Rorug03G0003600

Protein AUXIN RESPONSE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0011194
Physical Location & Seq
Reverse (-)
313841 .. 314461
621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0003600.1

Sequence Viewer

Length: 621 bp
ATGGCCTCCATCCATCTCCTCCACGGCCTGTCGCCGACTACTCCCAAAACCCTAAAAATGATGCCCAAATTCCACTCCTCCTTCCCGTCCACCATCGCCAACAGGTCGCTCTCTTTCCCCAAATCCAAATCGAGGACCATCACTTGCTCCGGCGCGACGACACCCGCCACAGATCGGTTAATCTCAGCCGTCTCTTACACTCTCCCCTTCTTCAATTCCCTCCAGTACGGTCGCTACCTGTTCTTCCAGTTCCCCAAACTGGGCCTCCTCTTCGAGCCGCTGCTTCCCTTGTTGGGCCTCTACCGGTCCATCCCCTACTCGAGCTTCGTCGCCTTCTTCGCCCTCTATTTGGGTGTGGTCAGAAACCCTAGCTTCAGCCACTATGTCAGGTTCAATGCTATGCAGGCCGTCACCTTGGACGTCCTCTTGGTCCTCCCGCTCCTCATTCAGAGGATCTTCAGTCCGGGTCAGGCCGGTCTGGGCTACAAGCTCATGGTCTGGGGTCACAATGGTATTTTCGTTTTCAGTGTTCTCTGCTTTGTTTATGGGTTGGTTAGTTCAATTTTGGGTAGGACTCCTTATTTGCCCTTTGTTGCTGATGCCGCCGGCCGCCAGCTCTGA

Protein Analysis

206

Amino Acids

22.89

Weight (kDa)

10.15

Isoelectric Point (pI)

36.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIC20 PF16166 59 - 202 4e-46 Chloroplast import apparatus Tic20-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54990
fragaria_vesca FvH4_6g06010
malus_domestica MD04G1204900.v1.1 MD12G1218600.v1.1
prunus_persica Prupe.6G324900_v2.0.a1
pyrus_communis pycom04g18110 pycom12g20410
rosa_chinensis RchiOBHm_Chr3g0454971
rosa_laevigata RLG00000025397
rosa_multiflora Rmu_sc0002169.1_g000009
rosa_roxburghii Rroxscaffold_6G00424640
rosa_rugosa Rorug03G0003400 Rorug03G0003500 Rorug03G0003500 Rorug03G0003600
rosa_samantha Rh3AG063200 Rh3BG065200 Rh3CG064000 Rh3DG065200
rosa_wichuraiana Rw3G004960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 423
AccBSI CCGCTC 1 cut(s) 439
AccII CGCG 1 cut(s) 155
AciI CCGC 5 cut(s) 165, 278, 437, 603, 610
AclWI GGATC 1 cut(s) 461
AcoI YGGCCR 1 cut(s) 607
AcsI RAATTY 1 cut(s) 68
AcuI CTGAAG 2 cut(s) 358, 442
AcyI GRCGYC 1 cut(s) 420
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 6 cut(s) 132, 174, 259, 260, 293, 349
AgeI ACCGGT 1 cut(s) 303
AgsI TTSAA 3 cut(s) 214, 394, 561
AluBI AGCT 4 cut(s) 324, 372, 490, 616
AluI AGCT 4 cut(s) 324, 372, 490, 616
Alw26I GTCTC 1 cut(s) 196
AlwI GGATC 1 cut(s) 461
Ama87I CYCGRG 1 cut(s) 319
AoxI GGCC 7 cut(s) 3, 25, 262, 295, 405, 471, 607
ApeKI GCWGC 1 cut(s) 280
ApoI RAATTY 1 cut(s) 68
ArsI GACNNNNNNTTYG 2 cut(s) 565, 597
AsiGI ACCGGT 1 cut(s) 303
AspLEI GCGC 1 cut(s) 155
AspS9I GGNCC 5 cut(s) 135, 262, 295, 306, 430
AsuC2I CCSGG 1 cut(s) 465
AsuHPI GGTGA 1 cut(s) 403
AvaI CYCGRG 1 cut(s) 319
AvaII GGWCC 3 cut(s) 135, 306, 430
BbvI GCAGC 1 cut(s) 267
BccI CCATC 5 cut(s) 17, 21, 101, 146, 317
BceAI ACGGC 3 cut(s) 40, 173, 392
BcnI CCSGG 1 cut(s) 465
BcoDI GTCTC 1 cut(s) 196
BfaI CTAG 1 cut(s) 369
BisI GCNGC 4 cut(s) 278, 281, 603, 610
BlsI GCNGC 4 cut(s) 279, 282, 604, 611
Bme1390I CCNGG 1 cut(s) 465
Bme18I GGWCC 3 cut(s) 135, 306, 430
BmeT110I CYCGRG 1 cut(s) 319
BmgT120I GGNCC 5 cut(s) 135, 262, 295, 306, 430
BmrFI CCNGG 1 cut(s) 465
BmrI ACTGGG 1 cut(s) 269
BmsI GCATC 2 cut(s) 51, 589
BmuI ACTGGG 1 cut(s) 269
BpmI CTGGAG 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 465
BsaHI GRCGYC 1 cut(s) 420
BsaJI CCNNGG 2 cut(s) 22, 414
BsaWI WCCGGW 1 cut(s) 303
BsaXI ACNNNNNCTCC 2 cut(s) 249, 279
Bsc4I CCNNNNNNNGG 6 cut(s) 132, 174, 259, 260, 293, 349
Bse118I RCCGGY 3 cut(s) 303, 473, 605
Bse1I ACTGG 3 cut(s) 223, 247, 264
BseDI CCNNGG 2 cut(s) 22, 414
BseGI GGATG 2 cut(s) 9, 309
BseLI CCNNNNNNNGG 6 cut(s) 132, 174, 259, 260, 293, 349
BseMII CTCAG 1 cut(s) 198
BseNI ACTGG 3 cut(s) 223, 247, 264
BseRI GAGGAG 4 cut(s) 8, 67, 257, 431
BseX3I CGGCCG 1 cut(s) 607
BseXI GCAGC 1 cut(s) 267
Bsh1236I CGCG 1 cut(s) 155
Bsh1285I CGRYCG 2 cut(s) 232, 610
BshFI GGCC 7 cut(s) 5, 27, 264, 297, 407, 473, 609
BshTI ACCGGT 1 cut(s) 303
BsiEI CGRYCG 2 cut(s) 232, 610
BsiHKCI CYCGRG 1 cut(s) 319
BsiSI CCGG 5 cut(s) 150, 304, 464, 474, 606
BslI CCNNNNNNNGG 6 cut(s) 132, 174, 259, 260, 293, 349
BsmAI GTCTC 1 cut(s) 196
BsmBI CGTCTC 1 cut(s) 196
BsnI GGCC 7 cut(s) 5, 27, 264, 297, 407, 473, 609
BsoBI CYCGRG 1 cut(s) 319
Bsp143I GATC 2 cut(s) 172, 453
BspACI CCGC 5 cut(s) 165, 278, 437, 603, 610
BspANI GGCC 7 cut(s) 5, 27, 264, 297, 407, 473, 609
BspCNI CTCAG 1 cut(s) 197
BspFNI CGCG 1 cut(s) 155
BspPI GGATC 1 cut(s) 461
BsrBI CCGCTC 1 cut(s) 439
BsrFI RCCGGY 3 cut(s) 303, 473, 605
BsrI ACTGG 3 cut(s) 223, 247, 264
BssAI RCCGGY 3 cut(s) 303, 473, 605
BssECI CCNNGG 2 cut(s) 22, 414
BssMI GATC 2 cut(s) 172, 453
BssNI GRCGYC 1 cut(s) 420
BssT1I CCWWGG 1 cut(s) 414
Bst4CI ACNGT 1 cut(s) 230
Bst6I CTCTTC 1 cut(s) 275
BstACI GRCGYC 1 cut(s) 420
BstC8I GCNNGC 3 cut(s) 405, 607, 614
BstDEI CTNAG 1 cut(s) 184
BstDSI CCRYGG 1 cut(s) 22
BstF5I GGATG 2 cut(s) 9, 309
BstFNI CGCG 1 cut(s) 155
BstHHI GCGC 1 cut(s) 155
BstKTI GATC 2 cut(s) 175, 456
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 2 cut(s) 172, 453
BstMCI CGRYCG 2 cut(s) 232, 610
BstMWI GCNNNNNNNGC 3 cut(s) 338, 404, 602
BstSCI CCNGG 1 cut(s) 463
BstUI CGCG 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 267
BstX2I RGATCY 1 cut(s) 453
BstYI RGATCY 1 cut(s) 453
BstZI CGGCCG 1 cut(s) 607
BsuRI GGCC 7 cut(s) 5, 27, 264, 297, 407, 473, 609
BtgI CCRYGG 1 cut(s) 22
BtgZI GCGATG 1 cut(s) 79
BtsCI GGATG 2 cut(s) 9, 309
BtsIMutI CAGTG 1 cut(s) 532
Cac8I GCNNGC 3 cut(s) 405, 607, 614
CfoI GCGC 1 cut(s) 155
Cfr10I RCCGGY 3 cut(s) 303, 473, 605
Cfr13I GGNCC 5 cut(s) 135, 262, 295, 306, 430
Csp6I GTAC 1 cut(s) 226
CspAI ACCGGT 1 cut(s) 303
CviAII CATG 1 cut(s) 493
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 1 cut(s) 184
DpnI GATC 2 cut(s) 174, 455
DpnII GATC 2 cut(s) 172, 453
EaeI YGGCCR 1 cut(s) 607
EagI CGGCCG 1 cut(s) 607
Eam1104I CTCTTC 1 cut(s) 275
EarI CTCTTC 1 cut(s) 275
EclXI CGGCCG 1 cut(s) 607
Eco130I CCWWGG 1 cut(s) 414
Eco47I GGWCC 3 cut(s) 135, 306, 430
Eco52I CGGCCG 1 cut(s) 607
Eco57I CTGAAG 2 cut(s) 358, 442
Eco88I CYCGRG 1 cut(s) 319
EcoT14I CCWWGG 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 414
Esp3I CGTCTC 1 cut(s) 196
FaeI CATG 1 cut(s) 496
FaiI YATR 4 cut(s) 384, 401, 494, 546
FatI CATG 1 cut(s) 492
FauI CCCGC 2 cut(s) 172, 444
Fnu4HI GCNGC 4 cut(s) 278, 281, 603, 610
FokI GGATG 1 cut(s) 296
Fsp4HI GCNGC 4 cut(s) 278, 281, 603, 610
FspBI CTAG 1 cut(s) 369
GlaI GCGC 1 cut(s) 154
GluI GCNGC 4 cut(s) 278, 281, 603, 610
GsuI CTGGAG 1 cut(s) 206
HaeIII GGCC 7 cut(s) 5, 27, 264, 297, 407, 473, 609
HapII CCGG 5 cut(s) 150, 304, 464, 474, 606
HhaI GCGC 1 cut(s) 155
Hin1I GRCGYC 1 cut(s) 420
Hin1II CATG 1 cut(s) 496
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
HinfI GANTC 1 cut(s) 574
HpaII CCGG 5 cut(s) 150, 304, 464, 474, 606
HphI GGTGA 1 cut(s) 403
Hpy166II GTNNAC 1 cut(s) 90
Hpy188I TCNGA 3 cut(s) 362, 450, 620
Hpy8I GTNNAC 1 cut(s) 90
Hpy99I CGWCG 2 cut(s) 160, 332
HpyAV CCTTC 3 cut(s) 91, 217, 343
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4IV ACGT 1 cut(s) 420
HpyCH4V TGCA 1 cut(s) 403
HpyF10VI GCNNNNNNNGC 3 cut(s) 338, 404, 602
HpyF3I CTNAG 1 cut(s) 184
HpySE526I ACGT 1 cut(s) 420
Hsp92I GRCGYC 1 cut(s) 420
Hsp92II CATG 1 cut(s) 496
HspAI GCGC 1 cut(s) 153
KroI GCCGGC 1 cut(s) 605
KroNI GCCGGC 1 cut(s) 607
Kzo9I GATC 2 cut(s) 172, 453
LmnI GCTCC 2 cut(s) 152, 444
Lsp1109I GCAGC 1 cut(s) 267
LweI GCATC 2 cut(s) 51, 589
MaeI CTAG 1 cut(s) 369
MaeII ACGT 1 cut(s) 420
MaeIII GTNAC 2 cut(s) 409, 503
MalI GATC 2 cut(s) 174, 455
MbiI CCGCTC 1 cut(s) 439
MboI GATC 2 cut(s) 172, 453
MboII GAAGA 5 cut(s) 202, 235, 262, 328, 448
MflI RGATCY 1 cut(s) 453
MluCI AATT 3 cut(s) 68, 214, 561
MlyI GAGTC 1 cut(s) 568
MroNI GCCGGC 1 cut(s) 605
MseI TTAA 1 cut(s) 179
MspA1I CMGCKG 1 cut(s) 280
MspI CCGG 5 cut(s) 150, 304, 464, 474, 606
MspR9I CCNGG 1 cut(s) 465
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 3 cut(s) 338, 404, 602
NaeI GCCGGC 1 cut(s) 607
NciI CCSGG 1 cut(s) 465
NdeII GATC 2 cut(s) 172, 453
NgoMIV GCCGGC 1 cut(s) 605
NlaIII CATG 1 cut(s) 496
NmuCI GTSAC 2 cut(s) 409, 503
PaeR7I CTCGAG 1 cut(s) 319
PdiI GCCGGC 1 cut(s) 607
PinAI ACCGGT 1 cut(s) 303
PkrI GCNGC 4 cut(s) 279, 282, 604, 611
PleI GAGTC 1 cut(s) 568
PpsI GAGTC 1 cut(s) 568
PspPI GGNCC 5 cut(s) 135, 262, 295, 306, 430
PspXI VCTCGAGB 1 cut(s) 319
PsuI RGATCY 1 cut(s) 453
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SaqAI TTAA 1 cut(s) 179
SatI GCNGC 4 cut(s) 278, 281, 603, 610
Sau3AI GATC 2 cut(s) 172, 453
Sau96I GGNCC 5 cut(s) 135, 262, 295, 306, 430
SchI GAGTC 1 cut(s) 568
ScrFI CCNGG 1 cut(s) 465
SetI ASST 9 cut(s) 107, 240, 326, 374, 392, 416, 423, 492, 618
SfaNI GCATC 2 cut(s) 51, 589
Sfr274I CTCGAG 1 cut(s) 319
SinI GGWCC 3 cut(s) 135, 306, 430
SlaI CTCGAG 1 cut(s) 319
SmlI CTYRAG 1 cut(s) 319
SmoI CTYRAG 1 cut(s) 319
Sse9I AATT 3 cut(s) 68, 214, 561
SsiI CCGC 5 cut(s) 165, 278, 437, 603, 610
SspMI CTAG 1 cut(s) 369
StyD4I CCNGG 1 cut(s) 463
StyI CCWWGG 1 cut(s) 414
TaaI ACNGT 1 cut(s) 230
TaiI ACGT 1 cut(s) 423
TaqI TCGA 3 cut(s) 131, 273, 320
TasI AATT 3 cut(s) 68, 214, 561
TauI GCSGC 3 cut(s) 280, 605, 612
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TscAI CASTG 1 cut(s) 532
TseFI GTSAC 2 cut(s) 409, 503
TseI GCWGC 1 cut(s) 280
Tsp45I GTSAC 2 cut(s) 409, 503
TspRI CASTG 1 cut(s) 532
VpaK11BI GGWCC 3 cut(s) 135, 306, 430
XapI RAATTY 1 cut(s) 68
XhoI CTCGAG 1 cut(s) 319
XspI CTAG 1 cut(s) 369
ZraI GACGTC 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.