(s) 768
BstKTI GATC 5 cut(s) 16, 431, 855, 949, 1072
BstMAI GTCTC 2 cut(s) 84, 245
BstMBI GATC 5 cut(s) 13, 428, 852, 946, 1069
BstMWI GCNNNNNNNGC 4 cut(s) 290, 876, 880, 1058
BstNSI RCATGY 1 cut(s) 460
BstSCI CCNGG 1 cut(s) 607
BstSFI CTRYAG 1 cut(s) 451
BstSLI GKGCMC 1 cut(s) 885
BstSNI TACGTA 1 cut(s) 1140
BstV1I GCAGC 4 cut(s) 271, 365, 607, 1061
BstV2I GAAGAC 1 cut(s) 551
BsuRI GGCC 1 cut(s) 466
BtsCI GGATG 5 cut(s) 276, 474, 943, 1033, 1039
BtsIMutI CAGTG 3 cut(s) 820, 834, 1086
Cac8I GCNNGC 6 cut(s) 249, 253, 458, 872, 881, 1054
CciI TCATGA 1 cut(s) 1012
CfoI GCGC 1 cut(s) 768
Cfr10I RCCGGY 1 cut(s) 1123
Cfr13I GGNCC 4 cut(s) 435, 465, 480, 756
CseI GACGC 1 cut(s) 202
Csp6I GTAC 2 cut(s) 418, 1108
CspAI ACCGGT 1 cut(s) 1123
CspCI CAANNNNNGTGG 2 cut(s) 787, 822
CviAII CATG 6 cut(s) 169, 235, 415, 447, 457, 1013
CviQI GTAC 2 cut(s) 418, 1108
DpnI GATC 5 cut(s) 15, 430, 854, 948, 1071
DpnII GATC 5 cut(s) 13, 428, 852, 946, 1069
DraIII CACNNNGTG 1 cut(s) 611
DrdI GACNNNNNNGTC 1 cut(s) 721
DseDI GACNNNNNNGTC 1 cut(s) 721
Eam1104I CTCTTC 4 cut(s) 79, 370, 891, 899
EarI CTCTTC 4 cut(s) 79, 370, 891, 899
EciI GGCGGA 1 cut(s) 341
Ecl136II GAGCTC 3 cut(s) 131, 148, 357
Eco105I TACGTA 1 cut(s) 1140
Eco130I CCWWGG 1 cut(s) 555
Eco24I GRGCYC 3 cut(s) 133, 150, 359
Eco47I GGWCC 3 cut(s) 435, 480, 756
Eco53kI GAGCTC 3 cut(s) 131, 148, 357
EcoICRI GAGCTC 3 cut(s) 131, 148, 357
EcoO109I RGGNCCY 2 cut(s) 435, 756
EcoRI GAATTC 2 cut(s) 349, 791
EcoT14I CCWWGG 1 cut(s) 555
EcoT38I GRGCYC 3 cut(s) 133, 150, 359
ErhI CCWWGG 1 cut(s) 555
Esp3I CGTCTC 1 cut(s) 84
FaeI CATG 6 cut(s) 172, 238, 418, 450, 460, 1016
FatI CATG 6 cut(s) 168, 234, 414, 446, 456, 1012
FauI CCCGC 2 cut(s) 280, 872
FbaI TGATCA 1 cut(s) 946
Fnu4HI GCNGC 4 cut(s) 285, 379, 596, 1050
FokI GGATG 5 cut(s) 283, 461, 950, 1040, 1046
FriOI GRGCYC 3 cut(s) 133, 150, 359
Fsp4HI GCNGC 4 cut(s) 285, 379, 596, 1050
FspBI CTAG 2 cut(s) 620, 783
FspI TGCGCA 1 cut(s) 767
GlaI GCGC 1 cut(s) 767
GluI GCNGC 4 cut(s) 285, 379, 596, 1050
GsuI CTGGAG 2 cut(s) 227, 343
HaeIII GGCC 1 cut(s) 466
HapII CCGG 4 cut(s) 478, 608, 842, 1124
HgaI GACGC 1 cut(s) 202
HhaI GCGC 1 cut(s) 768
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 6 cut(s) 172, 238, 418, 450, 460, 1016
Hin6I GCGC 1 cut(s) 766
HinP1I GCGC 1 cut(s) 766
HinfI GANTC 6 cut(s) 89, 164, 238, 371, 404, 410
HpaII CCGG 4 cut(s) 478, 608, 842, 1124
HphI GGTGA 4 cut(s) 597, 800, 821, 856
Hpy166II GTNNAC 2 cut(s) 47, 859
Hpy188I TCNGA 7 cut(s) 135, 370, 403, 409, 516, 697, 1069
Hpy188III TCNNGA 8 cut(s) 346, 426, 478, 541, 783, 893, 1013, 1145
Hpy8I GTNNAC 2 cut(s) 47, 859
Hpy99I CGWCG 4 cut(s) 113, 403, 686, 957
HpyAV CCTTC 4 cut(s) 75, 107, 134, 1000
HpyCH4III ACNGT 7 cut(s) 44, 53, 731, 815, 926, 1090, 1112
HpyCH4IV ACGT 1 cut(s) 1139
HpyCH4V TGCA 2 cut(s) 917, 1049
HpyF10VI GCNNNNNNNGC 4 cut(s) 290, 876, 880, 1058
HpySE526I ACGT 1 cut(s) 1139
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 6 cut(s) 172, 238, 418, 450, 460, 1016
HspAI GCGC 1 cut(s) 766
Kpn2I TCCGGA 1 cut(s) 477
KpnI GGTACC 1 cut(s) 1111
Ksp22I TGATCA 1 cut(s) 946
Kzo9I GATC 5 cut(s) 13, 428, 852, 946, 1069
LguI GCTCTTC 1 cut(s) 370
LmnI GCTCC 2 cut(s) 128, 362
Lsp1109I GCAGC 4 cut(s) 271, 365, 607, 1061
LweI GCATC 1 cut(s) 1036
MaeI CTAG 2 cut(s) 620, 783
MaeII ACGT 1 cut(s) 1139
MaeIII GTNAC 1 cut(s) 809
MalI GATC 5 cut(s) 15, 430, 854, 948, 1071
MbiI CCGCTC 2 cut(s) 102, 186
MboI GATC 5 cut(s) 13, 428, 852, 946, 1069
MhlI GDGCHC 4 cut(s) 133, 150, 359, 885
MluCI AATT 5 cut(s) 316, 349, 634, 791, 1118
MlyI GAGTC 4 cut(s) 83, 247, 404, 413
MmeI TCCRAC 4 cut(s) 381, 720, 1062, 1072
MroI TCCGGA 1 cut(s) 477
MroXI GAANNNNTTC 1 cut(s) 316
MseI TTAA 1 cut(s) 675
MslI CAYNNNNRTG 1 cut(s) 445
MspA1I CMGCKG 1 cut(s) 651
MspI CCGG 4 cut(s) 478, 608, 842, 1124
MspR9I CCNGG 1 cut(s) 609
MwoI GCNNNNNNNGC 4 cut(s) 290, 876, 880, 1058
NciI CCSGG 1 cut(s) 609
NdeII GATC 5 cut(s) 13, 428, 852, 946, 1069
NlaIII CATG 6 cut(s) 172, 238, 418, 450, 460, 1016
NlaIV GGNNCC 2 cut(s) 694, 1109
NmeAIII GCCGAG 1 cut(s) 486
NmuCI GTSAC 1 cut(s) 809
NsbI TGCGCA 1 cut(s) 767
NspI RCATGY 1 cut(s) 460
NspV TTCGAA 1 cut(s) 310
PaeI GCATGC 1 cut(s) 460
PagI TCATGA 1 cut(s) 1012
PciSI GCTCTTC 1 cut(s) 370
PcsI WCGNNNNNNNCGW 2 cut(s) 34, 114
PdmI GAANNNNTTC 1 cut(s) 316
PfeI GAWTC 2 cut(s) 164, 371
PflFI GACNNNGTC 1 cut(s) 299
PinAI ACCGGT 1 cut(s) 1123
PkrI GCNGC 4 cut(s) 286, 380, 597, 1051
PleI GAGTC 4 cut(s) 83, 246, 404, 412
PpsI GAGTC 4 cut(s) 83, 246, 404, 412
Ppu21I YACGTR 1 cut(s) 1140
PpuMI RGGWCCY 2 cut(s) 435, 756
Psp124BI GAGCTC 3 cut(s) 133, 150, 359
Psp5II RGGWCCY 2 cut(s) 435, 756
PspN4I GGNNCC 2 cut(s) 694, 1109
PspPI GGNCC 4 cut(s) 435, 465, 480, 756
PspPPI RGGWCCY 2 cut(s) 435, 756
PsyI GACNNNGTC 1 cut(s) 299
RsaI GTAC 2 cut(s) 419, 1109
RsaNI GTAC 2 cut(s) 418, 1108
RseI CAYNNNNRTG 1 cut(s) 445
SacI GAGCTC 3 cut(s) 133, 150, 359
SapI GCTCTTC 1 cut(s) 370
SaqAI TTAA 1 cut(s) 675
SatI GCNGC 4 cut(s) 285, 379, 596, 1050
Sau3AI GATC 5 cut(s) 13, 428, 852, 946, 1069
Sau96I GGNCC 4 cut(s) 435, 465, 480, 756
SchI GAGTC 4 cut(s) 83, 247, 404, 413
ScrFI CCNGG 1 cut(s) 609
SduI GDGCHC 4 cut(s) 133, 150, 359, 885
SfaNI GCATC 1 cut(s) 1036
SfcI CTRYAG 1 cut(s) 451
SfuI TTCGAA 1 cut(s) 310
SinI GGWCC 3 cut(s) 435, 480, 756
SmiMI CAYNNNNRTG 1 cut(s) 445
SnaBI TACGTA 1 cut(s) 1140
SphI GCATGC 1 cut(s) 460
Sse9I AATT 5 cut(s) 316, 349, 634, 791, 1118
SsiI CCGC 8 cut(s) 100, 186, 287, 326, 381, 651, 804, 879
SspMI CTAG 2 cut(s) 620, 783
SstI GAGCTC 3 cut(s) 133, 150, 359
StyD4I CCNGG 1 cut(s) 607
StyI CCWWGG 1 cut(s) 555
TaaI ACNGT 7 cut(s) 44, 53, 731, 815, 926, 1090, 1112
TaiI ACGT 1 cut(s) 1142
TasI AATT 5 cut(s) 316, 349, 634, 791, 1118
TfiI GAWTC 2 cut(s) 164, 371
Tru1I TTAA 1 cut(s) 675
Tru9I TTAA 1 cut(s) 675
TscAI CASTG 3 cut(s) 820, 834, 1093
TseFI GTSAC 1 cut(s) 809
TseI GCWGC 4 cut(s) 284, 378, 595, 1049
Tsp45I GTSAC 1 cut(s) 809
TspDTI ATGAA 5 cut(s) 435, 917, 954, 1004, 1146
TspGWI ACGGA 1 cut(s) 672
TspRI CASTG 3 cut(s) 820, 834, 1093
Tth111I GACNNNGTC 1 cut(s) 299
VpaK11BI GGWCC 3 cut(s) 435, 480, 756
XapI RAATTY 3 cut(s) 316, 349, 791
XbaI TCTAGA 1 cut(s) 782
XceI RCATGY 1 cut(s) 460
XmnI GAANNNNTTC 1 cut(s) 316
XspI CTAG 2 cut(s) 620, 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.