Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013871

Physical Location & Seq

Genomic Coordinates Reverse (-)

4618939 .. 4620305

Gene Structure 1367 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G13980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGAGATCACTTGGGAGAAACCTAAATCTTCATCTCACCACCGTAACCCTTCTTTCTCCTCCACTCTCCTCGACCAAATCTACCGCTCCATCGACGATTCCTCCCCCCCTCCTCCCCTCGAATCCATCAAGAAGAAGAAGCATCACCACCAACAACGTAACGCTTCTCTACACGAAGATCGTGAAATCTCTCCTATCTATCACCGCCGCTCAATCGCCGCTGATTTCGAGAGATCTAGGAGGAAGACAGACTTTCTCAGACATTCCAACTCTAGCTCTTCTGATTCAAGCGGATTCTCCTCTTCCGAGTCAGATTCATTCCACGGACGCTCCAAATCTTCCGCTTCTCCTCCTTCTTCTTCTCGTCAACAACCGAAACCGATTCGAACATCATCCGTCGACCACTCCTCCGCCGTCCAGAAACCTAAAGAACTCGGTGGCTTCTTGAGAACGAAATCAAAAGCGTTAAAGATCTACTCCGACTTGAAAAAAGTCAAACAACCTATCTCTCCGGGCGGCAGACTCGCTACTTTCCTTAACTCTCTTTTCACCAACGCCGCCACTAACCCTAAGAAGCACAAGAAAACTACCACCGTCGCCGTCGTGGAAGAACCACACTCCTCCTCCACATGCTCCTCCGCGTCGTCCTTCTCTAGGTCTTGCTTGAGCAAAACTCCATCGTCTAGCGGCAAATCAAAAAGATCCGTACGGTTCTGTCCAGTCAATGTGATCCTTGACGAAGATTCCTCCTTTACCATGCCTTACGCTTATAACAACGAAAGACTCTACGATAACAACGAAGCTAAACGCGTGGAAGAGCATCGCCGTGTCATCCAAGCAGCCAAAGATCTTCTTAGAACTTACCATAACAAGAACAAAGTTACAACTACGAACATCAATAACGTAGAAGAAGATGATGAAGACGATGCTGCGAGTTGTGCAAGCTCTGATCTATTCGAGTTGGAGAATCTGTCGGCTATTGGGATCGAGAGGTATAGAGAAGAGCTTCCGGTTTACGAAACCACTCGTCTTGATAATATGAATCGAGTCATTGCTACTGGTTTAATTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007623 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009733 GO:0009914 GO:0009966 GO:0009967 GO:0010033 GO:0010646 GO:0010647 GO:0010817 GO:0010928 GO:0010929 GO:0016020 GO:0023051 GO:0023056 GO:0040008 GO:0042221 GO:0044464 GO:0048511 GO:0048518 GO:0048522 GO:0048580 GO:0048583 GO:0048584 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080050 GO:0080113 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

357

Amino Acids

40.08

Weight (kDa)

9.38

Isoelectric Point (pI)

70.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54200 AT3G13980
fragaria_vesca	FvH4_6g34500
malus_domestica	MD09G1185600.v1.1 MD17G1170300.v1.1
prunus_persica	Prupe.3G043400_v2.0.a1
pyrus_communis	pycom09g10290 pycom12419g00180
rosa_chinensis	RchiOBHm_Chr2g0144811
rosa_laevigata	RLG00000020115
rosa_multiflora	Rmu_sc0002354.1_g000024
rosa_roxburghii	Rroxscaffold_2G00100950
rosa_rugosa	Rorug02G0390000
rosa_samantha	Rh2AG441700 Rh2BG452300 Rh2DG462100
rosa_wichuraiana	Rw2G036120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	771
AccBSI	CCGCTC	2 cut(s)	87, 210
AccI	GTMKAC	1 cut(s)	399
AccII	CGCG	2 cut(s)	641, 810
AclWI	GGATC	3 cut(s)	696, 724, 992
AfaI	GTAC	1 cut(s)	708
AfiI	CCNNNNNNNGG	1 cut(s)	654
AflIII	ACRYGT	1 cut(s)	808
AgsI	TTSAA	2 cut(s)	288, 487
AluBI	AGCT	4 cut(s)	276, 803, 945, 1006
AluI	AGCT	4 cut(s)	276, 803, 945, 1006
AlwI	GGATC	3 cut(s)	696, 724, 992
ApeKI	GCWGC	2 cut(s)	839, 929
Asp700I	GAANNNNTTC	1 cut(s)	1005
AsuC2I	CCSGG	1 cut(s)	513
AsuHPI	GGTGA	4 cut(s)	29, 137, 194, 541
AsuII	TTCGAA	1 cut(s)	385
BbsI	GAAGAC	2 cut(s)	251, 927
BbvI	GCAGC	2 cut(s)	851, 916
BccI	CCATC	3 cut(s)	98, 134, 685
BceAI	ACGGC	3 cut(s)	398, 584, 810
BcnI	CCSGG	1 cut(s)	513
BfaI	CTAG	4 cut(s)	237, 273, 654, 684
BglII	AGATCT	3 cut(s)	233, 471, 847
BisI	GCNGC	7 cut(s)	208, 219, 517, 558, 688, 840, 930
BlsI	GCNGC	7 cut(s)	209, 220, 518, 559, 689, 841, 931
Bme1390I	CCNGG	1 cut(s)	513
BmrFI	CCNGG	1 cut(s)	513
BmsI	GCATC	3 cut(s)	151, 829, 916
BpiI	GAAGAC	2 cut(s)	251, 927
BplI	GAGNNNNNCTC	2 cut(s)	658, 690
Bpu14I	TTCGAA	1 cut(s)	385
BpuEI	CTTGAG	2 cut(s)	466, 685
BpuMI	CCSGG	1 cut(s)	513
BsaJI	CCNNGG	1 cut(s)	322
BsaWI	WCCGGW	1 cut(s)	1009
Bsc4I	CCNNNNNNNGG	1 cut(s)	654
Bse1I	ACTGG	2 cut(s)	719, 1063
Bse3DI	GCAATG	1 cut(s)	1050
BseDI	CCNNGG	1 cut(s)	322
BseGI	GGATG	2 cut(s)	392, 831
BseLI	CCNNNNNNNGG	1 cut(s)	654
BseMI	GCAATG	1 cut(s)	1050
BseMII	CTCAG	1 cut(s)	271
BseNI	ACTGG	2 cut(s)	719, 1063
BseRI	GAGGAG	9 cut(s)	49, 59, 102, 289, 339, 397, 610, 613, 625
BseXI	GCAGC	2 cut(s)	851, 916
Bsh1236I	CGCG	2 cut(s)	641, 810
BsiSI	CCGG	2 cut(s)	512, 1010
BsiWI	CGTACG	1 cut(s)	706
BslI	CCNNNNNNNGG	1 cut(s)	654
Bsp119I	TTCGAA	1 cut(s)	385
Bsp143I	GATC	9 cut(s)	6, 178, 233, 471, 701, 729, 847, 949, 984
BspCNI	CTCAG	1 cut(s)	270
BspFNI	CGCG	2 cut(s)	641, 810
BspPI	GGATC	3 cut(s)	696, 724, 992
BspQI	GCTCTTC	3 cut(s)	283, 810, 996
BspT104I	TTCGAA	1 cut(s)	385
BsrBI	CCGCTC	2 cut(s)	87, 210
BsrDI	GCAATG	1 cut(s)	1050
BsrI	ACTGG	2 cut(s)	719, 1063
BssECI	CCNNGG	1 cut(s)	322
BssMI	GATC	9 cut(s)	6, 178, 233, 471, 701, 729, 847, 949, 984
Bst4CI	ACNGT	3 cut(s)	44, 595, 711
Bst6I	CTCTTC	4 cut(s)	283, 307, 810, 996
BstBI	TTCGAA	1 cut(s)	385
BstC8I	GCNNGC	1 cut(s)	943
BstDEI	CTNAG	3 cut(s)	257, 570, 854
BstDSI	CCRYGG	1 cut(s)	322
BstENI	CCTNNNNNAGG	1 cut(s)	652
BstF5I	GGATG	2 cut(s)	392, 831
BstFNI	CGCG	2 cut(s)	641, 810
BstKTI	GATC	9 cut(s)	9, 181, 236, 474, 704, 732, 850, 952, 987
BstMBI	GATC	9 cut(s)	6, 178, 233, 471, 701, 729, 847, 949, 984
BstMWI	GCNNNNNNNGC	1 cut(s)	938
BstNSI	RCATGY	1 cut(s)	633
BstSCI	CCNGG	1 cut(s)	511
BstUI	CGCG	2 cut(s)	641, 810
BstV1I	GCAGC	2 cut(s)	851, 916
BstV2I	GAAGAC	2 cut(s)	251, 927
BstX2I	RGATCY	4 cut(s)	233, 471, 701, 847
BstYI	RGATCY	4 cut(s)	233, 471, 701, 847
BtgI	CCRYGG	1 cut(s)	322
BtgZI	GCGATG	1 cut(s)	806
BtsCI	GGATG	2 cut(s)	392, 831
Cac8I	GCNNGC	1 cut(s)	943
CseI	GACGC	2 cut(s)	336, 630
Csp6I	GTAC	1 cut(s)	707
CspCI	CAANNNNNGTGG	2 cut(s)	1012, 1047
CviAII	CATG	2 cut(s)	630, 757
CviJI	RGCY	7 cut(s)	276, 441, 803, 842, 945, 977, 1006
CviKI_1	RGCY	7 cut(s)	276, 441, 803, 842, 945, 977, 1006
CviQI	GTAC	1 cut(s)	707
DdeI	CTNAG	3 cut(s)	257, 570, 854
DpnI	GATC	9 cut(s)	8, 180, 235, 473, 703, 731, 849, 951, 986
DpnII	GATC	9 cut(s)	6, 178, 233, 471, 701, 729, 847, 949, 984
Eam1104I	CTCTTC	4 cut(s)	283, 307, 810, 996
EarI	CTCTTC	4 cut(s)	283, 307, 810, 996
EciI	GGCGGA	1 cut(s)	400
EcoNI	CCTNNNNNAGG	1 cut(s)	652
FaeI	CATG	2 cut(s)	633, 760
FaiI	YATR	7 cut(s)	631, 758, 771, 867, 996, 1040, 1072
FalI	AAGNNNNNCTT	4 cut(s)	236, 268, 837, 869
FatI	CATG	2 cut(s)	629, 756
FblI	GTMKAC	1 cut(s)	399
Fnu4HI	GCNGC	7 cut(s)	208, 219, 517, 558, 688, 840, 930
FokI	GGATG	2 cut(s)	379, 818
Fsp4HI	GCNGC	7 cut(s)	208, 219, 517, 558, 688, 840, 930
FspBI	CTAG	4 cut(s)	237, 273, 654, 684
GluI	GCNGC	7 cut(s)	208, 219, 517, 558, 688, 840, 930
HapII	CCGG	2 cut(s)	512, 1010
HgaI	GACGC	2 cut(s)	336, 630
Hin1II	CATG	2 cut(s)	633, 760
HincII	GTYRAC	2 cut(s)	368, 400
HindII	GTYRAC	2 cut(s)	368, 400
HpaII	CCGG	2 cut(s)	512, 1010
HphI	GGTGA	4 cut(s)	29, 137, 194, 541
Hpy166II	GTNNAC	3 cut(s)	368, 400, 1015
Hpy188I	TCNGA	6 cut(s)	260, 283, 307, 313, 481, 949
Hpy188III	TCNNGA	7 cut(s)	130, 182, 229, 418, 445, 988, 1031
Hpy8I	GTNNAC	3 cut(s)	368, 400, 1015
Hpy99I	CGWCG	5 cut(s)	98, 401, 599, 605, 646
HpyAV	CCTTC	3 cut(s)	60, 363, 658
HpyCH4III	ACNGT	3 cut(s)	44, 595, 711
HpyCH4IV	ACGT	2 cut(s)	157, 903
HpyCH4V	TGCA	1 cut(s)	941
HpyF10VI	GCNNNNNNNGC	1 cut(s)	938
HpyF3I	CTNAG	3 cut(s)	257, 570, 854
HpySE526I	ACGT	2 cut(s)	157, 903
Hsp92II	CATG	2 cut(s)	633, 760
Kzo9I	GATC	9 cut(s)	6, 178, 233, 471, 701, 729, 847, 949, 984
LguI	GCTCTTC	3 cut(s)	283, 810, 996
LmnI	GCTCC	3 cut(s)	92, 335, 638
LpnPI	CCDG	5 cut(s)	431, 525, 732, 1023, 1044
Lsp1109I	GCAGC	2 cut(s)	851, 916
LweI	GCATC	3 cut(s)	151, 829, 916
MaeI	CTAG	4 cut(s)	237, 273, 654, 684
MaeII	ACGT	2 cut(s)	157, 903
MaeIII	GTNAC	3 cut(s)	44, 158, 880
MalI	GATC	9 cut(s)	8, 180, 235, 473, 703, 731, 849, 951, 986
MbiI	CCGCTC	2 cut(s)	87, 210
MboI	GATC	9 cut(s)	6, 178, 233, 471, 701, 729, 847, 949, 984
MflI	RGATCY	4 cut(s)	233, 471, 701, 847
MluCI	AATT	1 cut(s)	1065
MluI	ACGCGT	1 cut(s)	808
MlyI	GAGTC	4 cut(s)	317, 516, 777, 1056
MmeI	TCCRAC	3 cut(s)	291, 504, 942
MroXI	GAANNNNTTC	1 cut(s)	1005
MseI	TTAA	3 cut(s)	467, 537, 1064
MslI	CAYNNNNRTG	1 cut(s)	825
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	2 cut(s)	512, 1010
MspR9I	CCNGG	1 cut(s)	513
MvnI	CGCG	2 cut(s)	641, 810
MwoI	GCNNNNNNNGC	1 cut(s)	938
NciI	CCSGG	1 cut(s)	513
NdeII	GATC	9 cut(s)	6, 178, 233, 471, 701, 729, 847, 949, 984
NlaIII	CATG	2 cut(s)	633, 760
NspI	RCATGY	1 cut(s)	633
NspV	TTCGAA	1 cut(s)	385
PciSI	GCTCTTC	3 cut(s)	283, 810, 996
PcsI	WCGNNNNNNNCGW	1 cut(s)	795
PdmI	GAANNNNTTC	1 cut(s)	1005
PfeI	GAWTC	9 cut(s)	98, 122, 284, 294, 314, 382, 743, 967, 1042
Pfl23II	CGTACG	1 cut(s)	706
PkrI	GCNGC	7 cut(s)	209, 220, 518, 559, 689, 841, 931
PleI	GAGTC	4 cut(s)	316, 516, 777, 1055
PpsI	GAGTC	4 cut(s)	316, 516, 777, 1055
PsiI	TTATAA	1 cut(s)	771
PspLI	CGTACG	1 cut(s)	706
PsuI	RGATCY	4 cut(s)	233, 471, 701, 847
RsaI	GTAC	1 cut(s)	708
RsaNI	GTAC	1 cut(s)	707
RseI	CAYNNNNRTG	1 cut(s)	825
SalI	GTCGAC	1 cut(s)	398
SapI	GCTCTTC	3 cut(s)	283, 810, 996
SaqAI	TTAA	3 cut(s)	467, 537, 1064
SatI	GCNGC	7 cut(s)	208, 219, 517, 558, 688, 840, 930
Sau3AI	GATC	9 cut(s)	6, 178, 233, 471, 701, 729, 847, 949, 984
SchI	GAGTC	4 cut(s)	317, 516, 777, 1056
ScrFI	CCNGG	1 cut(s)	513
SfaNI	GCATC	3 cut(s)	151, 829, 916
SfuI	TTCGAA	1 cut(s)	385
SmiMI	CAYNNNNRTG	1 cut(s)	825
SmlI	CTYRAG	2 cut(s)	445, 664
SmoI	CTYRAG	2 cut(s)	445, 664
Sse9I	AATT	1 cut(s)	1065
SspMI	CTAG	4 cut(s)	237, 273, 654, 684
StyD4I	CCNGG	1 cut(s)	511
TaaI	ACNGT	3 cut(s)	44, 595, 711
TaiI	ACGT	2 cut(s)	160, 906
TaqI	TCGA	9 cut(s)	72, 93, 120, 228, 385, 399, 957, 987, 1045
TasI	AATT	1 cut(s)	1065
TauI	GCSGC	5 cut(s)	210, 221, 519, 560, 690
TfiI	GAWTC	9 cut(s)	98, 122, 284, 294, 314, 382, 743, 967, 1042
Tru1I	TTAA	3 cut(s)	467, 537, 1064
Tru9I	TTAA	3 cut(s)	467, 537, 1064
TseI	GCWGC	2 cut(s)	839, 929
TspDTI	ATGAA	4 cut(s)	21, 306, 933, 1055
TspGWI	ACGGA	3 cut(s)	339, 385, 694
XagI	CCTNNNNNAGG	1 cut(s)	652
XceI	RCATGY	1 cut(s)	633
XmiI	GTMKAC	1 cut(s)	399
XmnI	GAANNNNTTC	1 cut(s)	1005
XspI	CTAG	4 cut(s)	237, 273, 654, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.