AT1G54990

Protein AUXIN RESPONSE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011194
Physical Location & Seq
Forward (+)
20511519 .. 20513681
2163 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G54990.1

Sequence Viewer

Length: 1422 bp
ATGGCGATTATCACAGAAGAAGAAGAGGATCCAAAAACCCTAAATCCACCGAAGAACAAACCTAAAGACTCTGACTTTACGAAATCTGAATCAACTATGAAGAACCCTAAACCCCAATCTCAAAACCCTTTCCCATTTTGGTTCTACTTTACAGTAGTCGTCTCACTAGCCACAATCATCTTCATATCTCTCTCTCTGTTCTCTTCTCAAAACGATCCAAGATCTTGGTTTCTCTCACTCCCACCAGCTCTTCGTCAACATTACTCAAATGGACGAACAATCAAAGTCCAAGTAAACTCAAACGAGTCACCAATTGAAGTCTTTGTAGCTGAATCAGGTTCGATTCATACAGAGACTGTTGTAATCGTTCATGGGTTAGGTCTAAGTTCGTTTGCTTTTAAGGAAATGATTCAATCTCTTGGATCAAAAGGGATCCATAGTGTTGCTATTGATTTACCTGGAAATGGGTTCTCTGATAAGTCAATGGTAGTGATTGGTGGAGATAGAGAGATAGGGTTTGTGGCTAGAGTTAAGGAAGTTTATGGTTTGATTCAAGAGAAAGGTGTGTTTTGGGCTTTTGATCAGATGATTGAAACTGGAGATTTGCCTTATGAGGAGATCATAAAGCTTCAGAATTCGAAAAGGAGAAGCTTCAAAGCTATCGAGTTAGGGAGTGAAGAAACTGCTAGAGTTTTAGGTCAAGTGATTGATACTTTGGGTTTAGCTCCTGTGCATTTGGTTCTTCATGATTCAGCTTTAGGGTTAGCTTCGAATTGGGTTTCTGAGAATTGGCAAAGTGTTCGAAGTGTAACTCTTATTGACTCTAGTATTAGTCCAGCTTTGCCGTTGTGGGTTTTGAATGTACCGGGGATTCGAGAGATTTTGTTAGCGTTTTCGTTTGGTTTTGAGAAGCTAGTGAGCTTCCGGTGCTCAAAGGAGATGACTTTATCGGATATTGATGCTCATAGGATACTTTTGAAGGGAAGAAATGGGAGAGAAGCTGTTGTTGCTTCGTTAAACAAGTTAAACCATAGCTTTGACATTGCACAATGGGGTAATTCAGATGGGATTAATGGTATTCCGATGCAAGTGATTTGGTCTAGTGAAGCGTCTAAAGAATGGAGTGACGAGGGGCAACGTGTAGCTAAGGCTCTTCCGAAAGCAAAGTTTGTCACACATTCAGGCAGCCGGTGGCCTCAGGAAAGCAAATCCGGCGAGCTTGCAGATTACATATCAGAATTTGTCTCTCTCCTCCCTAAATCCATCAGACGGGTTGCTGAAGAACCTATCCCTGAGGAAGTACAGAAAGTGTTAGAAGAAGCAAAGGCTGGTGATGACCATGACCATCATCATGGCCACGGGCATGCCCATGCTGGTTACTCGGATGCTTATGGTCTTGGTGAGGAATGGACTACTACTTGA

Protein Analysis

473

Amino Acids

52.42

Weight (kDa)

5.63

Isoelectric Point (pI)

44.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 119 - 298 9.2e-11 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 120 - 409 1.6e-08 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54990
fragaria_vesca FvH4_6g06010
malus_domestica MD04G1204900.v1.1 MD12G1218600.v1.1
prunus_persica Prupe.6G324900_v2.0.a1
pyrus_communis pycom04g18110 pycom12g20410
rosa_chinensis RchiOBHm_Chr3g0454971
rosa_laevigata RLG00000025397
rosa_multiflora Rmu_sc0002169.1_g000009
rosa_roxburghii Rroxscaffold_6G00424640
rosa_rugosa Rorug03G0003400 Rorug03G0003500 Rorug03G0003500 Rorug03G0003600
rosa_samantha Rh3AG063200 Rh3BG065200 Rh3CG064000 Rh3DG065200
rosa_wichuraiana Rw3G004960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 6 cut(s) 23, 36, 209, 427, 430, 440
AcoI YGGCCR 1 cut(s) 1354
AcsI RAATTY 2 cut(s) 634, 1238
AcuI CTGAAG 2 cut(s) 614, 1299
AfaI GTAC 2 cut(s) 864, 1302
AfiI CCNNNNNNNGG 2 cut(s) 464, 1269
AflIII ACRYGT 1 cut(s) 1138
AgsI TTSAA 7 cut(s) 317, 413, 554, 593, 655, 859, 979
AjnI CCWGG 1 cut(s) 457
Alw21I GWGCWC 1 cut(s) 932
Alw26I GTCTC 3 cut(s) 166, 347, 1249
AlwI GGATC 6 cut(s) 23, 36, 209, 427, 430, 440
AlwNI CAGNNNCTG 1 cut(s) 356
AoxI GGCC 2 cut(s) 1193, 1354
ApeKI GCWGC 1 cut(s) 1185
ApoI RAATTY 2 cut(s) 634, 1238
AseI ATTAAT 1 cut(s) 1071
Asp700I GAANNNNTTC 1 cut(s) 408
AsuC2I CCSGG 1 cut(s) 867
AsuHPI GGTGA 3 cut(s) 300, 1343, 1412
AsuII TTCGAA 3 cut(s) 638, 770, 802
AxyI CCTNAGG 2 cut(s) 1197, 1293
BalI TGGCCA 1 cut(s) 1356
BamHI GGATCC 2 cut(s) 28, 432
Bbv12I GWGCWC 1 cut(s) 932
BbvI GCAGC 1 cut(s) 1197
BccI CCATC 3 cut(s) 1058, 1271, 1353
BceAI ACGGC 1 cut(s) 829
BcgI CGANNNNNNTGC 2 cut(s) 782, 816
BciT130I CCWGG 1 cut(s) 459
BciVI GTATCC 1 cut(s) 963
BclI TGATCA 1 cut(s) 580
BcnI CCSGG 1 cut(s) 867
BcoDI GTCTC 3 cut(s) 166, 347, 1249
BfaI CTAG 6 cut(s) 167, 525, 687, 825, 914, 1101
BfuI GTATCC 1 cut(s) 963
BglII AGATCT 1 cut(s) 221
BisI GCNGC 1 cut(s) 1186
BlsI GCNGC 1 cut(s) 1187
Bme1390I CCNGG 2 cut(s) 459, 867
BmiI GGNNCC 2 cut(s) 30, 434
BmrFI CCNGG 2 cut(s) 459, 867
BmsI GCATC 3 cut(s) 949, 1074, 1375
BpmI CTGGAG 1 cut(s) 618
Bpu10I CCTNAGC 1 cut(s) 1146
Bpu14I TTCGAA 3 cut(s) 638, 770, 802
BpuMI CCSGG 1 cut(s) 867
BsaJI CCNNGG 2 cut(s) 866, 1357
BsaWI WCCGGW 1 cut(s) 924
Bsc4I CCNNNNNNNGG 2 cut(s) 464, 1269
Bse118I RCCGGY 1 cut(s) 1188
Bse1I ACTGG 1 cut(s) 601
Bse21I CCTNAGG 2 cut(s) 1197, 1293
Bse3DI GCAATG 1 cut(s) 1041
BseBI CCWGG 1 cut(s) 459
BseDI CCNNGG 2 cut(s) 866, 1357
BseGI GGATG 1 cut(s) 1390
BseLI CCNNNNNNNGG 2 cut(s) 464, 1269
BseMI GCAATG 1 cut(s) 1041
BseMII CTCAG 3 cut(s) 774, 1211, 1284
BseNI ACTGG 1 cut(s) 601
BseRI GAGGAG 2 cut(s) 629, 1241
BseXI GCAGC 1 cut(s) 1197
BshFI GGCC 2 cut(s) 1195, 1356
BsiHKAI GWGCWC 1 cut(s) 932
BsiSI CCGG 4 cut(s) 866, 925, 1189, 1212
BslI CCNNNNNNNGG 2 cut(s) 464, 1269
BsmAI GTCTC 3 cut(s) 166, 347, 1249
BsmBI CGTCTC 1 cut(s) 166
BsnI GGCC 2 cut(s) 1195, 1356
Bsp119I TTCGAA 3 cut(s) 638, 770, 802
Bsp1286I GDGCHC 1 cut(s) 932
Bsp143I GATC 7 cut(s) 28, 214, 221, 422, 432, 580, 618
BspANI GGCC 2 cut(s) 1195, 1356
BspCNI CTCAG 3 cut(s) 775, 1210, 1285
BspHI TCATGA 1 cut(s) 745
BspLI GGNNCC 2 cut(s) 30, 434
BspPI GGATC 6 cut(s) 23, 36, 209, 427, 430, 440
BspQI GCTCTTC 2 cut(s) 255, 1158
BspT104I TTCGAA 3 cut(s) 638, 770, 802
BsrDI GCAATG 1 cut(s) 1041
BsrFI RCCGGY 1 cut(s) 1188
BsrI ACTGG 1 cut(s) 601
BssAI RCCGGY 1 cut(s) 1188
BssECI CCNNGG 2 cut(s) 866, 1357
BssMI GATC 7 cut(s) 28, 214, 221, 422, 432, 580, 618
Bst2UI CCWGG 1 cut(s) 459
Bst4CI ACNGT 2 cut(s) 154, 358
Bst6I CTCTTC 4 cut(s) 18, 208, 255, 1158
BstBI TTCGAA 3 cut(s) 638, 770, 802
BstC8I GCNNGC 3 cut(s) 1217, 1221, 1365
BstDEI CTNAG 5 cut(s) 383, 783, 1146, 1197, 1293
BstDSI CCRYGG 1 cut(s) 1357
BstF5I GGATG 1 cut(s) 1390
BstKTI GATC 7 cut(s) 31, 217, 224, 425, 435, 583, 621
BstMAI GTCTC 3 cut(s) 166, 347, 1249
BstMBI GATC 7 cut(s) 28, 214, 221, 422, 432, 580, 618
BstMWI GCNNNNNNNGC 3 cut(s) 927, 1007, 1212
BstNI CCWGG 1 cut(s) 459
BstNSI RCATGY 1 cut(s) 1367
BstSCI CCNGG 2 cut(s) 457, 865
BstV1I GCAGC 1 cut(s) 1197
BstX2I RGATCY 3 cut(s) 28, 221, 432
BstXI CCANNNNNNTGG 2 cut(s) 225, 1352
BstYI RGATCY 3 cut(s) 28, 221, 432
Bsu36I CCTNAGG 2 cut(s) 1197, 1293
BsuI GTATCC 1 cut(s) 963
BsuRI GGCC 2 cut(s) 1195, 1356
BtgI CCRYGG 1 cut(s) 1357
BtsCI GGATG 1 cut(s) 1390
Cac8I GCNNGC 3 cut(s) 1217, 1221, 1365
CaiI CAGNNNCTG 1 cut(s) 356
CciI TCATGA 1 cut(s) 745
Cfr10I RCCGGY 1 cut(s) 1188
CseI GACGC 1 cut(s) 1098
Csp6I GTAC 2 cut(s) 863, 1301
CviAII CATG 6 cut(s) 371, 746, 1340, 1352, 1364, 1370
CviQI GTAC 2 cut(s) 863, 1301
DdeI CTNAG 5 cut(s) 383, 783, 1146, 1197, 1293
DpnI GATC 7 cut(s) 30, 216, 223, 424, 434, 582, 620
DpnII GATC 7 cut(s) 28, 214, 221, 422, 432, 580, 618
EaeI YGGCCR 1 cut(s) 1354
Eam1104I CTCTTC 4 cut(s) 18, 208, 255, 1158
EarI CTCTTC 4 cut(s) 18, 208, 255, 1158
Eco57I CTGAAG 2 cut(s) 614, 1299
Eco81I CCTNAGG 2 cut(s) 1197, 1293
EcoRI GAATTC 1 cut(s) 634
EcoRII CCWGG 1 cut(s) 457
Esp3I CGTCTC 1 cut(s) 166
FaeI CATG 6 cut(s) 374, 749, 1343, 1355, 1367, 1373
FatI CATG 6 cut(s) 370, 745, 1339, 1351, 1363, 1369
FbaI TGATCA 1 cut(s) 580
Fnu4HI GCNGC 1 cut(s) 1186
FokI GGATG 1 cut(s) 1397
Fsp4HI GCNGC 1 cut(s) 1186
FspBI CTAG 6 cut(s) 167, 525, 687, 825, 914, 1101
GluI GCNGC 1 cut(s) 1186
GsuI CTGGAG 1 cut(s) 618
HaeIII GGCC 2 cut(s) 1195, 1356
HapII CCGG 4 cut(s) 866, 925, 1189, 1212
HgaI GACGC 1 cut(s) 1098
Hin1II CATG 6 cut(s) 374, 749, 1343, 1355, 1367, 1373
HincII GTYRAC 1 cut(s) 257
HindII GTYRAC 1 cut(s) 257
HindIII AAGCTT 2 cut(s) 626, 649
HpaII CCGG 4 cut(s) 866, 925, 1189, 1212
HphI GGTGA 3 cut(s) 300, 1343, 1412
Hpy166II GTNNAC 2 cut(s) 257, 295
Hpy188III TCNNGA 4 cut(s) 554, 746, 875, 1199
Hpy8I GTNNAC 2 cut(s) 257, 295
HpyAV CCTTC 1 cut(s) 973
HpyCH4III ACNGT 2 cut(s) 154, 358
HpyCH4IV ACGT 1 cut(s) 1138
HpyCH4V TGCA 4 cut(s) 733, 1046, 1087, 1223
HpyF10VI GCNNNNNNNGC 3 cut(s) 927, 1007, 1212
HpyF3I CTNAG 5 cut(s) 383, 783, 1146, 1197, 1293
HpySE526I ACGT 1 cut(s) 1138
Hsp92II CATG 6 cut(s) 374, 749, 1343, 1355, 1367, 1373
Ksp22I TGATCA 1 cut(s) 580
Kzo9I GATC 7 cut(s) 28, 214, 221, 422, 432, 580, 618
LguI GCTCTTC 2 cut(s) 255, 1158
LmnI GCTCC 1 cut(s) 730
Lsp1109I GCAGC 1 cut(s) 1197
LweI GCATC 3 cut(s) 949, 1074, 1375
MaeI CTAG 6 cut(s) 167, 525, 687, 825, 914, 1101
MaeII ACGT 1 cut(s) 1138
MaeIII GTNAC 5 cut(s) 306, 808, 1124, 1171, 1376
MalI GATC 7 cut(s) 30, 216, 223, 424, 434, 582, 620
MboI GATC 7 cut(s) 28, 214, 221, 422, 432, 580, 618
MfeI CAATTG 1 cut(s) 312
MflI RGATCY 3 cut(s) 28, 221, 432
MhlI GDGCHC 1 cut(s) 932
MlsI TGGCCA 1 cut(s) 1356
MluCI AATT 6 cut(s) 312, 634, 772, 787, 1057, 1238
MluNI TGGCCA 1 cut(s) 1356
MlyI GAGTC 3 cut(s) 62, 314, 815
MnlI CCTC 7 cut(s) 19, 607, 1123, 1206, 1262, 1288, 1396
Mox20I TGGCCA 1 cut(s) 1356
MroXI GAANNNNTTC 1 cut(s) 408
MscI TGGCCA 1 cut(s) 1356
MseI TTAA 5 cut(s) 399, 531, 1016, 1025, 1071
MslI CAYNNNNRTG 3 cut(s) 1350, 1362, 1368
Msp20I TGGCCA 1 cut(s) 1356
MspI CCGG 4 cut(s) 866, 925, 1189, 1212
MspR9I CCNGG 2 cut(s) 459, 867
MunI CAATTG 1 cut(s) 312
MvaI CCWGG 1 cut(s) 459
MwoI GCNNNNNNNGC 3 cut(s) 927, 1007, 1212
NciI CCSGG 1 cut(s) 867
NdeII GATC 7 cut(s) 28, 214, 221, 422, 432, 580, 618
NlaIII CATG 6 cut(s) 374, 749, 1343, 1355, 1367, 1373
NlaIV GGNNCC 2 cut(s) 30, 434
NmuCI GTSAC 3 cut(s) 306, 1124, 1171
NspI RCATGY 1 cut(s) 1367
NspV TTCGAA 3 cut(s) 638, 770, 802
PaeI GCATGC 1 cut(s) 1367
PagI TCATGA 1 cut(s) 745
PciSI GCTCTTC 2 cut(s) 255, 1158
PdmI GAANNNNTTC 1 cut(s) 408
PfeI GAWTC 7 cut(s) 89, 332, 343, 409, 550, 749, 871
PkrI GCNGC 1 cut(s) 1187
PleI GAGTC 3 cut(s) 62, 313, 815
PpsI GAGTC 3 cut(s) 62, 313, 815
PshBI ATTAAT 1 cut(s) 1071
Psp6I CCWGG 1 cut(s) 457
PspGI CCWGG 1 cut(s) 457
PspN4I GGNNCC 2 cut(s) 30, 434
PstNI CAGNNNCTG 1 cut(s) 356
PsuI RGATCY 3 cut(s) 28, 221, 432
RsaI GTAC 2 cut(s) 864, 1302
RsaNI GTAC 2 cut(s) 863, 1301
RseI CAYNNNNRTG 3 cut(s) 1350, 1362, 1368
SapI GCTCTTC 2 cut(s) 255, 1158
SaqAI TTAA 5 cut(s) 399, 531, 1016, 1025, 1071
SatI GCNGC 1 cut(s) 1186
Sau3AI GATC 7 cut(s) 28, 214, 221, 422, 432, 580, 618
SchI GAGTC 3 cut(s) 62, 314, 815
ScrFI CCNGG 2 cut(s) 459, 867
SduI GDGCHC 1 cut(s) 932
SfaNI GCATC 3 cut(s) 949, 1074, 1375
SfuI TTCGAA 3 cut(s) 638, 770, 802
SmiMI CAYNNNNRTG 3 cut(s) 1350, 1362, 1368
SphI GCATGC 1 cut(s) 1367
Sse9I AATT 6 cut(s) 312, 634, 772, 787, 1057, 1238
SspMI CTAG 6 cut(s) 167, 525, 687, 825, 914, 1101
StyD4I CCNGG 2 cut(s) 457, 865
TaaI ACNGT 2 cut(s) 154, 358
TaiI ACGT 1 cut(s) 1141
TaqI TCGA 6 cut(s) 341, 638, 663, 770, 802, 874
TasI AATT 6 cut(s) 312, 634, 772, 787, 1057, 1238
TatI WGTACW 1 cut(s) 1300
TfiI GAWTC 7 cut(s) 89, 332, 343, 409, 550, 749, 871
Tru1I TTAA 5 cut(s) 399, 531, 1016, 1025, 1071
Tru9I TTAA 5 cut(s) 399, 531, 1016, 1025, 1071
TseFI GTSAC 3 cut(s) 306, 1124, 1171
TseI GCWGC 1 cut(s) 1185
Tsp45I GTSAC 3 cut(s) 306, 1124, 1171
TspDTI ATGAA 5 cut(s) 113, 172, 335, 359, 734
VspI ATTAAT 1 cut(s) 1071
XapI RAATTY 2 cut(s) 634, 1238
XceI RCATGY 1 cut(s) 1367
XmnI GAANNNNTTC 1 cut(s) 408
XspI CTAG 6 cut(s) 167, 525, 687, 825, 914, 1101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.