Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0018322

Physical Location & Seq

Genomic Coordinates Forward (+)

67886755 .. 67888446

Gene Structure 1692 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G038540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCTCAAGAGACGTGCCACTGGATACAAGAAGAAGGTGTGGAGAAAGAAGCTAAAGGATGGTGTCAGCGAGTCTCAATTCAACCAAGTCTTGAACATTGAACTGGATCAAATCATTGAGGGAGCTTGGTCACTTGACATAGGAAGGTTTTTAACTGGATATATATCGAATTGGAGTTTTCTCTTATGTGGTCCCAATATTTATAGCAGAAATCGCGCCAAGAATCTCCATGGAGGGCTTACAACACTAAATCAATTTCATTTTGTAATAGGAACAATTATAAGTTGGAGGACACTTAGGGCCTGCTTTGGTTGCTCTTTACAATCCACTTCAACTTGCAGCTTCAGCCTTTTTATCAAGAGTTTTCCTCGGATACCCTATTTATTTGGGAAGTTTTGCTCCCACCACACCCTCGATTTCTGTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

142

Amino Acids

16.4

Weight (kDa)

9.8

Isoelectric Point (pI)

33.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0018322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54730
malus_domestica	MD04G1100200.v1.1
rosa_chinensis	RchiOBHm_Chr3g0463431 RchiOBHm_Chr6g0293031
rosa_laevigata	RLG00000014314
rosa_multiflora	Rmu_co8197710.1_g000001 Rmu_sc0025580.1_g000001
rosa_rugosa	Rorug01G0145000.1
rosa_samantha	Rh2AG056800
rosa_wichuraiana	Rw5G038540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	281
AccII	CGCG	1 cut(s)	216
AclWI	GGATC	1 cut(s)	114
AcuI	CTGAAG	1 cut(s)	328
AgsI	TTSAA	4 cut(s)	82, 94, 101, 333
AjiI	CACGTC	1 cut(s)	14
AluBI	AGCT	3 cut(s)	52, 125, 342
AluI	AGCT	3 cut(s)	52, 125, 342
Alw26I	GTCTC	2 cut(s)	4, 78
AlwI	GGATC	1 cut(s)	114
AoxI	GGCC	1 cut(s)	300
ApeKI	GCWGC	1 cut(s)	339
AspLEI	GCGC	1 cut(s)	218
AspS9I	GGNCC	2 cut(s)	191, 300
AvaII	GGWCC	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	351
BccI	CCATC	1 cut(s)	53
BciVI	GTATCC	2 cut(s)	17, 366
BcoDI	GTCTC	2 cut(s)	4, 78
BfuI	GTATCC	2 cut(s)	17, 366
BisI	GCNGC	1 cut(s)	340
BlsI	GCNGC	1 cut(s)	341
Bme18I	GGWCC	1 cut(s)	191
BmgBI	CACGTC	1 cut(s)	14
BmgT120I	GGNCC	2 cut(s)	191, 300
BmiI	GGNNCC	1 cut(s)	193
BplI	GAGNNNNNCTC	2 cut(s)	352, 384
BsaBI	GATNNNNATC	1 cut(s)	163
BsaJI	CCNNGG	2 cut(s)	229, 368
Bse1I	ACTGG	3 cut(s)	25, 108, 160
Bse8I	GATNNNNATC	1 cut(s)	163
BseDI	CCNNGG	2 cut(s)	229, 368
BseGI	GGATG	1 cut(s)	64
BseJI	GATNNNNATC	1 cut(s)	163
BseNI	ACTGG	3 cut(s)	25, 108, 160
BseXI	GCAGC	1 cut(s)	351
Bsh1236I	CGCG	1 cut(s)	216
BshFI	GGCC	1 cut(s)	302
BslFI	GGGAC	1 cut(s)	177
BsmAI	GTCTC	2 cut(s)	4, 78
BsmBI	CGTCTC	1 cut(s)	4
BsmFI	GGGAC	1 cut(s)	177
BsnI	GGCC	1 cut(s)	302
Bsp143I	GATC	1 cut(s)	106
Bsp19I	CCATGG	1 cut(s)	229
BspANI	GGCC	1 cut(s)	302
BspFNI	CGCG	1 cut(s)	216
BspLI	GGNNCC	1 cut(s)	193
BspPI	GGATC	1 cut(s)	114
BsrI	ACTGG	3 cut(s)	25, 108, 160
BssECI	CCNNGG	2 cut(s)	229, 368
BssMI	GATC	1 cut(s)	106
BssT1I	CCWWGG	1 cut(s)	229
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	1 cut(s)	296
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	64
BstFNI	CGCG	1 cut(s)	216
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	1 cut(s)	109
BstMAI	GTCTC	2 cut(s)	4, 78
BstMBI	GATC	1 cut(s)	106
BstMWI	GCNNNNNNNGC	3 cut(s)	213, 312, 345
BstUI	CGCG	1 cut(s)	216
BstV1I	GCAGC	1 cut(s)	351
BsuI	GTATCC	2 cut(s)	17, 366
BsuRI	GGCC	1 cut(s)	302
BtgI	CCRYGG	1 cut(s)	229
BtrI	CACGTC	1 cut(s)	14
BtsCI	GGATG	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	1 cut(s)	304
CfoI	GCGC	1 cut(s)	218
Cfr13I	GGNCC	2 cut(s)	191, 300
CviAII	CATG	1 cut(s)	230
CviJI	RGCY	6 cut(s)	52, 125, 238, 302, 342, 348
CviKI_1	RGCY	6 cut(s)	52, 125, 238, 302, 342, 348
DdeI	CTNAG	1 cut(s)	296
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	328
EcoO109I	RGGNCCY	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	229
Esp3I	CGTCTC	1 cut(s)	4
FaeI	CATG	1 cut(s)	233
FaiI	YATR	7 cut(s)	140, 162, 164, 187, 204, 231, 281
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	1 cut(s)	229
Fnu4HI	GCNGC	1 cut(s)	340
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	1 cut(s)	340
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	1 cut(s)	340
HaeIII	GGCC	1 cut(s)	302
HhaI	GCGC	1 cut(s)	218
Hin1II	CATG	1 cut(s)	233
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HinfI	GANTC	2 cut(s)	71, 223
Hpy188I	TCNGA	1 cut(s)	372
Hpy188III	TCNNGA	3 cut(s)	7, 91, 358
HpyAV	CCTTC	2 cut(s)	28, 138
HpyCH4IV	ACGT	1 cut(s)	13
HpyCH4V	TGCA	1 cut(s)	339
HpyF10VI	GCNNNNNNNGC	3 cut(s)	213, 312, 345
HpyF3I	CTNAG	1 cut(s)	296
HpySE526I	ACGT	1 cut(s)	13
Hsp92II	CATG	1 cut(s)	233
HspAI	GCGC	1 cut(s)	216
Kzo9I	GATC	1 cut(s)	106
LmnI	GCTCC	2 cut(s)	122, 404
LpnPI	CCDG	4 cut(s)	6, 89, 141, 316
Lsp1109I	GCAGC	1 cut(s)	351
MaeII	ACGT	1 cut(s)	13
MaeIII	GTNAC	1 cut(s)	129
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	1 cut(s)	43
MluCI	AATT	4 cut(s)	77, 169, 254, 276
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	1 cut(s)	266
MnlI	CCTC	5 cut(s)	112, 227, 282, 378, 422
MseI	TTAA	2 cut(s)	152, 427
MvnI	CGCG	1 cut(s)	216
MwoI	GCNNNNNNNGC	3 cut(s)	213, 312, 345
NcoI	CCATGG	1 cut(s)	229
NdeII	GATC	1 cut(s)	106
NlaIII	CATG	1 cut(s)	233
NlaIV	GGNNCC	1 cut(s)	193
NmuCI	GTSAC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	223
PkrI	GCNGC	1 cut(s)	341
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PsiI	TTATAA	1 cut(s)	281
PspN4I	GGNNCC	1 cut(s)	193
PspPI	GGNCC	2 cut(s)	191, 300
SaqAI	TTAA	2 cut(s)	152, 427
SatI	GCNGC	1 cut(s)	340
Sau3AI	GATC	1 cut(s)	106
Sau96I	GGNCC	2 cut(s)	191, 300
SchI	GAGTC	1 cut(s)	80
SetI	ASST	6 cut(s)	16, 39, 54, 127, 149, 344
SinI	GGWCC	1 cut(s)	191
SmlI	CTYRAG	1 cut(s)	5
SmoI	CTYRAG	1 cut(s)	5
Sse9I	AATT	4 cut(s)	77, 169, 254, 276
SspI	AATATT	1 cut(s)	199
StyI	CCWWGG	1 cut(s)	229
TaiI	ACGT	1 cut(s)	16
TaqI	TCGA	2 cut(s)	167, 414
TasI	AATT	4 cut(s)	77, 169, 254, 276
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	2 cut(s)	152, 427
Tru9I	TTAA	2 cut(s)	152, 427
TscAI	CASTG	1 cut(s)	25
TseFI	GTSAC	1 cut(s)	129
TseI	GCWGC	1 cut(s)	339
Tsp45I	GTSAC	1 cut(s)	129
TspDTI	ATGAA	1 cut(s)	248
TspRI	CASTG	1 cut(s)	25
VpaK11BI	GGWCC	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.