RLG00000014314
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
51197157 .. 51197856
700 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014314

Sequence Viewer

Length: 330 bp
ATGACTCTTTGTTTATTTGCGAATTGTAGAGACTTGCTGGGGAATAAGCTAACTGATCAAATCTTGGATGAGATTGGCAATTGTGCTTCTCTTATGTATCTGGATTTGGCTGACAATAATCTGTTTGGAGACATACCCTTCTCAGTTTCAAAGCTTAATAAGCTTGAGGTTTTGGATGGAGTGAGTGAGTCACAGTTCAACCAAGTCTTGAATGTAGAATTGGATCAGATTATTGAGCTTTTAACAAAATCTTTCCAGGCTGGTGGTTCTTCCACAATGAGTCAGTCTCCTATTTCATTCATGTTTTTGTATCTGTGCATCAAAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

110

Amino Acids

12.11

Weight (kDa)

4.16

Isoelectric Point (pI)

43.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018322)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54730
malus_domestica MD04G1100200.v1.1
rosa_chinensis RchiOBHm_Chr3g0463431 RchiOBHm_Chr6g0293031
rosa_laevigata RLG00000014314
rosa_multiflora Rmu_co8197710.1_g000001 Rmu_sc0025580.1_g000001
rosa_rugosa Rorug01G0145000.1
rosa_samantha Rh2AG056800
rosa_wichuraiana Rw5G038540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 231
AgsI TTSAA 3 cut(s) 150, 199, 211
AjnI CCWGG 1 cut(s) 255
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AluBI AGCT 4 cut(s) 49, 154, 163, 238
AluI AGCT 4 cut(s) 49, 154, 163, 238
Alw26I GTCTC 3 cut(s) 24, 123, 291
AlwI GGATC 1 cut(s) 231
BccI CCATC 1 cut(s) 170
BciT130I CCWGG 1 cut(s) 257
BclI TGATCA 1 cut(s) 55
BcoDI GTCTC 3 cut(s) 24, 123, 291
Bme1390I CCNGG 1 cut(s) 257
BmrFI CCNGG 1 cut(s) 257
BplI GAGNNNNNCTC 2 cut(s) 271, 303
BpuEI CTTGAG 1 cut(s) 185
BseBI CCWGG 1 cut(s) 257
BseGI GGATG 2 cut(s) 73, 181
BseMII CTCAG 1 cut(s) 156
BseYI CCCAGC 1 cut(s) 37
BsmAI GTCTC 3 cut(s) 24, 123, 291
Bsp143I GATC 2 cut(s) 55, 223
BspCNI CTCAG 1 cut(s) 155
BspPI GGATC 1 cut(s) 231
BssMI GATC 2 cut(s) 55, 223
Bst2UI CCWGG 1 cut(s) 257
Bst4CI ACNGT 1 cut(s) 195
BstDEI CTNAG 1 cut(s) 142
BstF5I GGATG 2 cut(s) 73, 181
BstKTI GATC 2 cut(s) 58, 226
BstMAI GTCTC 3 cut(s) 24, 123, 291
BstMBI GATC 2 cut(s) 55, 223
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstNI CCWGG 1 cut(s) 257
BstSCI CCNGG 1 cut(s) 255
BstXI CCANNNNNNTGG 1 cut(s) 263
BtsCI GGATG 2 cut(s) 73, 181
CviAII CATG 1 cut(s) 301
CviJI RGCY 6 cut(s) 49, 110, 154, 163, 238, 260
CviKI_1 RGCY 6 cut(s) 49, 110, 154, 163, 238, 260
DdeI CTNAG 1 cut(s) 142
DpnI GATC 2 cut(s) 57, 225
DpnII GATC 2 cut(s) 55, 223
EcoRII CCWGG 1 cut(s) 255
FaeI CATG 1 cut(s) 304
FaiI YATR 3 cut(s) 95, 134, 302
FatI CATG 1 cut(s) 300
FbaI TGATCA 1 cut(s) 55
FokI GGATG 2 cut(s) 80, 188
GsaI CCCAGC 1 cut(s) 41
Hin1II CATG 1 cut(s) 304
HindIII AAGCTT 2 cut(s) 152, 161
HinfI GANTC 3 cut(s) 4, 188, 280
Hpy188I TCNGA 1 cut(s) 228
Hpy188III TCNNGA 2 cut(s) 101, 208
HpyAV CCTTC 1 cut(s) 148
HpyCH4III ACNGT 1 cut(s) 195
HpyCH4V TGCA 1 cut(s) 318
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
HpyF3I CTNAG 1 cut(s) 142
Hsp92II CATG 1 cut(s) 304
Ksp22I TGATCA 1 cut(s) 55
Kzo9I GATC 2 cut(s) 55, 223
LpnPI CCDG 5 cut(s) 23, 86, 242, 246, 269
MaeIII GTNAC 1 cut(s) 189
MalI GATC 2 cut(s) 57, 225
MboI GATC 2 cut(s) 55, 223
MboII GAAGA 1 cut(s) 261
MfeI CAATTG 1 cut(s) 79
MluCI AATT 3 cut(s) 22, 79, 218
MlyI GAGTC 2 cut(s) 197, 289
MnlI CCTC 1 cut(s) 160
MseI TTAA 2 cut(s) 156, 242
MslI CAYNNNNRTG 1 cut(s) 323
MspR9I CCNGG 1 cut(s) 257
MunI CAATTG 1 cut(s) 79
MvaI CCWGG 1 cut(s) 257
MwoI GCNNNNNNNGC 1 cut(s) 160
NdeII GATC 2 cut(s) 55, 223
NlaIII CATG 1 cut(s) 304
NmuCI GTSAC 1 cut(s) 189
PleI GAGTC 2 cut(s) 196, 288
PpsI GAGTC 2 cut(s) 196, 288
Psp6I CCWGG 1 cut(s) 255
PspFI CCCAGC 1 cut(s) 37
PspGI CCWGG 1 cut(s) 255
RseI CAYNNNNRTG 1 cut(s) 323
SaqAI TTAA 2 cut(s) 156, 242
Sau3AI GATC 2 cut(s) 55, 223
SchI GAGTC 2 cut(s) 197, 289
ScrFI CCNGG 1 cut(s) 257
SetI ASST 5 cut(s) 51, 156, 165, 171, 240
SmiMI CAYNNNNRTG 1 cut(s) 323
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 3 cut(s) 22, 79, 218
StyD4I CCNGG 1 cut(s) 255
TaaI ACNGT 1 cut(s) 195
TasI AATT 3 cut(s) 22, 79, 218
Tru1I TTAA 2 cut(s) 156, 242
Tru9I TTAA 2 cut(s) 156, 242
TseFI GTSAC 1 cut(s) 189
Tsp45I GTSAC 1 cut(s) 189
TspDTI ATGAA 2 cut(s) 285, 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.