AT1G54730

sugar transporter

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
20424332 .. 20430194
5863 bp
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UTR
Exon/CDS
Intron
AT1G54730.11

Sequence Viewer

Length: 204 bp
ATGATCGGCGCAGCTATGAGTGGACGAATCGCCGATATGATAGGCAGACGAGCTACTATGGGTTTCTCGGAGATGTTTTGCATTCTCGGCTGGTTAGCAATCTACCTTTCTAAGGTTGCAATTTGGCTTGACGTTGGGAGATTCTTGGTTGGTTATGGAATGGGCGTTTTTTCGTTTGTGGTAAAATCTATAAACTCTAGCTAG

Protein Analysis

67

Amino Acids

7.3

Weight (kDa)

9.62

Isoelectric Point (pI)

29.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 36 - 334 7.9e-57 Sugar (and other) transporter
MFS_1 PF07690 42 - 334 2.1e-22 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018322)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54730
malus_domestica MD04G1100200.v1.1
rosa_chinensis RchiOBHm_Chr3g0463431 RchiOBHm_Chr6g0293031
rosa_laevigata RLG00000014314
rosa_multiflora Rmu_co8197710.1_g000001 Rmu_sc0025580.1_g000001
rosa_rugosa Rorug01G0145000.1
rosa_samantha Rh2AG056800
rosa_wichuraiana Rw5G038540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 112
AluBI AGCT 3 cut(s) 14, 53, 201
AluI AGCT 3 cut(s) 14, 53, 201
ApeKI GCWGC 1 cut(s) 11
AspLEI GCGC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 23
BfaI CTAG 2 cut(s) 198, 202
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bsc4I CCNNNNNNNGG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 112
BseXI GCAGC 1 cut(s) 23
BslI CCNNNNNNNGG 1 cut(s) 112
BsmI GAATGC 1 cut(s) 81
Bsp143I GATC 1 cut(s) 3
BssMI GATC 1 cut(s) 3
BstDEI CTNAG 1 cut(s) 111
BstENI CCTNNNNNAGG 1 cut(s) 110
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 87
BstV1I GCAGC 1 cut(s) 23
CfoI GCGC 1 cut(s) 11
CviJI RGCY 5 cut(s) 14, 53, 90, 127, 201
CviKI_1 RGCY 5 cut(s) 14, 53, 90, 127, 201
DdeI CTNAG 1 cut(s) 111
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
EcoNI CCTNNNNNAGG 1 cut(s) 110
FaiI YATR 5 cut(s) 17, 38, 59, 156, 191
Fnu4HI GCNGC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 2 cut(s) 198, 202
GlaI GCGC 1 cut(s) 10
GluI GCNGC 1 cut(s) 12
HhaI GCGC 1 cut(s) 11
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HinfI GANTC 2 cut(s) 27, 141
Hpy166II GTNNAC 1 cut(s) 23
Hpy188I TCNGA 1 cut(s) 70
Hpy8I GTNNAC 1 cut(s) 23
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 2 cut(s) 81, 119
HpyF10VI GCNNNNNNNGC 1 cut(s) 87
HpyF3I CTNAG 1 cut(s) 111
HpySE526I ACGT 1 cut(s) 132
HspAI GCGC 1 cut(s) 9
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 1 cut(s) 76
Lsp1109I GCAGC 1 cut(s) 23
MaeI CTAG 2 cut(s) 198, 202
MaeII ACGT 1 cut(s) 132
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MluCI AATT 1 cut(s) 120
Mva1269I GAATGC 1 cut(s) 81
MwoI GCNNNNNNNGC 1 cut(s) 87
NdeII GATC 1 cut(s) 3
NmeAIII GCCGAG 1 cut(s) 66
PctI GAATGC 1 cut(s) 81
PfeI GAWTC 2 cut(s) 27, 141
PkrI GCNGC 1 cut(s) 13
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 1 cut(s) 3
SetI ASST 6 cut(s) 16, 55, 108, 117, 135, 203
SgeI CNNG 6 cut(s) 62, 79, 98, 103, 140, 157
Sse9I AATT 1 cut(s) 120
SspMI CTAG 2 cut(s) 198, 202
TaiI ACGT 1 cut(s) 135
TasI AATT 1 cut(s) 120
TfiI GAWTC 2 cut(s) 27, 141
TseI GCWGC 1 cut(s) 11
XagI CCTNNNNNAGG 1 cut(s) 110
XspI CTAG 2 cut(s) 198, 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.