Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0018322

Physical Location & Seq

Genomic Coordinates Forward (+)

4543105 .. 4552688

Gene Structure 9584 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG056800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGAGGTTGACGAGGAGTGGAGTAGATGGAGGTGGGTGAGGATGATGGGTTTACTGATGGTTGACTCTCAATGGATGGGAATGGCAGAAAACTCTAGAGAGGCTCCTTCCTCACTCTCTAGGGCGGCAACTACTAACCAGGCAGTGAGAATGTCAGCTACTTTCTATATTACAAGATGGCTAGCAATCTATTTCTCTGAGGAAGCTTGGTCACTTGACATAGGAAGGTTTTTAACTGGATATCGAATTGAAGTTCTCTCTTATGTGCAACGTGGATCAACAGGTCTCAATATTTATAGCAGAAATCGCGCCAAAAATCTCCATGGAGGACTTACAACACTAAATCAGGACCATTTTCGAAAATCGTGTTGGGACTTGGACTTGTCCGGTCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

131

Amino Acids

15.3

Weight (kDa)

8.93

Isoelectric Point (pI)

55.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54730
malus_domestica	MD04G1100200.v1.1
rosa_chinensis	RchiOBHm_Chr3g0463431 RchiOBHm_Chr6g0293031
rosa_laevigata	RLG00000014314
rosa_multiflora	Rmu_co8197710.1_g000001 Rmu_sc0025580.1_g000001
rosa_rugosa	Rorug01G0145000.1
rosa_samantha	Rh2AG056800
rosa_wichuraiana	Rw5G038540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	309
AciI	CCGC	1 cut(s)	125
AclWI	GGATC	1 cut(s)	283
AgsI	TTSAA	1 cut(s)	251
AjnI	CCWGG	1 cut(s)	138
AjuI	GAANNNNNNNTTGG	2 cut(s)	352, 384
AluBI	AGCT	2 cut(s)	158, 206
AluI	AGCT	2 cut(s)	158, 206
Alw26I	GTCTC	1 cut(s)	290
AlwI	GGATC	1 cut(s)	283
AspLEI	GCGC	1 cut(s)	311
AspS9I	GGNCC	1 cut(s)	349
AsuHPI	GGTGA	1 cut(s)	49
AsuII	TTCGAA	1 cut(s)	358
AsuNHI	GCTAGC	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	349
BccI	CCATC	5 cut(s)	21, 40, 52, 70, 171
BciT130I	CCWGG	1 cut(s)	140
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	4 cut(s)	96, 120, 182, 394
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	349
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	140
BmtI	GCTAGC	1 cut(s)	185
Bpu14I	TTCGAA	1 cut(s)	358
BsaI	GGTCTC	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	322
BsaWI	WCCGGW	1 cut(s)	386
Bse1I	ACTGG	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	322
BseGI	GGATG	2 cut(s)	48, 81
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	1 cut(s)	241
BseRI	GAGGAG	1 cut(s)	29
Bsh1236I	CGCG	1 cut(s)	309
Bsh1285I	CGRYCG	1 cut(s)	391
BsiEI	CGRYCG	1 cut(s)	391
BsiSI	CCGG	1 cut(s)	387
BslFI	GGGAC	1 cut(s)	386
BsmAI	GTCTC	1 cut(s)	290
BsmFI	GGGAC	1 cut(s)	386
Bso31I	GGTCTC	1 cut(s)	290
Bsp119I	TTCGAA	1 cut(s)	358
Bsp143I	GATC	1 cut(s)	275
Bsp19I	CCATGG	1 cut(s)	322
BspACI	CCGC	1 cut(s)	125
BspCNI	CTCAG	1 cut(s)	190
BspFNI	CGCG	1 cut(s)	309
BspLI	GGNNCC	1 cut(s)	105
BspOI	GCTAGC	1 cut(s)	185
BspPI	GGATC	1 cut(s)	283
BspT104I	TTCGAA	1 cut(s)	358
BspTNI	GGTCTC	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	322
BssMI	GATC	1 cut(s)	275
BssT1I	CCWWGG	1 cut(s)	322
Bst2UI	CCWGG	1 cut(s)	140
BstBI	TTCGAA	1 cut(s)	358
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	198
BstDSI	CCRYGG	1 cut(s)	322
BstF5I	GGATG	2 cut(s)	48, 81
BstFNI	CGCG	1 cut(s)	309
BstHHI	GCGC	1 cut(s)	311
BstKTI	GATC	1 cut(s)	278
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	1 cut(s)	275
BstMCI	CGRYCG	1 cut(s)	391
BstMWI	GCNNNNNNNGC	1 cut(s)	306
BstNI	CCWGG	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	138
BstUI	CGCG	1 cut(s)	309
BtgI	CCRYGG	1 cut(s)	322
BtsCI	GGATG	2 cut(s)	48, 81
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	183
CfoI	GCGC	1 cut(s)	311
Cfr13I	GGNCC	1 cut(s)	349
CviAII	CATG	1 cut(s)	323
CviJI	RGCY	4 cut(s)	104, 158, 181, 206
CviKI_1	RGCY	4 cut(s)	104, 158, 181, 206
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	1 cut(s)	277
DpnII	GATC	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	322
Eco31I	GGTCTC	1 cut(s)	290
Eco32I	GATATC	1 cut(s)	242
Eco47I	GGWCC	1 cut(s)	349
EcoRII	CCWGG	1 cut(s)	138
EcoRV	GATATC	1 cut(s)	242
EcoT14I	CCWWGG	1 cut(s)	322
ErhI	CCWWGG	1 cut(s)	322
FaeI	CATG	1 cut(s)	326
FaiI	YATR	5 cut(s)	168, 221, 264, 297, 324
FaqI	GGGAC	1 cut(s)	386
FatI	CATG	1 cut(s)	322
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	2 cut(s)	55, 88
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	4 cut(s)	96, 120, 182, 394
GlaI	GCGC	1 cut(s)	310
GluI	GCNGC	1 cut(s)	126
HapII	CCGG	1 cut(s)	387
HhaI	GCGC	1 cut(s)	311
Hin1II	CATG	1 cut(s)	326
Hin6I	GCGC	1 cut(s)	309
HinP1I	GCGC	1 cut(s)	309
HincII	GTYRAC	2 cut(s)	10, 64
HindII	GTYRAC	2 cut(s)	10, 64
HindIII	AAGCTT	1 cut(s)	204
HinfI	GANTC	1 cut(s)	65
HpaII	CCGG	1 cut(s)	387
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	3 cut(s)	10, 53, 64
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	2 cut(s)	96, 347
Hpy8I	GTNNAC	3 cut(s)	10, 53, 64
HpyAV	CCTTC	2 cut(s)	117, 219
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	1 cut(s)	268
HpyF10VI	GCNNNNNNNGC	1 cut(s)	306
HpyF3I	CTNAG	1 cut(s)	198
HpySE526I	ACGT	1 cut(s)	271
Hsp92II	CATG	1 cut(s)	326
HspAI	GCGC	1 cut(s)	309
Kzo9I	GATC	1 cut(s)	275
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	5 cut(s)	125, 152, 222, 267, 332
MaeI	CTAG	4 cut(s)	96, 120, 182, 394
MaeII	ACGT	1 cut(s)	271
MaeIII	GTNAC	1 cut(s)	210
MalI	GATC	1 cut(s)	277
MboI	GATC	1 cut(s)	275
MluCI	AATT	1 cut(s)	246
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	7 cut(s)	7, 24, 33, 94, 121, 193, 320
MseI	TTAA	1 cut(s)	233
MspI	CCGG	1 cut(s)	387
MspR9I	CCNGG	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	140
MvnI	CGCG	1 cut(s)	309
MwoI	GCNNNNNNNGC	1 cut(s)	306
NcoI	CCATGG	1 cut(s)	322
NdeII	GATC	1 cut(s)	275
NheI	GCTAGC	1 cut(s)	181
NlaIII	CATG	1 cut(s)	326
NlaIV	GGNNCC	1 cut(s)	105
NmuCI	GTSAC	1 cut(s)	210
NspV	TTCGAA	1 cut(s)	358
PkrI	GCNGC	1 cut(s)	127
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	349
SaqAI	TTAA	1 cut(s)	233
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	1 cut(s)	275
Sau96I	GGNCC	1 cut(s)	349
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	140
SetI	ASST	7 cut(s)	9, 35, 160, 208, 230, 274, 286
SfuI	TTCGAA	1 cut(s)	358
SinI	GGWCC	1 cut(s)	349
Sse9I	AATT	1 cut(s)	246
SsiI	CCGC	1 cut(s)	125
SspI	AATATT	1 cut(s)	292
SspMI	CTAG	4 cut(s)	96, 120, 182, 394
StyD4I	CCNGG	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	322
TaiI	ACGT	1 cut(s)	274
TaqI	TCGA	2 cut(s)	244, 358
TasI	AATT	1 cut(s)	246
TauI	GCSGC	1 cut(s)	128
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TscAI	CASTG	1 cut(s)	150
TseFI	GTSAC	1 cut(s)	210
Tsp45I	GTSAC	1 cut(s)	210
TspRI	CASTG	1 cut(s)	150
VpaK11BI	GGWCC	1 cut(s)	349
XbaI	TCTAGA	1 cut(s)	95
XspI	CTAG	4 cut(s)	96, 120, 182, 394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.